Wall clock time and date at job start Mon Mar 30 2020 03:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47964 * 111.00186 * 2 1 4 4 C 1.53934 * 86.17864 * 222.41817 * 3 2 1 5 5 N 1.46899 * 113.73357 * 138.08037 * 4 3 2 6 6 C 1.44268 * 111.00390 * 58.01218 * 5 4 3 7 7 C 1.54069 * 111.98116 * 219.31185 * 6 5 4 8 8 C 1.54285 * 112.28952 * 318.91279 * 7 6 5 9 9 C 1.50516 * 112.97161 * 318.30061 * 8 7 6 10 10 H 1.08998 * 109.64047 * 332.40584 * 9 8 7 11 11 C 1.53005 * 109.52961 * 212.01273 * 9 8 7 12 12 C 1.50703 * 109.46877 * 65.68781 * 11 9 8 13 13 H 1.07992 * 120.00097 * 359.97438 * 12 11 9 14 14 C 1.37878 * 119.99472 * 179.97438 * 12 11 9 15 15 N 1.31514 * 120.00099 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99831 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46790 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47169 * 120.00103 * 16 14 12 19 19 H 1.48499 * 109.47241 * 240.00040 * 16 14 12 20 20 C 1.54508 * 108.82784 * 92.24257 * 9 8 7 21 21 C 1.45863 * 111.53286 * 282.70803 * 20 9 8 22 22 C 1.47954 * 111.00266 * 260.63814 * 2 1 3 23 23 H 1.08999 * 109.46930 * 59.99921 * 1 2 3 24 24 H 1.08992 * 109.47011 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46816 * 300.00050 * 1 2 3 26 26 H 1.08994 * 113.76034 * 108.10182 * 3 2 1 27 27 H 1.09003 * 113.85754 * 336.74520 * 3 2 1 28 28 H 1.09004 * 113.73068 * 269.25084 * 4 3 2 29 29 H 1.09002 * 108.97553 * 339.95802 * 6 5 4 30 30 H 1.09005 * 108.98112 * 98.75186 * 6 5 4 31 31 H 1.09000 * 108.91658 * 79.63715 * 7 6 5 32 32 H 1.09001 * 108.91397 * 198.18823 * 7 6 5 33 33 H 1.09007 * 108.76846 * 79.21533 * 8 7 6 34 34 H 1.08995 * 108.77106 * 197.37951 * 8 7 6 35 35 H 1.08998 * 109.46478 * 185.68683 * 11 9 8 36 36 H 1.08998 * 109.47033 * 305.68704 * 11 9 8 37 37 H 0.97005 * 119.99679 * 179.97438 * 15 14 12 38 38 H 1.09002 * 109.05647 * 162.19914 * 20 9 8 39 39 H 1.09004 * 109.05690 * 43.21441 * 20 9 8 40 40 H 1.09000 * 108.79097 * 182.24753 * 21 20 9 41 41 H 1.09000 * 108.79023 * 300.47375 * 21 20 9 42 42 H 1.09001 * 113.75764 * 23.26681 * 22 2 1 43 43 H 1.09000 * 113.76292 * 251.90062 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0211 0.8792 -1.0360 5 7 3.2516 1.8179 -2.1422 6 6 3.7078 3.0950 -1.6500 7 6 3.0841 4.2693 -2.4284 8 6 3.0200 3.9972 -3.9457 9 6 4.2662 3.3423 -4.4783 10 1 5.1186 3.6174 -3.8573 11 6 4.5088 3.7993 -5.9182 12 6 4.8153 5.2748 -5.9319 13 1 4.8346 5.8309 -5.0064 14 6 5.0710 5.9146 -7.1262 15 7 5.0469 5.2373 -8.2533 16 14 5.4501 7.7436 -7.1435 17 1 5.4154 8.2694 -5.7551 18 1 6.7998 7.9639 -7.7221 19 1 4.4370 8.4514 -7.9669 20 6 4.0762 1.8092 -4.4468 21 6 4.2401 1.2770 -3.0987 22 6 1.9993 -0.2247 -1.3629 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.4460 1.6802 0.9482 27 1 1.3023 2.1212 -0.3936 28 1 3.9459 0.5068 -0.5953 29 1 3.4400 3.1854 -0.5973 30 1 4.7926 3.1446 -1.7451 31 1 2.0739 4.4423 -2.0574 32 1 3.6807 5.1648 -2.2548 33 1 2.1677 3.3491 -4.1501 34 1 2.8707 4.9434 -4.4657 35 1 5.3516 3.2492 -6.3367 36 1 3.6173 3.6078 -6.5153 37 1 5.2265 5.6876 -9.0936 38 1 4.8119 1.3459 -5.1043 39 1 3.0759 1.5671 -4.8059 40 1 4.1371 0.1925 -3.1344 41 1 5.2416 1.5209 -2.7443 42 1 1.3011 0.0440 -2.1556 43 1 2.4460 -1.2089 -1.5036 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261008695.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:43 Heat of formation + Delta-G solvation = 27.209305 kcal Electronic energy + Delta-G solvation = -19517.257164 eV Core-core repulsion = 16790.822744 eV Total energy + Delta-G solvation = -2726.434420 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.38030 -38.18016 -34.61081 -32.36817 -32.06021 -30.04455 -27.98387 -26.43018 -25.23546 -24.30405 -23.13509 -21.50992 -20.24488 -19.60845 -18.55582 -16.49825 -16.20391 -15.92852 -15.44181 -14.59243 -14.50489 -14.28034 -13.89875 -13.55926 -13.16816 -12.78141 -12.65478 -12.49356 -12.22064 -11.94433 -11.76763 -11.42419 -11.06588 -11.00256 -10.87916 -10.70455 -10.53834 -10.38602 -10.30949 -10.01172 -9.70146 -9.46169 -9.05484 -8.99854 -8.81754 -8.29975 -8.15472 -5.94627 -3.95358 3.33139 3.40893 3.44650 3.71575 4.06938 4.33389 4.49906 4.90303 4.94020 5.08895 5.20175 5.27856 5.31499 5.41148 5.43682 5.49001 5.57524 5.62195 5.66483 5.68553 5.75490 5.90056 6.01664 6.04720 6.11867 6.16294 6.19987 6.26857 6.48773 6.64711 6.83896 6.85065 6.95122 7.12642 7.18818 7.33091 7.36185 7.44069 7.76735 7.94051 8.07435 8.51034 9.11917 9.67829 11.16795 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.043400 B = 0.004458 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.001402 B = 6279.630588 C = 6543.454680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.489 5.489 3 C 0.010 3.990 4 C 0.051 3.949 5 N -0.517 5.517 6 C 0.056 3.944 7 C -0.106 4.106 8 C -0.098 4.098 9 C -0.073 4.073 10 H 0.051 0.949 11 C 0.027 3.973 12 C -0.511 4.511 13 H 0.056 0.944 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.887 3.113 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.116 4.116 21 C 0.065 3.935 22 C 0.015 3.985 23 H 0.038 0.962 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.041 0.959 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.012 0.988 36 H 0.015 0.985 37 H 0.258 0.742 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.033 0.967 42 H 0.081 0.919 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.033 -9.054 15.114 18.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 N -0.211 5.211 3 C -0.119 4.119 4 C -0.059 4.059 5 N -0.242 5.242 6 C -0.072 4.072 7 C -0.145 4.145 8 C -0.135 4.135 9 C -0.092 4.092 10 H 0.069 0.931 11 C -0.010 4.010 12 C -0.549 4.549 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.715 3.285 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.211 1.211 20 C -0.154 4.154 21 C -0.062 4.062 22 C -0.114 4.114 23 H 0.057 0.943 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.102 0.898 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.031 0.969 36 H 0.033 0.967 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.051 0.949 42 H 0.100 0.900 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.322 -9.423 15.228 18.991 hybrid contribution 0.638 1.450 -0.355 1.623 sum -5.684 -7.973 14.873 17.807 Atomic orbital electron populations 1.22829 0.89484 1.02221 1.01194 1.68416 1.09279 1.18596 1.24839 1.24035 0.97200 0.91719 0.98975 1.23595 0.96945 0.93813 0.91506 1.61915 1.46275 1.02375 1.13645 1.21907 0.98110 0.89736 0.97463 1.21937 0.99514 0.95983 0.97032 1.21231 0.97964 1.01524 0.92801 1.20963 0.96707 0.91545 0.99943 0.93077 1.19178 0.96640 0.95619 0.89578 1.21300 1.46626 0.94390 0.92619 0.92613 1.25018 0.95812 0.97881 0.95821 1.69980 1.50247 1.35691 0.97743 0.86616 0.77859 0.86012 0.77999 1.19786 1.21157 1.21123 1.20710 1.01829 0.98153 0.94660 1.21020 0.92648 0.98309 0.94244 1.24051 0.97229 0.99124 0.91025 0.94328 0.91316 0.91573 0.89774 0.90197 0.91119 0.92654 0.94108 0.93254 0.92556 0.93321 0.91109 0.96919 0.96668 0.93211 0.92041 0.92099 0.92464 0.94870 0.90042 0.89771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.07 9.65 60.06 0.58 0.51 16 2 N -0.49 -5.32 6.56 -246.77 -1.62 -6.94 16 3 C 0.01 0.10 6.20 -2.77 -0.02 0.09 16 4 C 0.05 0.59 3.14 -69.41 -0.22 0.37 16 5 N -0.52 -7.01 4.19 -232.96 -0.98 -7.98 16 6 C 0.06 0.78 4.97 -4.67 -0.02 0.76 16 7 C -0.11 -1.67 6.14 -25.50 -0.16 -1.82 16 8 C -0.10 -1.85 4.80 -27.30 -0.13 -1.98 16 9 C -0.07 -1.48 1.81 -91.07 -0.17 -1.65 16 10 H 0.05 1.07 7.14 -51.93 -0.37 0.70 16 11 C 0.03 0.69 4.36 -27.88 -0.12 0.57 16 12 C -0.51 -14.28 8.00 -34.44 -0.28 -14.55 16 13 H 0.06 1.52 7.47 -52.49 -0.39 1.13 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 16 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 C -0.12 -1.98 4.92 -29.32 -0.14 -2.13 16 21 C 0.06 0.93 4.93 -6.70 -0.03 0.90 16 22 C 0.01 0.16 7.57 -2.77 -0.02 0.14 16 23 H 0.04 0.36 7.62 -51.93 -0.40 -0.03 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 0.89 7.93 -51.93 -0.41 0.48 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.67 6.47 -51.93 -0.34 0.33 16 30 H 0.04 0.60 6.50 -51.93 -0.34 0.26 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.91 7.38 -51.92 -0.38 0.53 16 34 H 0.07 1.53 6.63 -51.93 -0.34 1.18 16 35 H 0.01 0.34 8.06 -51.93 -0.42 -0.07 16 36 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.06 1.06 7.96 -51.93 -0.41 0.65 16 39 H 0.06 1.06 7.58 -51.93 -0.39 0.67 16 40 H 0.06 0.74 7.66 -51.93 -0.40 0.34 16 41 H 0.03 0.49 7.24 -51.93 -0.38 0.11 16 42 H 0.08 0.95 7.62 -51.93 -0.40 0.55 16 43 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 323.55 15.07 4.88 4.88 Total: -1.00 -29.36 323.55 -10.71 -40.07 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -7.88 Total: -3.07 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -0.82 Total: -17.32 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: -1.86 Total: -41.25 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.36 -10.71 -40.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261008695.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.277 kcal (2) G-P(sol) polarization free energy of solvation -29.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds