Wall clock time and date at job start Mon Mar 30 2020 04:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.44178 * 111.00168 * 2 1 4 4 C 1.54320 * 112.61958 * 217.52976 * 3 2 1 5 5 C 1.54318 * 111.72472 * 318.91371 * 4 3 2 6 6 N 1.44184 * 112.61032 * 318.92406 * 5 4 3 7 7 C 1.46897 * 111.00095 * 217.52331 * 6 5 4 8 8 H 1.08998 * 110.01861 * 44.85171 * 7 6 5 9 9 C 1.54263 * 110.03214 * 283.46229 * 7 6 5 10 10 C 1.54892 * 104.19526 * 217.10798 * 9 7 6 11 11 C 1.54884 * 102.75183 * 37.94040 * 10 9 7 12 12 C 1.53873 * 110.03264 * 166.29519 * 7 6 5 13 13 H 1.09002 * 110.03479 * 238.57328 * 12 7 6 14 14 C 1.50707 * 110.03291 * 0.02562 * 12 7 6 15 15 H 1.07999 * 119.99553 * 354.47122 * 14 12 7 16 16 C 1.37872 * 120.00232 * 174.47652 * 14 12 7 17 17 N 1.31515 * 119.99943 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 120.00108 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46960 * 60.00435 * 18 16 14 20 20 H 1.48502 * 109.47077 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47281 * 300.00190 * 18 16 14 22 22 C 1.48082 * 109.89664 * 94.35081 * 6 5 4 23 23 C 1.46093 * 112.16042 * 279.63303 * 22 6 5 24 24 H 1.09000 * 109.47162 * 297.43480 * 1 2 3 25 25 H 1.09000 * 109.47258 * 57.44174 * 1 2 3 26 26 H 1.09002 * 109.46908 * 177.43639 * 1 2 3 27 27 H 1.09000 * 108.85471 * 96.71933 * 3 2 1 28 28 H 1.08999 * 108.85212 * 338.33494 * 3 2 1 29 29 H 1.09002 * 109.03092 * 198.33686 * 4 3 2 30 30 H 1.08999 * 108.97471 * 79.45204 * 4 3 2 31 31 H 1.08998 * 108.85698 * 198.11923 * 5 4 3 32 32 H 1.08996 * 108.85485 * 79.72773 * 5 4 3 33 33 H 1.08998 * 110.48877 * 335.78282 * 9 7 6 34 34 H 1.09000 * 110.48996 * 98.43035 * 9 7 6 35 35 H 1.08999 * 110.76147 * 156.26024 * 10 9 7 36 36 H 1.09004 * 110.75250 * 279.62804 * 10 9 7 37 37 H 1.09002 * 110.48788 * 80.73867 * 11 10 9 38 38 H 1.09005 * 110.49079 * 203.25081 * 11 10 9 39 39 H 0.97002 * 120.00186 * 180.02562 * 17 16 14 40 40 H 1.08996 * 108.94710 * 158.94435 * 22 6 5 41 41 H 1.09001 * 108.94745 * 40.32478 * 22 6 5 42 42 H 1.08997 * 108.94642 * 181.36745 * 23 22 6 43 43 H 1.08998 * 108.95068 * 299.99957 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9857 1.3460 0.0000 4 6 3.2530 1.4952 -0.8678 5 6 4.2081 0.2955 -0.6950 6 7 4.3130 -0.1365 0.6766 7 6 5.6864 -0.5491 0.9951 8 1 6.3957 0.1767 0.5975 9 6 5.9699 -1.9446 0.4018 10 6 6.8579 -2.6364 1.4658 11 6 6.2410 -2.1442 2.7985 12 6 5.8587 -0.6759 2.5189 13 1 6.6522 -0.0118 2.8615 14 6 4.5652 -0.3383 3.2146 15 1 3.7244 0.0268 2.6436 16 6 4.4553 -0.4956 4.5799 17 7 5.4795 -0.9397 5.2752 18 14 2.8522 -0.0764 5.4423 19 1 1.7602 -0.9209 4.8950 20 1 2.9925 -0.3305 6.8987 21 1 2.5297 1.3558 5.2190 22 6 3.3554 -1.2365 0.9331 23 6 1.9997 -0.7441 1.1652 24 1 -0.3633 0.4735 0.9121 25 1 -0.3634 0.5530 -0.8661 26 1 -0.3633 -1.0267 -0.0460 27 1 2.2246 1.6316 1.0244 28 1 1.2169 2.0184 -0.3808 29 1 3.7744 2.4087 -0.5814 30 1 2.9591 1.5675 -1.9149 31 1 5.1983 0.5793 -1.0515 32 1 3.8431 -0.5351 -1.2989 33 1 5.0402 -2.4965 0.2637 34 1 6.5059 -1.8558 -0.5431 35 1 6.7853 -3.7208 1.3838 36 1 7.8939 -2.3097 1.3758 37 1 5.3550 -2.7282 3.0474 38 1 6.9740 -2.2030 3.6030 39 1 5.4021 -1.0507 6.2358 40 1 3.6841 -1.7946 1.8098 41 1 3.3464 -1.9057 0.0728 42 1 1.3459 -1.5914 1.3716 43 1 2.0064 -0.0846 2.0331 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261074221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:21 Heat of formation + Delta-G solvation = 11.276103 kcal Electronic energy + Delta-G solvation = -20837.072030 eV Core-core repulsion = 18109.946695 eV Total energy + Delta-G solvation = -2727.125336 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.01289 -38.60425 -35.67665 -34.25748 -33.29667 -30.42467 -29.95172 -27.85039 -26.20997 -25.67362 -25.09481 -22.40031 -21.08815 -20.73518 -19.80628 -18.45317 -17.14990 -16.54751 -16.24846 -16.15474 -15.69710 -15.55965 -15.44489 -14.42898 -14.28649 -14.15616 -13.93952 -13.63110 -13.10552 -13.05871 -12.72871 -12.61506 -12.40432 -12.35243 -12.13096 -12.06772 -11.86250 -11.60226 -11.50371 -11.39703 -11.23406 -11.11195 -10.78990 -10.44882 -10.30719 -9.18312 -8.69766 -7.94055 -5.92406 1.40107 1.42204 1.47293 2.52179 3.10157 3.28795 3.37459 4.01730 4.10489 4.15569 4.20124 4.34819 4.41262 4.43349 4.49189 4.64387 4.66926 4.73657 4.78549 4.88032 4.92651 4.98911 5.02417 5.05898 5.09851 5.14853 5.18647 5.24217 5.25714 5.33811 5.36522 5.43848 5.53364 5.66439 5.87391 6.05615 6.11197 6.18035 6.34782 6.48946 6.66171 6.87803 7.22704 7.70937 9.16218 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016827 B = 0.011150 C = 0.007700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.572774 B = 2510.579378 C = 3635.626031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.540 5.540 3 C 0.064 3.936 4 C -0.096 4.096 5 C 0.063 3.937 6 N -0.516 5.516 7 C 0.096 3.904 8 H 0.062 0.938 9 C -0.143 4.143 10 C -0.121 4.121 11 C -0.079 4.079 12 C 0.042 3.958 13 H -0.015 1.015 14 C -0.485 4.485 15 H 0.098 0.902 16 C 0.003 3.997 17 N -0.932 5.932 18 Si 0.928 3.072 19 H -0.268 1.268 20 H -0.297 1.297 21 H -0.281 1.281 22 C 0.074 3.926 23 C 0.064 3.936 24 H 0.017 0.983 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.018 0.982 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.036 0.964 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.029 0.971 38 H 0.026 0.974 39 H 0.249 0.751 40 H 0.076 0.924 41 H 0.033 0.967 42 H 0.072 0.928 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.042 0.340 -13.048 14.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.264 5.264 3 C -0.065 4.065 4 C -0.135 4.135 5 C -0.066 4.066 6 N -0.239 5.239 7 C -0.013 4.013 8 H 0.080 0.920 9 C -0.182 4.182 10 C -0.159 4.159 11 C -0.117 4.117 12 C 0.023 3.977 13 H 0.003 0.997 14 C -0.524 4.524 15 H 0.116 0.884 16 C -0.193 4.193 17 N -0.574 5.574 18 Si 0.756 3.244 19 H -0.194 1.194 20 H -0.224 1.224 21 H -0.207 1.207 22 C -0.053 4.053 23 C -0.063 4.063 24 H 0.036 0.964 25 H 0.101 0.899 26 H 0.092 0.908 27 H 0.036 0.964 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.048 0.952 38 H 0.045 0.955 39 H 0.058 0.942 40 H 0.094 0.906 41 H 0.051 0.949 42 H 0.090 0.910 43 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -5.988 0.490 -13.003 14.324 hybrid contribution -0.534 0.030 1.605 1.691 sum -6.522 0.519 -11.398 13.142 Atomic orbital electron populations 1.22497 0.86403 1.02638 1.00590 1.61625 1.08202 1.15058 1.41556 1.21747 0.97014 0.89072 0.98642 1.21949 0.94655 0.97489 0.99382 1.21784 0.98426 0.97543 0.88820 1.61530 1.04696 1.36115 1.21509 1.22369 0.88302 0.94132 0.96492 0.91992 1.22987 0.99945 0.97230 0.98012 1.22496 0.98599 0.99281 0.95502 1.22009 0.97507 0.97635 0.94592 1.19290 0.95204 0.92463 0.90756 0.99735 1.22067 0.99862 1.39042 0.91388 0.88416 1.25649 0.97964 0.96867 0.98843 1.70139 1.31409 1.49554 1.06313 0.86072 0.82484 0.78486 0.77331 1.19362 1.22359 1.20725 1.20988 0.91523 0.92480 1.00358 1.21136 0.96314 0.97906 0.90950 0.96440 0.89881 0.90828 0.96384 0.91109 0.92321 0.90581 0.92614 0.94617 0.91447 0.91192 0.91747 0.91983 0.95235 0.95544 0.94208 0.90558 0.94911 0.90981 0.95958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 9.24 127.69 1.18 1.80 16 2 N -0.54 -15.81 4.52 -936.61 -4.23 -20.04 16 3 C 0.06 1.88 5.28 87.26 0.46 2.34 16 4 C -0.10 -2.61 6.42 31.49 0.20 -2.41 16 5 C 0.06 1.95 4.98 87.26 0.43 2.38 16 6 N -0.52 -19.26 2.88 -880.75 -2.54 -21.80 16 7 C 0.10 3.77 2.80 45.64 0.13 3.90 16 8 H 0.06 2.38 7.62 -2.39 -0.02 2.36 16 9 C -0.14 -4.83 5.84 31.67 0.18 -4.65 16 10 C -0.12 -4.37 6.91 31.88 0.22 -4.15 16 11 C -0.08 -3.71 4.88 31.67 0.15 -3.55 16 12 C 0.04 2.05 2.71 -10.81 -0.03 2.02 16 13 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 14 C -0.48 -25.59 6.22 25.60 0.16 -25.44 16 15 H 0.10 4.99 3.32 -2.91 -0.01 4.98 16 16 C 0.00 0.14 5.30 84.65 0.45 0.59 16 17 N -0.93 -55.24 12.04 21.45 0.26 -54.98 16 18 Si 0.93 44.70 29.54 68.60 2.03 46.73 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 21 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 22 C 0.07 2.72 2.57 83.95 0.22 2.94 16 23 C 0.06 2.24 5.03 83.95 0.42 2.66 16 24 H 0.02 0.41 8.14 -2.39 -0.02 0.39 16 25 H 0.08 1.58 7.98 -2.39 -0.02 1.56 16 26 H 0.07 1.56 8.06 -2.39 -0.02 1.54 16 27 H 0.02 0.64 7.17 -2.39 -0.02 0.62 16 28 H 0.07 1.73 7.49 -2.39 -0.02 1.71 16 29 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 1.62 7.28 -2.39 -0.02 1.61 16 32 H 0.04 1.09 7.16 -2.39 -0.02 1.07 16 33 H 0.07 2.29 5.43 -2.39 -0.01 2.27 16 34 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.03 1.47 7.48 -2.39 -0.02 1.46 16 38 H 0.03 1.35 7.81 -2.38 -0.02 1.34 16 39 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 40 H 0.08 3.31 5.03 -2.39 -0.01 3.30 16 41 H 0.03 1.14 6.24 -2.39 -0.01 1.12 16 42 H 0.07 2.30 7.80 -2.39 -0.02 2.29 16 43 H 0.02 0.91 5.91 -2.39 -0.01 0.90 16 Total: -1.00 -59.72 305.54 0.66 -59.06 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 0.97 Total: 12.61 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: 4.18 Total: -21.58 kcal Atomic # 7 Polarization: -90.31 SS G_CDS: -6.51 Total: -96.83 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -59.72 0.66 -59.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261074221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.335 kcal (2) G-P(sol) polarization free energy of solvation -59.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds