Wall clock time and date at job start Mon Mar 30 2020 04:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.48068 * 110.99908 * 2 1 4 4 C 1.50743 * 112.93421 * 84.35115 * 3 2 1 5 5 C 1.54518 * 108.94236 * 92.64851 * 4 3 2 6 6 N 1.40081 * 111.50971 * 283.98742 * 5 4 3 7 7 C 1.46897 * 110.99790 * 188.15165 * 6 5 4 8 8 H 1.09000 * 110.01289 * 196.46423 * 7 6 5 9 9 C 1.54268 * 110.07463 * 317.87506 * 7 6 5 10 10 C 1.54886 * 104.19452 * 142.91783 * 9 7 6 11 11 C 1.54891 * 102.74899 * 322.05966 * 10 9 7 12 12 C 1.53873 * 110.03295 * 75.06981 * 7 6 5 13 13 H 1.09008 * 110.02986 * 121.38662 * 12 7 6 14 14 C 1.50694 * 110.03406 * 0.02562 * 12 7 6 15 15 H 1.08000 * 120.00051 * 359.78940 * 14 12 7 16 16 C 1.37878 * 120.00289 * 179.79980 * 14 12 7 17 17 N 1.31525 * 119.99630 * 359.97438 * 16 14 12 18 18 Si 1.86794 * 120.00111 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47589 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47074 * 120.00135 * 18 16 14 21 21 H 1.48502 * 109.47124 * 239.99492 * 18 16 14 22 22 C 1.47686 * 114.57108 * 61.45306 * 6 5 4 23 23 C 1.47741 * 110.99742 * 127.60267 * 2 1 3 24 24 H 1.08998 * 109.46806 * 56.04896 * 1 2 3 25 25 H 1.08999 * 109.47080 * 176.03976 * 1 2 3 26 26 H 1.08992 * 109.47058 * 296.04192 * 1 2 3 27 27 H 1.09002 * 108.79195 * 323.46041 * 3 2 1 28 28 H 1.08998 * 108.69704 * 205.17718 * 3 2 1 29 29 H 1.09000 * 109.56156 * 332.80653 * 4 3 2 30 30 H 1.08999 * 109.64654 * 212.54240 * 4 3 2 31 31 H 1.09002 * 109.06821 * 163.46712 * 5 4 3 32 32 H 1.08998 * 109.06888 * 44.51666 * 5 4 3 33 33 H 1.08993 * 110.49148 * 261.59761 * 9 7 6 34 34 H 1.09007 * 110.48381 * 24.10921 * 9 7 6 35 35 H 1.08994 * 110.75442 * 80.37881 * 10 9 7 36 36 H 1.09006 * 110.75924 * 203.56322 * 10 9 7 37 37 H 1.09001 * 110.48806 * 279.25867 * 11 10 9 38 38 H 1.09002 * 110.48073 * 156.61904 * 11 10 9 39 39 H 0.96991 * 119.99740 * 180.02562 * 17 16 14 40 40 H 1.09006 * 109.73684 * 38.33347 * 22 6 5 41 41 H 1.08996 * 109.74087 * 159.03371 * 22 6 5 42 42 H 1.08999 * 108.99288 * 313.43721 * 23 2 1 43 43 H 1.08996 * 108.99345 * 72.26599 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9997 1.3823 0.0000 4 6 2.0826 1.9797 1.3815 5 6 3.4913 1.7150 1.9587 6 7 3.6319 0.3869 2.3814 7 6 4.8981 0.1947 3.1009 8 1 5.1324 -0.8678 3.1664 9 6 6.0368 0.9433 2.3780 10 6 6.9233 1.4863 3.5262 11 6 5.8822 1.8967 4.5970 12 6 4.7998 0.8008 4.5118 13 1 4.9866 0.0324 5.2622 14 6 3.4347 1.4041 4.7206 15 1 2.7014 1.3677 3.9286 16 6 3.1220 2.0028 5.9226 17 7 4.0151 2.0469 6.8872 18 14 1.4302 2.7512 6.1811 19 1 0.6165 2.5720 4.9519 20 1 0.7597 2.0770 7.3218 21 1 1.5695 4.2001 6.4751 22 6 3.4736 -0.6183 1.3110 23 6 1.9985 -0.8416 1.0928 24 1 -0.3633 0.5739 -0.8525 25 1 -0.3633 -1.0252 -0.0710 26 1 -0.3633 0.4511 0.9233 27 1 1.3515 2.0073 -0.6144 28 1 2.9972 1.3737 -0.4392 29 1 1.3324 1.5188 2.0241 30 1 1.9063 3.0540 1.3275 31 1 3.6589 2.3784 2.8072 32 1 4.2360 1.9253 1.1911 33 1 6.6048 0.2581 1.7489 34 1 5.6362 1.7635 1.7821 35 1 7.5825 0.7063 3.9071 36 1 7.5004 2.3493 3.1937 37 1 5.4569 2.8722 4.3615 38 1 6.3375 1.9070 5.5874 39 1 3.7950 2.4677 7.7329 40 1 3.9304 -0.2519 0.3915 41 1 3.9471 -1.5531 1.6108 42 1 1.4640 -0.6057 2.0130 43 1 1.8325 -1.8901 0.8453 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261074227.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:30 Heat of formation + Delta-G solvation = 30.026324 kcal Electronic energy + Delta-G solvation = -20691.342123 eV Core-core repulsion = 17965.029858 eV Total energy + Delta-G solvation = -2726.312265 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.80924 -37.26629 -34.11869 -32.35626 -31.80746 -29.09073 -28.02309 -26.52644 -25.10533 -24.13475 -23.53348 -21.07319 -19.48362 -19.28163 -18.29297 -16.74994 -15.79114 -15.40637 -14.94218 -14.57731 -14.25030 -13.95205 -13.82993 -12.99302 -12.95299 -12.52752 -12.30980 -12.03120 -11.94039 -11.68282 -11.46074 -11.21726 -10.90368 -10.77930 -10.62942 -10.50369 -10.36425 -10.27093 -9.96800 -9.89891 -9.66807 -9.45146 -9.02372 -8.43510 -8.22338 -7.96522 -7.16778 -5.85495 -3.80656 3.35914 3.44878 3.48103 4.16274 4.55233 4.69913 5.17817 5.23678 5.41782 5.50040 5.56317 5.65134 5.68518 5.69302 5.75756 5.80354 5.84046 5.91366 5.97295 6.05501 6.17527 6.21574 6.30319 6.34076 6.40608 6.52159 6.59450 6.70838 6.76348 6.81907 6.97610 7.01280 7.26537 7.30276 7.31451 7.41565 7.70265 7.99473 8.09932 8.18465 8.33944 8.72275 9.28192 9.80639 11.25821 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018080 B = 0.009784 C = 0.007147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.282718 B = 2861.240791 C = 3916.711150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.553 5.553 3 C 0.058 3.942 4 C -0.150 4.150 5 C 0.066 3.934 6 N -0.520 5.520 7 C 0.095 3.905 8 H 0.058 0.942 9 C -0.161 4.161 10 C -0.129 4.129 11 C -0.093 4.093 12 C 0.049 3.951 13 H 0.027 0.973 14 C -0.491 4.491 15 H 0.091 0.909 16 C 0.052 3.948 17 N -0.899 5.899 18 Si 0.881 3.119 19 H -0.274 1.274 20 H -0.289 1.289 21 H -0.290 1.290 22 C 0.057 3.943 23 C 0.061 3.939 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.025 0.975 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.009 0.991 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.044 0.956 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.253 0.747 40 H 0.038 0.962 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.463 -2.406 -11.735 12.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.278 5.278 3 C -0.070 4.070 4 C -0.190 4.190 5 C -0.062 4.062 6 N -0.242 5.242 7 C -0.013 4.013 8 H 0.076 0.924 9 C -0.200 4.200 10 C -0.167 4.167 11 C -0.131 4.131 12 C 0.031 3.969 13 H 0.045 0.955 14 C -0.529 4.529 15 H 0.108 0.892 16 C -0.147 4.147 17 N -0.539 5.539 18 Si 0.710 3.290 19 H -0.199 1.199 20 H -0.216 1.216 21 H -0.216 1.216 22 C -0.070 4.070 23 C -0.067 4.067 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.044 0.956 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.130 0.870 32 H 0.026 0.974 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.673 -2.634 -11.680 12.090 hybrid contribution -0.581 0.946 0.520 1.226 sum -2.253 -1.688 -11.160 11.510 Atomic orbital electron populations 1.22308 0.88128 1.01491 1.00128 1.62266 1.07017 1.12104 1.46446 1.21977 1.00344 0.87960 0.96679 1.22051 0.99575 1.00481 0.96869 1.21388 0.93248 0.91697 0.99911 1.59139 1.35513 1.03531 1.26002 1.22467 0.84680 0.97718 0.96438 0.92370 1.23125 0.98238 1.00379 0.98270 1.22534 0.97863 0.98914 0.97343 1.22311 0.94956 0.99867 0.95960 1.19308 0.95144 0.93569 0.88923 0.95489 1.21697 0.98449 1.33630 0.99144 0.89164 1.25050 0.96119 0.97050 0.96489 1.70009 1.33731 1.45572 1.04587 0.86710 0.85665 0.78689 0.77928 1.19898 1.21563 1.21632 1.21884 0.95244 0.96342 0.93577 1.21913 0.96023 0.96077 0.92685 0.92038 0.91934 0.95612 0.92236 0.91530 0.91009 0.91677 0.87033 0.97351 0.93964 0.90984 0.93071 0.93688 0.93141 0.92680 0.93679 0.94433 0.90999 0.92699 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.38 60.07 0.56 0.92 16 2 N -0.55 -7.98 4.99 -243.99 -1.22 -9.19 16 3 C 0.06 0.83 5.15 -4.31 -0.02 0.81 16 4 C -0.15 -2.48 5.50 -27.06 -0.15 -2.63 16 5 C 0.07 1.22 2.78 -6.55 -0.02 1.20 16 6 N -0.52 -9.76 2.56 -230.34 -0.59 -10.35 16 7 C 0.09 1.88 2.92 -66.60 -0.19 1.68 16 8 H 0.06 1.13 7.45 -51.93 -0.39 0.74 16 9 C -0.16 -2.88 6.12 -25.07 -0.15 -3.03 16 10 C -0.13 -2.39 6.91 -24.74 -0.17 -2.56 16 11 C -0.09 -2.11 5.44 -25.07 -0.14 -2.24 16 12 C 0.05 1.18 2.63 -90.66 -0.24 0.94 16 13 H 0.03 0.72 8.14 -51.92 -0.42 0.30 16 14 C -0.49 -12.71 6.32 -34.44 -0.22 -12.93 16 15 H 0.09 2.30 4.52 -52.49 -0.24 2.06 16 16 C 0.05 1.43 5.33 -17.82 -0.09 1.34 16 17 N -0.90 -25.81 12.45 55.43 0.69 -25.12 16 18 Si 0.88 21.45 29.54 -169.99 -5.02 16.43 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 22 C 0.06 0.92 5.32 -4.50 -0.02 0.89 16 23 C 0.06 0.93 5.09 -4.47 -0.02 0.90 16 24 H 0.06 0.68 7.96 -51.93 -0.41 0.27 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.03 0.35 7.73 -51.93 -0.40 -0.06 16 27 H 0.06 0.77 7.74 -51.93 -0.40 0.37 16 28 H 0.07 0.98 6.52 -51.93 -0.34 0.64 16 29 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.11 2.41 5.53 -51.93 -0.29 2.12 16 32 H 0.01 0.16 5.41 -51.93 -0.28 -0.12 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 1.29 4.99 -51.93 -0.26 1.03 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.05 1.22 7.85 -51.93 -0.41 0.81 16 38 H 0.05 1.36 7.98 -51.93 -0.41 0.94 16 39 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.04 0.60 6.77 -51.93 -0.35 0.25 16 41 H 0.07 1.10 7.43 -51.93 -0.39 0.71 16 42 H 0.05 0.97 7.08 -51.93 -0.37 0.60 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 306.62 15.07 4.62 4.62 Total: -1.00 -27.31 306.62 -9.77 -37.07 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -7.37 Total: 1.24 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -0.88 Total: -14.70 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: -1.12 Total: -44.66 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.31 -9.77 -37.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261074227.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.101 kcal (2) G-P(sol) polarization free energy of solvation -27.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds