Wall clock time and date at job start Mon Mar 30 2020 03:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47959 * 111.00132 * 2 1 4 4 C 1.53930 * 86.18215 * 222.41892 * 3 2 1 5 5 N 1.46900 * 113.73453 * 138.07740 * 4 3 2 6 6 C 1.47942 * 111.00460 * 195.21397 * 5 4 3 7 7 C 1.53914 * 113.33206 * 192.19066 * 6 5 4 8 8 C 1.50588 * 112.87734 * 317.74820 * 7 6 5 9 9 C 1.54524 * 108.83948 * 91.84136 * 8 7 6 10 10 H 1.08999 * 109.04109 * 43.19737 * 9 8 7 11 11 C 1.53005 * 109.03887 * 162.14093 * 9 8 7 12 12 C 1.50697 * 109.47417 * 296.04769 * 11 9 8 13 13 H 1.08003 * 119.99824 * 359.72525 * 12 11 9 14 14 C 1.37872 * 120.00242 * 180.02562 * 12 11 9 15 15 N 1.31515 * 119.99927 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00318 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46655 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46682 * 119.99964 * 16 14 12 19 19 H 1.48494 * 109.47099 * 240.00029 * 16 14 12 20 20 C 1.45874 * 111.60909 * 282.66646 * 9 8 7 21 21 C 1.44308 * 110.99934 * 67.80500 * 5 4 3 22 22 C 1.48193 * 111.06785 * 260.56753 * 2 1 3 23 23 H 1.08997 * 109.47465 * 59.99755 * 1 2 3 24 24 H 1.09001 * 109.47378 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47207 * 299.99499 * 1 2 3 26 26 H 1.09003 * 113.75399 * 108.09994 * 3 2 1 27 27 H 1.08997 * 113.86012 * 336.75073 * 3 2 1 28 28 H 1.09003 * 113.73600 * 269.25868 * 4 3 2 29 29 H 1.08996 * 108.70716 * 313.18962 * 6 5 4 30 30 H 1.09006 * 108.70681 * 71.19590 * 6 5 4 31 31 H 1.09002 * 108.79073 * 78.64955 * 7 6 5 32 32 H 1.09004 * 108.79040 * 196.85855 * 7 6 5 33 33 H 1.09004 * 109.64140 * 332.00201 * 8 7 6 34 34 H 1.09005 * 109.53120 * 211.62001 * 8 7 6 35 35 H 1.08996 * 109.46718 * 176.04303 * 11 9 8 36 36 H 1.09006 * 109.46953 * 56.04866 * 11 9 8 37 37 H 0.97007 * 120.00248 * 180.02562 * 15 14 12 38 38 H 1.08999 * 108.84291 * 182.35316 * 20 9 8 39 39 H 1.08997 * 108.84455 * 300.71296 * 20 9 8 40 40 H 1.08999 * 109.69521 * 101.64395 * 21 5 4 41 41 H 1.09005 * 109.69529 * 341.06083 * 21 5 4 42 42 H 1.09004 * 113.75996 * 23.24203 * 22 2 1 43 43 H 1.09002 * 113.82312 * 251.80966 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0211 0.8793 -1.0360 5 7 3.2515 1.8180 -2.1422 6 6 3.9416 1.1515 -3.2683 7 6 4.4746 2.1356 -4.3250 8 6 3.5003 3.2394 -4.6412 9 6 3.7933 4.4433 -3.7178 10 1 4.8711 4.5967 -3.6648 11 6 3.1397 5.6949 -4.3070 12 6 3.7732 6.0139 -5.6367 13 1 4.5661 5.3892 -6.0208 14 6 3.3449 7.1068 -6.3599 15 7 2.3838 7.8712 -5.8891 16 14 4.1306 7.5027 -8.0077 17 1 5.1807 6.4969 -8.3097 18 1 3.0942 7.4700 -9.0708 19 1 4.7411 8.8552 -7.9529 20 6 3.2766 4.2257 -2.3711 21 6 3.9194 3.0101 -1.6782 22 6 2.0017 -0.2266 -1.3642 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8901 26 1 2.4460 1.6801 0.9483 27 1 1.3023 2.1212 -0.3935 28 1 3.9458 0.5068 -0.5953 29 1 4.7782 0.5751 -2.8737 30 1 3.2439 0.4659 -3.7493 31 1 5.4003 2.5781 -3.9573 32 1 4.6909 1.5847 -5.2403 33 1 2.4820 2.8889 -4.4721 34 1 3.6164 3.5409 -5.6822 35 1 3.2821 6.5340 -3.6260 36 1 2.0733 5.5168 -4.4460 37 1 2.0822 8.6400 -6.3981 38 1 3.4699 5.1154 -1.7718 39 1 2.1994 4.0694 -2.4283 40 1 4.9783 2.9601 -1.9316 41 1 3.8035 3.0992 -0.5980 42 1 1.3042 0.0406 -2.1581 43 1 2.4505 -1.2101 -1.5038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261008694.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:40 Heat of formation + Delta-G solvation = 25.511149 kcal Electronic energy + Delta-G solvation = -19489.876373 eV Core-core repulsion = 16763.368316 eV Total energy + Delta-G solvation = -2726.508058 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.28424 -38.18471 -34.72413 -32.44784 -31.94040 -29.91483 -27.92676 -26.39206 -25.14998 -24.56789 -22.97767 -21.58943 -19.98461 -19.36382 -19.02016 -16.56748 -16.17564 -15.92531 -15.42579 -14.56594 -14.47918 -14.34576 -13.90989 -13.48376 -13.03409 -12.76091 -12.60469 -12.52558 -12.31458 -11.90974 -11.58862 -11.49997 -11.17157 -11.03570 -10.86197 -10.74989 -10.50822 -10.48552 -10.32234 -10.01790 -9.79511 -9.42146 -9.03949 -8.91518 -8.87455 -8.28612 -8.01653 -5.93726 -3.94365 3.33538 3.41244 3.44900 3.72937 4.07067 4.35316 4.50670 4.95118 4.96693 5.11354 5.21193 5.26253 5.33728 5.42185 5.47478 5.50131 5.54279 5.59926 5.62581 5.63553 5.71707 5.83387 5.96081 5.99407 6.12941 6.15540 6.24889 6.34565 6.46374 6.75664 6.82367 6.86593 6.92459 7.20785 7.25737 7.31175 7.33744 7.49109 7.76747 7.93409 8.08154 8.52371 9.12732 9.68739 11.17753 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.037064 B = 0.004519 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.265723 B = 6194.289814 C = 6468.981601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.490 5.490 3 C 0.013 3.987 4 C 0.054 3.946 5 N -0.534 5.534 6 C 0.069 3.931 7 C -0.119 4.119 8 C -0.098 4.098 9 C -0.080 4.080 10 H 0.047 0.953 11 C 0.026 3.974 12 C -0.510 4.510 13 H 0.056 0.944 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.887 3.113 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.101 4.101 21 C 0.064 3.936 22 C 0.012 3.988 23 H 0.039 0.961 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.024 0.976 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.012 0.988 36 H 0.015 0.985 37 H 0.258 0.742 38 H 0.052 0.948 39 H 0.063 0.937 40 H 0.040 0.960 41 H 0.059 0.941 42 H 0.081 0.919 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.061 -15.075 9.894 18.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 N -0.212 5.212 3 C -0.116 4.116 4 C -0.055 4.055 5 N -0.260 5.260 6 C -0.058 4.058 7 C -0.156 4.156 8 C -0.136 4.136 9 C -0.099 4.099 10 H 0.065 0.935 11 C -0.011 4.011 12 C -0.549 4.549 13 H 0.074 0.926 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.715 3.285 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.212 1.212 20 C -0.139 4.139 21 C -0.064 4.064 22 C -0.117 4.117 23 H 0.057 0.943 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.030 0.970 36 H 0.033 0.967 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.058 0.942 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.313 -15.230 10.220 18.344 hybrid contribution 0.797 0.630 -1.280 1.634 sum 0.484 -14.600 8.940 17.127 Atomic orbital electron populations 1.22828 0.89440 1.02137 1.01335 1.68448 1.09319 1.18879 1.24572 1.24014 0.97157 0.91541 0.98920 1.23520 0.96848 0.93252 0.91836 1.61020 1.51823 1.05820 1.07353 1.22322 0.95889 0.96027 0.91610 1.21467 0.99706 0.97410 0.97054 1.21283 0.98072 0.93449 1.00780 1.20164 0.99374 0.97112 0.93234 0.93461 1.19183 0.95804 0.90881 0.95194 1.21320 1.18956 1.10462 1.04139 0.92609 1.25021 0.95237 0.96439 0.97862 1.69980 1.28619 1.16812 1.38294 0.86621 0.79289 0.78169 0.84429 1.19804 1.21138 1.21165 1.20554 1.01040 0.95170 0.97126 1.21830 0.96286 0.90301 0.97979 1.24089 0.97296 0.99014 0.91302 0.94277 0.91401 0.91474 0.89760 0.89957 0.91453 0.95818 0.91615 0.92712 0.92307 0.92340 0.90892 0.96976 0.96668 0.93232 0.92919 0.91877 0.94167 0.92297 0.90106 0.89858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.08 9.65 60.06 0.58 0.50 16 2 N -0.49 -5.46 6.55 -246.53 -1.62 -7.07 16 3 C 0.01 0.14 6.81 -2.76 -0.02 0.12 16 4 C 0.05 0.63 3.17 -69.41 -0.22 0.41 16 5 N -0.53 -7.19 3.96 -228.06 -0.90 -8.09 16 6 C 0.07 0.90 5.15 -2.77 -0.01 0.89 16 7 C -0.12 -1.79 5.28 -27.46 -0.14 -1.94 16 8 C -0.10 -1.84 4.89 -27.14 -0.13 -1.97 16 9 C -0.08 -1.63 1.71 -93.19 -0.16 -1.79 16 10 H 0.05 0.99 7.58 -51.93 -0.39 0.59 16 11 C 0.03 0.68 4.38 -27.88 -0.12 0.56 16 12 C -0.51 -14.28 8.12 -34.44 -0.28 -14.56 16 13 H 0.06 1.52 7.16 -52.48 -0.38 1.15 16 14 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 16 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 C -0.10 -1.75 4.56 -29.59 -0.13 -1.89 16 21 C 0.06 0.92 5.23 -4.70 -0.02 0.89 16 22 C 0.01 0.13 7.19 -2.63 -0.02 0.11 16 23 H 0.04 0.39 7.63 -51.93 -0.40 -0.01 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.08 0.99 7.93 -51.93 -0.41 0.58 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.02 0.29 8.02 -51.93 -0.42 -0.13 16 30 H 0.07 0.82 7.91 -51.93 -0.41 0.41 16 31 H 0.05 0.85 6.66 -51.93 -0.35 0.50 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.06 1.11 7.78 -51.93 -0.40 0.70 16 34 H 0.07 1.53 6.58 -51.93 -0.34 1.19 16 35 H 0.01 0.33 8.07 -51.93 -0.42 -0.09 16 36 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 38 H 0.05 0.92 8.07 -51.93 -0.42 0.50 16 39 H 0.06 1.15 8.08 -51.93 -0.42 0.74 16 40 H 0.04 0.59 6.79 -51.93 -0.35 0.24 16 41 H 0.06 0.76 6.98 -51.93 -0.36 0.39 16 42 H 0.08 0.92 7.63 -51.93 -0.40 0.53 16 43 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 324.42 15.07 4.89 4.89 Total: -1.00 -29.44 324.42 -10.66 -40.10 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -7.96 Total: -2.96 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: -0.79 Total: -17.18 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: -1.78 Total: -41.58 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.44 -10.66 -40.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261008694.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.616 kcal (2) G-P(sol) polarization free energy of solvation -29.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds