Wall clock time and date at job start Mon Mar 30 2020 04:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.44178 * 111.00168 * 2 1 4 4 C 1.54320 * 112.61958 * 217.52976 * 3 2 1 5 5 C 1.54318 * 111.72472 * 318.91371 * 4 3 2 6 6 N 1.44184 * 112.61032 * 318.92406 * 5 4 3 7 7 C 1.46897 * 111.00095 * 217.52331 * 6 5 4 8 8 H 1.08998 * 110.01861 * 44.85171 * 7 6 5 9 9 C 1.54263 * 110.03214 * 283.46229 * 7 6 5 10 10 C 1.54892 * 104.19526 * 217.10798 * 9 7 6 11 11 C 1.54884 * 102.75183 * 37.94040 * 10 9 7 12 12 C 1.53873 * 110.03264 * 166.29519 * 7 6 5 13 13 H 1.09002 * 110.03479 * 238.57328 * 12 7 6 14 14 C 1.50707 * 110.03291 * 0.02562 * 12 7 6 15 15 H 1.07999 * 119.99553 * 354.47122 * 14 12 7 16 16 C 1.37872 * 120.00232 * 174.47652 * 14 12 7 17 17 N 1.31515 * 119.99943 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 120.00108 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46960 * 60.00435 * 18 16 14 20 20 H 1.48502 * 109.47077 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47281 * 300.00190 * 18 16 14 22 22 C 1.48082 * 109.89664 * 94.35081 * 6 5 4 23 23 C 1.46093 * 112.16042 * 279.63303 * 22 6 5 24 24 H 1.09000 * 109.47162 * 297.43480 * 1 2 3 25 25 H 1.09000 * 109.47258 * 57.44174 * 1 2 3 26 26 H 1.09002 * 109.46908 * 177.43639 * 1 2 3 27 27 H 1.09000 * 108.85471 * 96.71933 * 3 2 1 28 28 H 1.08999 * 108.85212 * 338.33494 * 3 2 1 29 29 H 1.09002 * 109.03092 * 198.33686 * 4 3 2 30 30 H 1.08999 * 108.97471 * 79.45204 * 4 3 2 31 31 H 1.08998 * 108.85698 * 198.11923 * 5 4 3 32 32 H 1.08996 * 108.85485 * 79.72773 * 5 4 3 33 33 H 1.08998 * 110.48877 * 335.78282 * 9 7 6 34 34 H 1.09000 * 110.48996 * 98.43035 * 9 7 6 35 35 H 1.08999 * 110.76147 * 156.26024 * 10 9 7 36 36 H 1.09004 * 110.75250 * 279.62804 * 10 9 7 37 37 H 1.09002 * 110.48788 * 80.73867 * 11 10 9 38 38 H 1.09005 * 110.49079 * 203.25081 * 11 10 9 39 39 H 0.97002 * 120.00186 * 180.02562 * 17 16 14 40 40 H 1.08996 * 108.94710 * 158.94435 * 22 6 5 41 41 H 1.09001 * 108.94745 * 40.32478 * 22 6 5 42 42 H 1.08997 * 108.94642 * 181.36745 * 23 22 6 43 43 H 1.08998 * 108.95068 * 299.99957 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9857 1.3460 0.0000 4 6 3.2530 1.4952 -0.8678 5 6 4.2081 0.2955 -0.6950 6 7 4.3130 -0.1365 0.6766 7 6 5.6864 -0.5491 0.9951 8 1 6.3957 0.1767 0.5975 9 6 5.9699 -1.9446 0.4018 10 6 6.8579 -2.6364 1.4658 11 6 6.2410 -2.1442 2.7985 12 6 5.8587 -0.6759 2.5189 13 1 6.6522 -0.0118 2.8615 14 6 4.5652 -0.3383 3.2146 15 1 3.7244 0.0268 2.6436 16 6 4.4553 -0.4956 4.5799 17 7 5.4795 -0.9397 5.2752 18 14 2.8522 -0.0764 5.4423 19 1 1.7602 -0.9209 4.8950 20 1 2.9925 -0.3305 6.8987 21 1 2.5297 1.3558 5.2190 22 6 3.3554 -1.2365 0.9331 23 6 1.9997 -0.7441 1.1652 24 1 -0.3633 0.4735 0.9121 25 1 -0.3634 0.5530 -0.8661 26 1 -0.3633 -1.0267 -0.0460 27 1 2.2246 1.6316 1.0244 28 1 1.2169 2.0184 -0.3808 29 1 3.7744 2.4087 -0.5814 30 1 2.9591 1.5675 -1.9149 31 1 5.1983 0.5793 -1.0515 32 1 3.8431 -0.5351 -1.2989 33 1 5.0402 -2.4965 0.2637 34 1 6.5059 -1.8558 -0.5431 35 1 6.7853 -3.7208 1.3838 36 1 7.8939 -2.3097 1.3758 37 1 5.3550 -2.7282 3.0474 38 1 6.9740 -2.2030 3.6030 39 1 5.4021 -1.0507 6.2358 40 1 3.6841 -1.7946 1.8098 41 1 3.3464 -1.9057 0.0728 42 1 1.3459 -1.5914 1.3716 43 1 2.0064 -0.0846 2.0331 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261074221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:21 Heat of formation + Delta-G solvation = 27.242056 kcal Electronic energy + Delta-G solvation = -20836.379694 eV Core-core repulsion = 18109.946695 eV Total energy + Delta-G solvation = -2726.433000 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.51091 -37.16053 -34.15971 -32.31385 -31.92455 -29.03597 -28.10192 -26.41298 -24.69605 -24.20055 -23.45079 -20.92200 -19.63218 -19.15363 -18.19129 -16.63445 -15.62847 -14.94745 -14.84114 -14.39826 -14.30978 -14.09110 -13.87289 -13.06394 -12.73947 -12.66444 -12.39063 -12.14550 -11.71185 -11.37577 -11.14297 -10.90283 -10.85742 -10.76342 -10.56498 -10.51085 -10.43406 -10.06553 -9.96138 -9.73361 -9.68438 -9.45276 -8.97894 -8.49756 -8.21673 -7.88986 -7.20095 -5.84232 -3.79602 3.36531 3.42624 3.44616 4.34718 4.54855 4.75794 5.28742 5.41014 5.45293 5.52917 5.60267 5.68131 5.72793 5.79336 5.84873 5.93741 5.99383 6.05831 6.11484 6.18184 6.24531 6.34299 6.40753 6.49496 6.51705 6.54812 6.60271 6.75865 6.77669 6.86585 6.96947 7.02940 7.29822 7.43324 7.48738 7.56641 7.77913 8.01640 8.08414 8.20745 8.24634 8.75007 9.28639 9.81054 11.26487 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016827 B = 0.011150 C = 0.007700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.572774 B = 2510.579378 C = 3635.626031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.541 5.541 3 C 0.064 3.936 4 C -0.099 4.099 5 C 0.063 3.937 6 N -0.500 5.500 7 C 0.091 3.909 8 H 0.058 0.942 9 C -0.155 4.155 10 C -0.131 4.131 11 C -0.088 4.088 12 C 0.050 3.950 13 H 0.023 0.977 14 C -0.494 4.494 15 H 0.092 0.908 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.877 3.123 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.280 1.280 22 C 0.064 3.936 23 C 0.060 3.940 24 H 0.020 0.980 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.032 0.968 33 H 0.066 0.934 34 H 0.041 0.959 35 H 0.044 0.956 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.254 0.746 40 H 0.109 0.891 41 H 0.021 0.979 42 H 0.061 0.939 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.788 0.346 -10.351 11.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.266 5.266 3 C -0.065 4.065 4 C -0.138 4.138 5 C -0.067 4.067 6 N -0.222 5.222 7 C -0.018 4.018 8 H 0.076 0.924 9 C -0.195 4.195 10 C -0.169 4.169 11 C -0.126 4.126 12 C 0.031 3.969 13 H 0.041 0.959 14 C -0.532 4.532 15 H 0.109 0.891 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.706 3.294 19 H -0.206 1.206 20 H -0.218 1.218 21 H -0.206 1.206 22 C -0.063 4.063 23 C -0.067 4.067 24 H 0.039 0.961 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.126 0.874 41 H 0.040 0.960 42 H 0.079 0.921 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.712 0.490 -10.283 11.321 hybrid contribution -0.916 -0.011 0.794 1.212 sum -5.628 0.479 -9.489 11.043 Atomic orbital electron populations 1.22386 0.88309 1.01513 0.99786 1.61609 1.06469 1.15271 1.43235 1.21730 0.95882 0.88698 1.00171 1.21944 0.95380 0.98324 0.98113 1.21742 0.97410 0.96893 0.90648 1.61615 1.05357 1.35896 1.19358 1.22563 0.87320 0.92452 0.99443 0.92395 1.23106 0.99826 0.99128 0.97399 1.22577 0.98176 0.98011 0.98152 1.22265 0.99023 0.98328 0.93028 1.19288 0.97228 0.92671 0.87663 0.95894 1.21698 0.99095 1.41050 0.91386 0.89078 1.25011 0.95576 0.96149 0.97829 1.69992 1.29729 1.47535 1.06589 0.86899 0.85034 0.78794 0.78630 1.20560 1.21821 1.20638 1.21175 0.91129 0.92586 1.01455 1.21266 0.96389 0.97909 0.91147 0.96091 0.92061 0.91873 0.93194 0.93422 0.92293 0.93030 0.93419 0.94939 0.91536 0.93995 0.93707 0.93107 0.93065 0.92532 0.93579 0.87354 0.96049 0.92051 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.24 60.06 0.55 0.93 16 2 N -0.54 -8.61 4.52 -247.39 -1.12 -9.73 16 3 C 0.06 1.01 5.28 -4.59 -0.02 0.99 16 4 C -0.10 -1.49 6.42 -25.35 -0.16 -1.65 16 5 C 0.06 1.05 4.98 -4.58 -0.02 1.03 16 6 N -0.50 -9.63 2.88 -229.73 -0.66 -10.29 16 7 C 0.09 1.82 2.80 -66.60 -0.19 1.64 16 8 H 0.06 1.15 7.62 -51.93 -0.40 0.75 16 9 C -0.16 -2.82 5.84 -25.07 -0.15 -2.96 16 10 C -0.13 -2.47 6.91 -24.74 -0.17 -2.64 16 11 C -0.09 -2.01 4.88 -25.07 -0.12 -2.14 16 12 C 0.05 1.20 2.71 -90.65 -0.25 0.96 16 13 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 14 C -0.49 -12.69 6.22 -34.44 -0.21 -12.90 16 15 H 0.09 2.28 3.32 -52.49 -0.17 2.11 16 16 C 0.05 1.46 5.30 -17.82 -0.09 1.36 16 17 N -0.90 -25.54 12.04 55.43 0.67 -24.88 16 18 Si 0.88 21.23 29.54 -169.99 -5.02 16.21 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 C 0.06 1.21 2.57 -6.45 -0.02 1.19 16 23 C 0.06 1.07 5.03 -6.44 -0.03 1.04 16 24 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.06 0.71 7.98 -51.93 -0.41 0.29 16 26 H 0.06 0.77 8.06 -51.93 -0.42 0.35 16 27 H 0.05 0.91 7.17 -51.93 -0.37 0.54 16 28 H 0.05 0.66 7.49 -51.93 -0.39 0.27 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.77 7.28 -51.93 -0.38 0.39 16 32 H 0.03 0.55 7.16 -51.93 -0.37 0.18 16 33 H 0.07 1.21 5.43 -51.93 -0.28 0.93 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.05 1.25 7.48 -51.93 -0.39 0.86 16 38 H 0.06 1.40 7.81 -51.93 -0.41 0.99 16 39 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.11 2.34 5.03 -51.93 -0.26 2.08 16 41 H 0.02 0.40 6.24 -51.93 -0.32 0.07 16 42 H 0.06 1.02 7.80 -51.93 -0.41 0.62 16 43 H 0.05 1.08 5.91 -51.93 -0.31 0.78 16 LS Contribution 305.54 15.07 4.60 4.60 Total: -1.00 -27.01 305.54 -9.80 -36.81 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -7.38 Total: 0.43 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -0.88 Total: -13.16 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: -1.11 Total: -44.90 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.01 -9.80 -36.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261074221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.052 kcal (2) G-P(sol) polarization free energy of solvation -27.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds