Wall clock time and date at job start Mon Mar 30 2020 03:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47959 * 111.00132 * 2 1 4 4 C 1.53930 * 86.18215 * 222.41892 * 3 2 1 5 5 N 1.46900 * 113.73453 * 138.07740 * 4 3 2 6 6 C 1.47942 * 111.00460 * 195.21397 * 5 4 3 7 7 C 1.53914 * 113.33206 * 192.19066 * 6 5 4 8 8 C 1.50588 * 112.87734 * 317.74820 * 7 6 5 9 9 C 1.54524 * 108.83948 * 91.84136 * 8 7 6 10 10 H 1.08999 * 109.04109 * 43.19737 * 9 8 7 11 11 C 1.53005 * 109.03887 * 162.14093 * 9 8 7 12 12 C 1.50697 * 109.47417 * 296.04769 * 11 9 8 13 13 H 1.08003 * 119.99824 * 359.72525 * 12 11 9 14 14 C 1.37872 * 120.00242 * 180.02562 * 12 11 9 15 15 N 1.31515 * 119.99927 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00318 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46655 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46682 * 119.99964 * 16 14 12 19 19 H 1.48494 * 109.47099 * 240.00029 * 16 14 12 20 20 C 1.45874 * 111.60909 * 282.66646 * 9 8 7 21 21 C 1.44308 * 110.99934 * 67.80500 * 5 4 3 22 22 C 1.48193 * 111.06785 * 260.56753 * 2 1 3 23 23 H 1.08997 * 109.47465 * 59.99755 * 1 2 3 24 24 H 1.09001 * 109.47378 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47207 * 299.99499 * 1 2 3 26 26 H 1.09003 * 113.75399 * 108.09994 * 3 2 1 27 27 H 1.08997 * 113.86012 * 336.75073 * 3 2 1 28 28 H 1.09003 * 113.73600 * 269.25868 * 4 3 2 29 29 H 1.08996 * 108.70716 * 313.18962 * 6 5 4 30 30 H 1.09006 * 108.70681 * 71.19590 * 6 5 4 31 31 H 1.09002 * 108.79073 * 78.64955 * 7 6 5 32 32 H 1.09004 * 108.79040 * 196.85855 * 7 6 5 33 33 H 1.09004 * 109.64140 * 332.00201 * 8 7 6 34 34 H 1.09005 * 109.53120 * 211.62001 * 8 7 6 35 35 H 1.08996 * 109.46718 * 176.04303 * 11 9 8 36 36 H 1.09006 * 109.46953 * 56.04866 * 11 9 8 37 37 H 0.97007 * 120.00248 * 180.02562 * 15 14 12 38 38 H 1.08999 * 108.84291 * 182.35316 * 20 9 8 39 39 H 1.08997 * 108.84455 * 300.71296 * 20 9 8 40 40 H 1.08999 * 109.69521 * 101.64395 * 21 5 4 41 41 H 1.09005 * 109.69529 * 341.06083 * 21 5 4 42 42 H 1.09004 * 113.75996 * 23.24203 * 22 2 1 43 43 H 1.09002 * 113.82312 * 251.80966 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0211 0.8793 -1.0360 5 7 3.2515 1.8180 -2.1422 6 6 3.9416 1.1515 -3.2683 7 6 4.4746 2.1356 -4.3250 8 6 3.5003 3.2394 -4.6412 9 6 3.7933 4.4433 -3.7178 10 1 4.8711 4.5967 -3.6648 11 6 3.1397 5.6949 -4.3070 12 6 3.7732 6.0139 -5.6367 13 1 4.5661 5.3892 -6.0208 14 6 3.3449 7.1068 -6.3599 15 7 2.3838 7.8712 -5.8891 16 14 4.1306 7.5027 -8.0077 17 1 5.1807 6.4969 -8.3097 18 1 3.0942 7.4700 -9.0708 19 1 4.7411 8.8552 -7.9529 20 6 3.2766 4.2257 -2.3711 21 6 3.9194 3.0101 -1.6782 22 6 2.0017 -0.2266 -1.3642 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8901 26 1 2.4460 1.6801 0.9483 27 1 1.3023 2.1212 -0.3935 28 1 3.9458 0.5068 -0.5953 29 1 4.7782 0.5751 -2.8737 30 1 3.2439 0.4659 -3.7493 31 1 5.4003 2.5781 -3.9573 32 1 4.6909 1.5847 -5.2403 33 1 2.4820 2.8889 -4.4721 34 1 3.6164 3.5409 -5.6822 35 1 3.2821 6.5340 -3.6260 36 1 2.0733 5.5168 -4.4460 37 1 2.0822 8.6400 -6.3981 38 1 3.4699 5.1154 -1.7718 39 1 2.1994 4.0694 -2.4283 40 1 4.9783 2.9601 -1.9316 41 1 3.8035 3.0992 -0.5980 42 1 1.3042 0.0406 -2.1581 43 1 2.4505 -1.2101 -1.5038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261008694.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:39 Heat of formation + Delta-G solvation = 5.885598 kcal Electronic energy + Delta-G solvation = -19490.727401 eV Core-core repulsion = 16763.368316 eV Total energy + Delta-G solvation = -2727.359085 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.24296 -39.46899 -36.22184 -34.38936 -33.27156 -31.03310 -29.54452 -27.39541 -26.49659 -26.06386 -24.00711 -23.30821 -21.03246 -20.81319 -20.23341 -18.42216 -17.51452 -16.80561 -16.70703 -16.36717 -15.65140 -15.36399 -15.21727 -14.83642 -14.43158 -13.94657 -13.87218 -13.71050 -13.69403 -13.56078 -13.05537 -12.81344 -12.60733 -12.49647 -12.30132 -12.19663 -12.01472 -11.69282 -11.63709 -11.42938 -11.30788 -11.15388 -10.83530 -10.72437 -10.50170 -9.85058 -9.06841 -8.15741 -6.24655 1.39649 1.39929 1.52934 2.42792 2.79842 3.15163 3.17419 3.45667 3.91423 4.04407 4.11369 4.18912 4.21261 4.29153 4.34418 4.38664 4.53878 4.58031 4.63883 4.69312 4.76655 4.78463 4.82392 4.86573 4.93209 4.98640 5.14479 5.16327 5.26338 5.29653 5.33649 5.41255 5.47588 5.51059 5.64770 5.71420 5.86528 5.96146 6.03395 6.28147 6.33523 6.38962 6.92059 7.43438 8.96528 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.037064 B = 0.004519 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.265723 B = 6194.289814 C = 6468.981601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.496 5.496 3 C 0.013 3.987 4 C 0.057 3.943 5 N -0.547 5.547 6 C 0.073 3.927 7 C -0.113 4.113 8 C -0.089 4.089 9 C -0.069 4.069 10 H 0.043 0.957 11 C 0.031 3.969 12 C -0.524 4.524 13 H 0.061 0.939 14 C -0.004 4.004 15 N -0.937 5.937 16 Si 0.959 3.041 17 H -0.261 1.261 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.097 4.097 21 C 0.077 3.923 22 C 0.017 3.983 23 H 0.032 0.968 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.045 0.955 35 H -0.018 1.018 36 H -0.016 1.016 37 H 0.261 0.739 38 H 0.046 0.954 39 H 0.049 0.951 40 H 0.042 0.958 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.227 -17.000 9.992 19.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 N -0.219 5.219 3 C -0.116 4.116 4 C -0.051 4.051 5 N -0.273 5.273 6 C -0.054 4.054 7 C -0.151 4.151 8 C -0.127 4.127 9 C -0.087 4.087 10 H 0.062 0.938 11 C -0.006 4.006 12 C -0.562 4.562 13 H 0.079 0.921 14 C -0.200 4.200 15 N -0.578 5.578 16 Si 0.785 3.215 17 H -0.185 1.185 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.135 4.135 21 C -0.051 4.051 22 C -0.112 4.112 23 H 0.051 0.949 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.112 0.888 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.001 0.999 36 H 0.003 0.997 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.858 -17.177 10.325 20.060 hybrid contribution 0.373 1.254 -1.288 1.836 sum 1.230 -15.923 9.037 18.350 Atomic orbital electron populations 1.22849 0.88691 1.02824 1.01335 1.68464 1.10146 1.18600 1.24695 1.23994 0.96908 0.91459 0.99229 1.23550 0.97304 0.93049 0.91218 1.60921 1.51947 1.06193 1.08269 1.22278 0.96773 0.95413 0.90958 1.21373 0.98348 0.96645 0.98716 1.21121 0.98963 0.94019 0.98566 1.20031 0.98440 0.95292 0.94955 0.93833 1.19100 0.94359 0.92597 0.94497 1.21694 1.19002 1.10570 1.04974 0.92113 1.25957 0.95746 0.96318 1.02013 1.70120 1.30169 1.17453 1.40103 0.85478 0.78558 0.78182 0.79330 1.18473 1.20592 1.20606 1.20452 1.00346 0.97008 0.95677 1.21616 0.95842 0.89129 0.98517 1.24070 0.96825 0.99361 0.90978 0.94885 0.90376 0.90912 0.88849 0.91191 0.90600 0.93895 0.90682 0.92867 0.90706 0.92959 0.93632 0.99946 0.99718 0.93041 0.93532 0.93210 0.93942 0.90441 0.90871 0.88551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.14 9.65 127.69 1.23 1.09 16 2 N -0.50 -10.00 6.55 -933.89 -6.12 -16.12 16 3 C 0.01 0.27 6.81 86.41 0.59 0.86 16 4 C 0.06 1.18 3.17 46.48 0.15 1.33 16 5 N -0.55 -13.60 3.96 -875.45 -3.46 -17.06 16 6 C 0.07 1.70 5.15 86.41 0.45 2.15 16 7 C -0.11 -3.20 5.28 30.12 0.16 -3.04 16 8 C -0.09 -3.33 4.89 30.33 0.15 -3.18 16 9 C -0.07 -2.84 1.71 -12.46 -0.02 -2.87 16 10 H 0.04 1.83 7.58 -2.39 -0.02 1.81 16 11 C 0.03 1.70 4.38 29.85 0.13 1.83 16 12 C -0.52 -30.04 8.12 25.60 0.21 -29.84 16 13 H 0.06 3.35 7.16 -2.91 -0.02 3.33 16 14 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 15 N -0.94 -58.28 13.29 21.45 0.28 -58.00 16 16 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 17 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 20 C -0.10 -3.39 4.56 28.74 0.13 -3.26 16 21 C 0.08 2.08 5.23 87.12 0.46 2.53 16 22 C 0.02 0.32 7.19 86.37 0.62 0.94 16 23 H 0.03 0.62 7.63 -2.39 -0.02 0.60 16 24 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.07 1.62 7.93 -2.39 -0.02 1.60 16 28 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.04 0.88 8.02 -2.39 -0.02 0.86 16 30 H 0.07 1.65 7.91 -2.38 -0.02 1.63 16 31 H 0.05 1.53 6.66 -2.39 -0.02 1.52 16 32 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.05 1.99 7.78 -2.38 -0.02 1.97 16 34 H 0.04 1.93 6.58 -2.38 -0.02 1.91 16 35 H -0.02 -1.05 8.07 -2.39 -0.02 -1.07 16 36 H -0.02 -0.92 8.14 -2.38 -0.02 -0.94 16 37 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 38 H 0.05 1.66 8.07 -2.39 -0.02 1.64 16 39 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 40 H 0.04 1.14 6.79 -2.39 -0.02 1.12 16 41 H 0.08 1.81 6.98 -2.38 -0.02 1.80 16 42 H 0.07 1.54 7.63 -2.38 -0.02 1.52 16 43 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -64.27 324.42 -1.62 -65.89 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 0.94 Total: 9.50 kcal Atomic # 6 Polarization: -35.90 SS G_CDS: 4.71 Total: -31.19 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -9.30 Total: -91.17 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -64.27 -1.62 -65.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261008694.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.780 kcal (2) G-P(sol) polarization free energy of solvation -64.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds