Wall clock time and date at job start Mon Mar 30 2020 04:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.48068 * 110.99908 * 2 1 4 4 C 1.50743 * 112.93421 * 84.35115 * 3 2 1 5 5 C 1.54518 * 108.94236 * 92.64851 * 4 3 2 6 6 N 1.40081 * 111.50971 * 283.98742 * 5 4 3 7 7 C 1.46897 * 110.99790 * 188.15165 * 6 5 4 8 8 H 1.09000 * 110.01289 * 196.46423 * 7 6 5 9 9 C 1.54268 * 110.07463 * 317.87506 * 7 6 5 10 10 C 1.54886 * 104.19452 * 142.91783 * 9 7 6 11 11 C 1.54891 * 102.74899 * 322.05966 * 10 9 7 12 12 C 1.53873 * 110.03295 * 75.06981 * 7 6 5 13 13 H 1.09008 * 110.02986 * 121.38662 * 12 7 6 14 14 C 1.50694 * 110.03406 * 0.02562 * 12 7 6 15 15 H 1.08000 * 120.00051 * 359.78940 * 14 12 7 16 16 C 1.37878 * 120.00289 * 179.79980 * 14 12 7 17 17 N 1.31525 * 119.99630 * 359.97438 * 16 14 12 18 18 Si 1.86794 * 120.00111 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47589 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47074 * 120.00135 * 18 16 14 21 21 H 1.48502 * 109.47124 * 239.99492 * 18 16 14 22 22 C 1.47686 * 114.57108 * 61.45306 * 6 5 4 23 23 C 1.47741 * 110.99742 * 127.60267 * 2 1 3 24 24 H 1.08998 * 109.46806 * 56.04896 * 1 2 3 25 25 H 1.08999 * 109.47080 * 176.03976 * 1 2 3 26 26 H 1.08992 * 109.47058 * 296.04192 * 1 2 3 27 27 H 1.09002 * 108.79195 * 323.46041 * 3 2 1 28 28 H 1.08998 * 108.69704 * 205.17718 * 3 2 1 29 29 H 1.09000 * 109.56156 * 332.80653 * 4 3 2 30 30 H 1.08999 * 109.64654 * 212.54240 * 4 3 2 31 31 H 1.09002 * 109.06821 * 163.46712 * 5 4 3 32 32 H 1.08998 * 109.06888 * 44.51666 * 5 4 3 33 33 H 1.08993 * 110.49148 * 261.59761 * 9 7 6 34 34 H 1.09007 * 110.48381 * 24.10921 * 9 7 6 35 35 H 1.08994 * 110.75442 * 80.37881 * 10 9 7 36 36 H 1.09006 * 110.75924 * 203.56322 * 10 9 7 37 37 H 1.09001 * 110.48806 * 279.25867 * 11 10 9 38 38 H 1.09002 * 110.48073 * 156.61904 * 11 10 9 39 39 H 0.96991 * 119.99740 * 180.02562 * 17 16 14 40 40 H 1.09006 * 109.73684 * 38.33347 * 22 6 5 41 41 H 1.08996 * 109.74087 * 159.03371 * 22 6 5 42 42 H 1.08999 * 108.99288 * 313.43721 * 23 2 1 43 43 H 1.08996 * 108.99345 * 72.26599 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9997 1.3823 0.0000 4 6 2.0826 1.9797 1.3815 5 6 3.4913 1.7150 1.9587 6 7 3.6319 0.3869 2.3814 7 6 4.8981 0.1947 3.1009 8 1 5.1324 -0.8678 3.1664 9 6 6.0368 0.9433 2.3780 10 6 6.9233 1.4863 3.5262 11 6 5.8822 1.8967 4.5970 12 6 4.7998 0.8008 4.5118 13 1 4.9866 0.0324 5.2622 14 6 3.4347 1.4041 4.7206 15 1 2.7014 1.3677 3.9286 16 6 3.1220 2.0028 5.9226 17 7 4.0151 2.0469 6.8872 18 14 1.4302 2.7512 6.1811 19 1 0.6165 2.5720 4.9519 20 1 0.7597 2.0770 7.3218 21 1 1.5695 4.2001 6.4751 22 6 3.4736 -0.6183 1.3110 23 6 1.9985 -0.8416 1.0928 24 1 -0.3633 0.5739 -0.8525 25 1 -0.3633 -1.0252 -0.0710 26 1 -0.3633 0.4511 0.9233 27 1 1.3515 2.0073 -0.6144 28 1 2.9972 1.3737 -0.4392 29 1 1.3324 1.5188 2.0241 30 1 1.9063 3.0540 1.3275 31 1 3.6589 2.3784 2.8072 32 1 4.2360 1.9253 1.1911 33 1 6.6048 0.2581 1.7489 34 1 5.6362 1.7635 1.7821 35 1 7.5825 0.7063 3.9071 36 1 7.5004 2.3493 3.1937 37 1 5.4569 2.8722 4.3615 38 1 6.3375 1.9070 5.5874 39 1 3.7950 2.4677 7.7329 40 1 3.9304 -0.2519 0.3915 41 1 3.9471 -1.5531 1.6108 42 1 1.4640 -0.6057 2.0130 43 1 1.8325 -1.8901 0.8453 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261074227.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:30 Heat of formation + Delta-G solvation = 13.671116 kcal Electronic energy + Delta-G solvation = -20692.051338 eV Core-core repulsion = 17965.029858 eV Total energy + Delta-G solvation = -2727.021480 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.25696 -38.66089 -35.59702 -34.31404 -33.13995 -30.46404 -29.81249 -27.91497 -26.64897 -25.36984 -25.29337 -22.51181 -21.03188 -20.67769 -19.88104 -18.56464 -17.22468 -16.72294 -16.53564 -16.20098 -15.84687 -15.44066 -15.27072 -14.41292 -14.36654 -14.12793 -13.83400 -13.37601 -13.27097 -13.13379 -12.97174 -12.81254 -12.48898 -12.40651 -12.21706 -12.01105 -11.86339 -11.72488 -11.54641 -11.42683 -11.37471 -11.14048 -10.82483 -10.39479 -10.32240 -9.12726 -8.62830 -7.96810 -5.94937 1.37908 1.41814 1.51141 2.51493 3.04215 3.26152 3.35626 3.93969 4.02779 4.10431 4.16080 4.21682 4.33316 4.41759 4.52847 4.55397 4.63929 4.67750 4.73475 4.76726 4.89991 4.98027 5.00931 5.02622 5.04764 5.08123 5.11500 5.16307 5.22363 5.30924 5.38991 5.44774 5.54561 5.62370 5.82046 6.02490 6.08620 6.16072 6.19721 6.46269 6.79014 6.90480 7.20362 7.68629 9.14470 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018080 B = 0.009784 C = 0.007147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.282718 B = 2861.240791 C = 3916.711150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.553 5.553 3 C 0.063 3.937 4 C -0.143 4.143 5 C 0.073 3.927 6 N -0.538 5.538 7 C 0.100 3.900 8 H 0.064 0.936 9 C -0.149 4.149 10 C -0.118 4.118 11 C -0.085 4.085 12 C 0.041 3.959 13 H -0.013 1.013 14 C -0.480 4.480 15 H 0.095 0.905 16 C -0.002 4.002 17 N -0.934 5.934 18 Si 0.936 3.064 19 H -0.266 1.266 20 H -0.293 1.293 21 H -0.290 1.290 22 C 0.063 3.937 23 C 0.065 3.935 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.011 0.989 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.023 0.977 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.028 0.972 38 H 0.024 0.976 39 H 0.249 0.751 40 H 0.047 0.953 41 H 0.081 0.919 42 H 0.026 0.974 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.724 -2.850 -14.652 15.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.278 5.278 3 C -0.065 4.065 4 C -0.183 4.183 5 C -0.056 4.056 6 N -0.260 5.260 7 C -0.008 4.008 8 H 0.082 0.918 9 C -0.187 4.187 10 C -0.156 4.156 11 C -0.123 4.123 12 C 0.022 3.978 13 H 0.005 0.995 14 C -0.519 4.519 15 H 0.112 0.888 16 C -0.198 4.198 17 N -0.577 5.577 18 Si 0.764 3.236 19 H -0.190 1.190 20 H -0.220 1.220 21 H -0.217 1.217 22 C -0.064 4.064 23 C -0.062 4.062 24 H 0.098 0.902 25 H 0.093 0.907 26 H 0.030 0.970 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.040 0.960 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.047 0.953 38 H 0.043 0.957 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.099 0.901 42 H 0.045 0.955 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.950 -3.081 -14.622 15.069 hybrid contribution -0.513 1.053 1.426 1.846 sum -2.463 -2.029 -13.195 13.576 Atomic orbital electron populations 1.22380 0.86961 1.02548 1.00157 1.62333 1.08090 1.11861 1.45508 1.21942 1.01115 0.88214 0.95227 1.21993 0.97461 1.01064 0.97758 1.21210 0.94837 0.90796 0.98737 1.58998 1.35032 1.04365 1.27652 1.22267 0.86311 0.97921 0.94332 0.91753 1.23012 0.97223 1.00641 0.97873 1.22455 0.97066 1.00061 0.96040 1.22065 0.95848 0.98440 0.95961 1.19304 0.94649 0.92946 0.90921 0.99453 1.22045 0.99377 1.31838 0.98638 0.88775 1.25726 0.99008 0.98270 0.96773 1.70148 1.35344 1.47261 1.04922 0.85835 0.82329 0.77725 0.77707 1.19048 1.22021 1.21663 1.21897 0.95915 0.95740 0.92828 1.21855 0.95188 0.97325 0.91873 0.90218 0.90740 0.97047 0.90239 0.91231 0.93516 0.90807 0.90861 0.95964 0.91064 0.90795 0.91974 0.91670 0.95268 0.95716 0.94186 0.93471 0.90086 0.95516 0.89780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 9.38 127.69 1.20 1.82 16 2 N -0.55 -14.32 4.99 -925.83 -4.62 -18.94 16 3 C 0.06 1.61 5.15 85.35 0.44 2.05 16 4 C -0.14 -4.51 5.50 30.38 0.17 -4.35 16 5 C 0.07 2.60 2.78 88.05 0.25 2.85 16 6 N -0.54 -19.55 2.56 -882.66 -2.26 -21.82 16 7 C 0.10 3.85 2.92 45.64 0.13 3.99 16 8 H 0.06 2.39 7.45 -2.39 -0.02 2.38 16 9 C -0.15 -4.91 6.12 31.67 0.19 -4.72 16 10 C -0.12 -4.22 6.91 31.88 0.22 -4.00 16 11 C -0.08 -3.96 5.44 31.67 0.17 -3.78 16 12 C 0.04 2.00 2.63 -10.82 -0.03 1.97 16 13 H -0.01 -0.72 8.14 -2.38 -0.02 -0.74 16 14 C -0.48 -25.54 6.32 25.60 0.16 -25.37 16 15 H 0.09 4.88 4.52 -2.91 -0.01 4.86 16 16 C 0.00 -0.13 5.33 84.65 0.45 0.32 16 17 N -0.93 -55.92 12.45 21.45 0.27 -55.66 16 18 Si 0.94 45.25 29.54 68.60 2.03 47.28 16 19 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 21 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 22 C 0.06 1.86 5.32 85.43 0.45 2.32 16 23 C 0.07 1.85 5.09 85.42 0.44 2.29 16 24 H 0.08 1.50 7.96 -2.39 -0.02 1.48 16 25 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.01 0.28 7.73 -2.39 -0.02 0.26 16 27 H 0.08 1.76 7.74 -2.39 -0.02 1.74 16 28 H 0.07 1.78 6.52 -2.39 -0.02 1.77 16 29 H 0.05 1.71 6.62 -2.39 -0.02 1.69 16 30 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.07 3.17 5.53 -2.39 -0.01 3.16 16 32 H 0.02 0.74 5.41 -2.39 -0.01 0.73 16 33 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.07 2.44 4.99 -2.38 -0.01 2.42 16 35 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 37 H 0.03 1.44 7.85 -2.39 -0.02 1.43 16 38 H 0.02 1.26 7.98 -2.39 -0.02 1.24 16 39 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 40 H 0.05 1.33 6.77 -2.38 -0.02 1.31 16 41 H 0.08 2.24 7.43 -2.39 -0.02 2.22 16 42 H 0.03 0.91 7.08 -2.39 -0.02 0.90 16 43 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -60.53 306.62 0.63 -59.90 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.97 Total: 13.83 kcal Atomic # 6 Polarization: -28.85 SS G_CDS: 4.24 Total: -24.61 kcal Atomic # 7 Polarization: -89.79 SS G_CDS: -6.61 Total: -96.41 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -60.53 0.63 -59.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261074227.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.576 kcal (2) G-P(sol) polarization free energy of solvation -60.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds