Wall clock time and date at job start Mon Mar 30 2020 03:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47964 * 111.00186 * 2 1 4 4 C 1.53934 * 86.17864 * 222.41817 * 3 2 1 5 5 N 1.46899 * 113.73357 * 138.08037 * 4 3 2 6 6 C 1.44268 * 111.00390 * 58.01218 * 5 4 3 7 7 C 1.54069 * 111.98116 * 219.31185 * 6 5 4 8 8 C 1.54285 * 112.28952 * 318.91279 * 7 6 5 9 9 C 1.50516 * 112.97161 * 318.30061 * 8 7 6 10 10 H 1.08998 * 109.64047 * 332.40584 * 9 8 7 11 11 C 1.53005 * 109.52961 * 212.01273 * 9 8 7 12 12 C 1.50703 * 109.46877 * 65.68781 * 11 9 8 13 13 H 1.07992 * 120.00097 * 359.97438 * 12 11 9 14 14 C 1.37878 * 119.99472 * 179.97438 * 12 11 9 15 15 N 1.31514 * 120.00099 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99831 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46790 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47169 * 120.00103 * 16 14 12 19 19 H 1.48499 * 109.47241 * 240.00040 * 16 14 12 20 20 C 1.54508 * 108.82784 * 92.24257 * 9 8 7 21 21 C 1.45863 * 111.53286 * 282.70803 * 20 9 8 22 22 C 1.47954 * 111.00266 * 260.63814 * 2 1 3 23 23 H 1.08999 * 109.46930 * 59.99921 * 1 2 3 24 24 H 1.08992 * 109.47011 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46816 * 300.00050 * 1 2 3 26 26 H 1.08994 * 113.76034 * 108.10182 * 3 2 1 27 27 H 1.09003 * 113.85754 * 336.74520 * 3 2 1 28 28 H 1.09004 * 113.73068 * 269.25084 * 4 3 2 29 29 H 1.09002 * 108.97553 * 339.95802 * 6 5 4 30 30 H 1.09005 * 108.98112 * 98.75186 * 6 5 4 31 31 H 1.09000 * 108.91658 * 79.63715 * 7 6 5 32 32 H 1.09001 * 108.91397 * 198.18823 * 7 6 5 33 33 H 1.09007 * 108.76846 * 79.21533 * 8 7 6 34 34 H 1.08995 * 108.77106 * 197.37951 * 8 7 6 35 35 H 1.08998 * 109.46478 * 185.68683 * 11 9 8 36 36 H 1.08998 * 109.47033 * 305.68704 * 11 9 8 37 37 H 0.97005 * 119.99679 * 179.97438 * 15 14 12 38 38 H 1.09002 * 109.05647 * 162.19914 * 20 9 8 39 39 H 1.09004 * 109.05690 * 43.21441 * 20 9 8 40 40 H 1.09000 * 108.79097 * 182.24753 * 21 20 9 41 41 H 1.09000 * 108.79023 * 300.47375 * 21 20 9 42 42 H 1.09001 * 113.75764 * 23.26681 * 22 2 1 43 43 H 1.09000 * 113.76292 * 251.90062 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0211 0.8792 -1.0360 5 7 3.2516 1.8179 -2.1422 6 6 3.7078 3.0950 -1.6500 7 6 3.0841 4.2693 -2.4284 8 6 3.0200 3.9972 -3.9457 9 6 4.2662 3.3423 -4.4783 10 1 5.1186 3.6174 -3.8573 11 6 4.5088 3.7993 -5.9182 12 6 4.8153 5.2748 -5.9319 13 1 4.8346 5.8309 -5.0064 14 6 5.0710 5.9146 -7.1262 15 7 5.0469 5.2373 -8.2533 16 14 5.4501 7.7436 -7.1435 17 1 5.4154 8.2694 -5.7551 18 1 6.7998 7.9639 -7.7221 19 1 4.4370 8.4514 -7.9669 20 6 4.0762 1.8092 -4.4468 21 6 4.2401 1.2770 -3.0987 22 6 1.9993 -0.2247 -1.3629 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.4460 1.6802 0.9482 27 1 1.3023 2.1212 -0.3936 28 1 3.9459 0.5068 -0.5953 29 1 3.4400 3.1854 -0.5973 30 1 4.7926 3.1446 -1.7451 31 1 2.0739 4.4423 -2.0574 32 1 3.6807 5.1648 -2.2548 33 1 2.1677 3.3491 -4.1501 34 1 2.8707 4.9434 -4.4657 35 1 5.3516 3.2492 -6.3367 36 1 3.6173 3.6078 -6.5153 37 1 5.2265 5.6876 -9.0936 38 1 4.8119 1.3459 -5.1043 39 1 3.0759 1.5671 -4.8059 40 1 4.1371 0.1925 -3.1344 41 1 5.2416 1.5209 -2.7443 42 1 1.3011 0.0440 -2.1556 43 1 2.4460 -1.2089 -1.5036 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261008695.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:42 Heat of formation + Delta-G solvation = 7.444098 kcal Electronic energy + Delta-G solvation = -19518.114248 eV Core-core repulsion = 16790.822744 eV Total energy + Delta-G solvation = -2727.291504 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.32892 -39.42526 -36.16606 -34.32216 -33.35887 -31.18004 -29.56058 -27.34081 -26.69898 -25.85706 -24.06741 -23.26763 -21.45566 -20.62387 -20.01657 -18.40763 -17.47061 -16.81190 -16.57385 -16.49682 -15.62324 -15.33947 -15.20119 -14.94504 -14.31395 -14.17766 -14.10492 -13.69696 -13.61555 -13.44750 -13.01899 -12.80964 -12.70695 -12.39374 -12.23702 -12.18686 -11.88848 -11.71301 -11.69430 -11.41212 -11.23820 -11.11863 -10.94306 -10.63319 -10.51221 -9.85235 -9.23565 -8.16092 -6.24840 1.39347 1.39768 1.52687 2.42504 2.79237 3.13972 3.17081 3.46317 3.90119 4.04649 4.08532 4.20118 4.24333 4.33086 4.42414 4.48219 4.52285 4.54430 4.63185 4.64277 4.72047 4.78888 4.81160 4.89245 4.96622 4.99684 5.10723 5.15638 5.19858 5.34890 5.35802 5.37889 5.42880 5.53261 5.64133 5.66307 5.92154 5.95418 6.04599 6.18919 6.31347 6.34487 6.91652 7.43124 8.96084 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.043400 B = 0.004458 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.001402 B = 6279.630588 C = 6543.454680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.497 5.497 3 C 0.014 3.986 4 C 0.050 3.950 5 N -0.524 5.524 6 C 0.061 3.939 7 C -0.101 4.101 8 C -0.090 4.090 9 C -0.064 4.064 10 H 0.046 0.954 11 C 0.032 3.968 12 C -0.525 4.525 13 H 0.059 0.941 14 C -0.003 4.003 15 N -0.936 5.936 16 Si 0.959 3.041 17 H -0.262 1.262 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.105 4.105 21 C 0.069 3.931 22 C 0.017 3.983 23 H 0.034 0.966 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.033 0.967 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.037 0.963 35 H -0.016 1.016 36 H -0.014 1.014 37 H 0.261 0.739 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.034 0.966 42 H 0.073 0.927 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.313 -8.976 17.317 20.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 N -0.219 5.219 3 C -0.115 4.115 4 C -0.058 4.058 5 N -0.248 5.248 6 C -0.068 4.068 7 C -0.139 4.139 8 C -0.128 4.128 9 C -0.083 4.083 10 H 0.065 0.935 11 C -0.005 4.005 12 C -0.563 4.563 13 H 0.077 0.923 14 C -0.200 4.200 15 N -0.577 5.577 16 Si 0.784 3.216 17 H -0.185 1.185 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.143 4.143 21 C -0.058 4.058 22 C -0.112 4.112 23 H 0.053 0.947 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.114 0.886 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.051 0.949 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.003 0.997 36 H 0.004 0.996 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.052 0.948 42 H 0.092 0.908 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.609 -9.352 17.451 20.873 hybrid contribution 0.689 1.384 -1.074 1.882 sum -5.920 -7.969 16.377 19.151 Atomic orbital electron populations 1.22855 0.88569 1.02818 1.01454 1.68429 1.10271 1.18666 1.24569 1.24028 0.96697 0.91615 0.99112 1.23653 0.97440 0.93648 0.91075 1.61828 1.45801 1.02735 1.14483 1.21841 0.97405 0.89157 0.98398 1.21875 1.00744 0.96923 0.94371 1.21093 0.96982 0.99469 0.95248 1.20790 0.97274 0.94100 0.96094 0.93509 1.19085 0.94010 0.94786 0.92604 1.21664 1.46217 0.95527 0.92856 0.92273 1.25941 0.95626 1.02988 0.95410 1.70115 1.51315 1.37851 0.98455 0.85489 0.77727 0.79872 0.78534 1.18542 1.20555 1.20582 1.20588 1.01352 0.95553 0.96820 1.20878 0.92974 0.99323 0.92623 1.24027 0.96887 0.99309 0.90982 0.94687 0.90620 0.90682 0.88615 0.90569 0.90580 0.90204 0.94891 0.91666 0.92805 0.93397 0.94384 0.99717 0.99575 0.93012 0.92679 0.92530 0.90397 0.94796 0.90840 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.13 9.65 127.69 1.23 1.11 16 2 N -0.50 -9.51 6.56 -934.64 -6.13 -15.63 16 3 C 0.01 0.26 6.20 86.40 0.54 0.80 16 4 C 0.05 1.03 3.14 46.48 0.15 1.17 16 5 N -0.52 -13.04 4.19 -890.94 -3.73 -16.77 16 6 C 0.06 1.54 4.97 87.16 0.43 1.97 16 7 C -0.10 -3.00 6.14 31.39 0.19 -2.81 16 8 C -0.09 -3.44 4.80 30.23 0.15 -3.29 16 9 C -0.06 -2.65 1.81 -11.08 -0.02 -2.67 16 10 H 0.05 1.97 7.14 -2.39 -0.02 1.95 16 11 C 0.03 1.73 4.36 29.85 0.13 1.86 16 12 C -0.52 -30.03 8.00 25.60 0.20 -29.83 16 13 H 0.06 3.27 7.47 -2.91 -0.02 3.25 16 14 C 0.00 -0.16 5.46 84.65 0.46 0.31 16 15 N -0.94 -57.99 13.29 21.45 0.28 -57.70 16 16 Si 0.96 44.93 29.54 68.60 2.03 46.95 16 17 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 20 C -0.11 -3.60 4.92 28.92 0.14 -3.46 16 21 C 0.07 1.87 4.93 83.94 0.41 2.28 16 22 C 0.02 0.33 7.57 86.40 0.65 0.99 16 23 H 0.03 0.59 7.62 -2.39 -0.02 0.57 16 24 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.08 1.48 7.93 -2.39 -0.02 1.46 16 28 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.08 1.66 6.47 -2.39 -0.02 1.65 16 30 H 0.03 0.90 6.50 -2.38 -0.02 0.89 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.05 1.80 7.38 -2.38 -0.02 1.78 16 34 H 0.04 1.67 6.63 -2.39 -0.02 1.66 16 35 H -0.02 -0.91 8.06 -2.39 -0.02 -0.93 16 36 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 37 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 38 H 0.05 1.93 7.96 -2.39 -0.02 1.92 16 39 H 0.06 1.97 7.58 -2.38 -0.02 1.95 16 40 H 0.08 1.82 7.66 -2.39 -0.02 1.80 16 41 H 0.03 0.93 7.24 -2.39 -0.02 0.91 16 42 H 0.07 1.57 7.62 -2.39 -0.02 1.55 16 43 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -63.85 323.55 -1.93 -65.78 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 0.94 Total: 8.95 kcal Atomic # 6 Polarization: -36.24 SS G_CDS: 4.67 Total: -31.57 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -9.57 Total: -90.11 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -63.85 -1.93 -65.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261008695.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.222 kcal (2) G-P(sol) polarization free energy of solvation -63.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds