Wall clock time and date at job start Mon Mar 30 2020 03:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48646 * 111.00562 * 2 1 4 4 C 1.54635 * 104.63353 * 201.47459 * 3 2 1 5 5 C 1.53285 * 104.68332 * 23.69570 * 4 3 2 6 6 C 1.53620 * 111.01626 * 239.07476 * 5 4 3 7 7 C 1.55161 * 102.83696 * 260.27802 * 6 5 4 8 8 N 1.48622 * 103.35700 * 323.31670 * 7 6 5 9 9 C 1.46895 * 111.00179 * 159.15923 * 8 7 6 10 10 C 1.53001 * 109.47706 * 184.26068 * 9 8 7 11 11 C 1.53001 * 109.47711 * 185.12607 * 10 9 8 12 12 C 1.50696 * 109.47262 * 179.97438 * 11 10 9 13 13 H 1.08004 * 120.00277 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00202 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99831 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00378 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.46862 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47022 * 120.00161 * 16 14 12 19 19 H 1.48487 * 109.47282 * 240.00207 * 16 14 12 20 20 C 1.48189 * 105.85952 * 38.62380 * 8 7 6 21 21 C 1.48801 * 111.00139 * 244.38001 * 2 1 3 22 22 H 1.09001 * 109.46607 * 59.87417 * 1 2 3 23 23 H 1.08997 * 109.47307 * 179.87252 * 1 2 3 24 24 H 1.09004 * 109.46961 * 299.87832 * 1 2 3 25 25 H 1.09004 * 110.40506 * 82.68128 * 3 2 1 26 26 H 1.09003 * 110.39842 * 320.26046 * 3 2 1 27 27 H 1.09002 * 110.38821 * 264.89532 * 4 3 2 28 28 H 1.08996 * 110.48970 * 142.54527 * 4 3 2 29 29 H 1.09002 * 110.77039 * 141.89335 * 6 5 4 30 30 H 1.09004 * 110.77514 * 18.66803 * 6 5 4 31 31 H 1.09005 * 110.63587 * 81.78145 * 7 6 5 32 32 H 1.08996 * 110.64424 * 204.68234 * 7 6 5 33 33 H 1.08998 * 109.47316 * 304.25944 * 9 8 7 34 34 H 1.09006 * 109.47357 * 64.25908 * 9 8 7 35 35 H 1.09005 * 109.46791 * 305.12588 * 10 9 8 36 36 H 1.09001 * 109.47157 * 65.12261 * 10 9 8 37 37 H 1.09005 * 109.46978 * 299.99867 * 11 10 9 38 38 H 1.09001 * 109.47093 * 59.99615 * 11 10 9 39 39 H 0.96997 * 120.00448 * 179.97438 * 15 14 12 40 40 H 1.09006 * 110.01551 * 94.16664 * 20 8 7 41 41 H 1.08995 * 110.01774 * 215.56472 * 20 8 7 42 42 H 1.09002 * 110.44826 * 39.49918 * 21 2 1 43 43 H 1.08996 * 110.45699 * 276.93563 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0019 1.3877 0.0000 4 6 3.4417 1.2533 -0.5477 5 6 3.4269 -0.0431 -1.3655 6 6 4.4548 -1.0480 -0.8237 7 6 5.6510 -0.8760 -1.7968 8 7 4.9948 -0.6433 -3.1099 9 6 5.9124 0.0179 -4.0472 10 6 5.1716 0.3358 -5.3476 11 6 6.1567 0.9074 -6.3693 12 6 5.4270 1.2199 -7.6502 13 1 4.3667 1.0295 -7.7281 14 6 6.1129 1.7490 -8.7229 15 7 7.4039 1.9813 -8.6280 16 14 5.2087 2.1357 -10.3110 17 1 3.7733 1.7858 -10.1611 18 1 5.3357 3.5841 -10.6128 19 1 5.7980 1.3452 -11.4213 20 6 3.8170 0.2107 -2.8282 21 6 2.0023 -0.6007 -1.2526 22 1 -0.3632 0.5158 -0.8889 23 1 -0.3634 -1.0276 -0.0023 24 1 -0.3633 0.5120 0.8911 25 1 2.0166 1.7891 1.0133 26 1 1.4046 2.0240 -0.6532 27 1 4.1547 1.1765 0.2732 28 1 3.6880 2.1020 -1.1857 29 1 4.0629 -2.0641 -0.8688 30 1 4.7455 -0.7923 0.1953 31 1 6.2571 -0.0158 -1.5123 32 1 6.2584 -1.7807 -1.8229 33 1 6.2808 0.9428 -3.6035 34 1 6.7528 -0.6429 -4.2601 35 1 4.7255 -0.5764 -5.7439 36 1 4.3880 1.0672 -5.1498 37 1 6.6027 1.8196 -5.9729 38 1 6.9403 0.1760 -6.5670 39 1 7.8866 2.3531 -9.3827 40 1 4.0754 1.2605 -2.9678 41 1 2.9924 -0.0619 -3.4869 42 1 1.4030 -0.2908 -2.1087 43 1 2.0237 -1.6876 -1.1748 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309338911.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:58 Heat of formation + Delta-G solvation = -3.352393 kcal Electronic energy + Delta-G solvation = -19004.755162 eV Core-core repulsion = 16276.995488 eV Total energy + Delta-G solvation = -2727.759675 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.29234 -37.42336 -34.32818 -32.73853 -31.24911 -29.64949 -29.03975 -26.85582 -25.86535 -23.91624 -22.54491 -21.45133 -20.99801 -20.03791 -18.95199 -16.35608 -15.89953 -15.69019 -15.59011 -14.83373 -14.46453 -14.35490 -14.16723 -13.45610 -13.28819 -13.00552 -12.59539 -12.43502 -12.19891 -11.96101 -11.65663 -11.61342 -11.50145 -11.35960 -11.11813 -10.81303 -10.72349 -10.58161 -10.48697 -10.46690 -10.37103 -9.65592 -9.30871 -9.01886 -8.70120 -8.32928 -8.10230 -5.98033 -3.99952 3.32069 3.39373 3.43883 3.82441 4.22548 4.37057 4.47117 4.52774 4.58068 4.97060 5.03141 5.10756 5.21035 5.23976 5.37792 5.38302 5.47545 5.56330 5.62960 5.64501 5.74314 5.76456 5.77607 5.84878 5.88624 5.93182 5.96767 6.12053 6.17617 6.20618 6.33889 6.61589 6.69602 6.79060 6.82182 7.08590 7.25320 7.42307 7.70724 7.85916 8.02637 8.46117 9.07443 9.63954 11.13508 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.029754 B = 0.004003 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.816210 B = 6993.745097 C = 7552.597227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.518 5.518 3 C 0.032 3.968 4 C -0.115 4.115 5 C -0.075 4.075 6 C -0.102 4.102 7 C 0.031 3.969 8 N -0.517 5.517 9 C 0.047 3.953 10 C -0.106 4.106 11 C 0.022 3.978 12 C -0.517 4.517 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.051 3.949 21 C 0.048 3.952 22 H 0.028 0.972 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.028 0.972 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.044 0.956 37 H 0.013 0.987 38 H 0.016 0.984 39 H 0.259 0.741 40 H 0.049 0.951 41 H 0.078 0.922 42 H 0.048 0.952 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.659 -3.575 18.856 21.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.242 5.242 3 C -0.096 4.096 4 C -0.153 4.153 5 C -0.076 4.076 6 C -0.140 4.140 7 C -0.097 4.097 8 N -0.241 5.241 9 C -0.080 4.080 10 C -0.144 4.144 11 C -0.016 4.016 12 C -0.556 4.556 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.078 4.078 21 C -0.079 4.079 22 H 0.047 0.953 23 H 0.087 0.913 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.046 0.954 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.031 0.969 38 H 0.035 0.965 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.066 0.934 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.515 -4.299 18.982 21.664 hybrid contribution -0.437 1.565 -1.367 2.123 sum -9.952 -2.734 17.615 20.415 Atomic orbital electron populations 1.22506 0.88224 1.02153 1.00722 1.65429 1.07964 1.15257 1.35516 1.23187 0.95404 0.90132 1.00914 1.22471 0.96487 0.96881 0.99435 1.21561 0.95234 0.95474 0.95364 1.22498 0.94440 0.99040 0.98020 1.23302 0.96290 1.00705 0.89381 1.64938 1.07026 1.43188 1.08904 1.22458 0.95444 0.96287 0.93827 1.21663 0.99062 1.00138 0.93549 1.19075 0.94126 0.95788 0.92600 1.21291 0.95128 1.41426 0.97716 0.92683 1.25031 0.94861 0.95814 0.98835 1.69977 1.07446 1.44948 1.31243 0.86546 0.79997 0.77912 0.83629 1.19750 1.21066 1.20989 1.23008 0.94912 0.96195 0.93648 1.23178 0.93886 1.00241 0.90642 0.95311 0.91269 0.91466 0.90290 0.93771 0.90769 0.90975 0.90737 0.91092 0.94081 0.90314 0.95379 0.90982 0.92560 0.93719 0.96868 0.96543 0.93104 0.93230 0.90392 0.93380 0.89708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.52 60.07 0.57 0.68 16 2 N -0.52 -5.37 5.66 -238.41 -1.35 -6.72 16 3 C 0.03 0.31 6.53 -2.00 -0.01 0.29 16 4 C -0.11 -1.20 6.33 -25.72 -0.16 -1.36 16 5 C -0.08 -0.86 0.90 -153.57 -0.14 -1.00 16 6 C -0.10 -1.13 6.16 -25.27 -0.16 -1.29 16 7 C 0.03 0.40 6.58 -1.73 -0.01 0.39 16 8 N -0.52 -8.03 5.37 -230.30 -1.24 -9.27 16 9 C 0.05 0.85 4.82 -3.83 -0.02 0.84 16 10 C -0.11 -2.27 4.91 -26.73 -0.13 -2.40 16 11 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 12 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 13 H 0.05 1.56 7.74 -52.48 -0.41 1.15 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 16 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 C 0.05 0.72 4.85 -2.85 -0.01 0.70 16 21 C 0.05 0.53 5.59 -2.56 -0.01 0.51 16 22 H 0.03 0.25 7.98 -51.93 -0.41 -0.17 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.43 7.96 -51.93 -0.41 0.01 16 27 H 0.07 0.73 7.28 -51.93 -0.38 0.35 16 28 H 0.07 0.78 7.19 -51.93 -0.37 0.40 16 29 H 0.07 0.82 7.45 -51.93 -0.39 0.44 16 30 H 0.07 0.72 7.37 -51.93 -0.38 0.33 16 31 H 0.04 0.53 7.93 -51.93 -0.41 0.11 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.03 0.50 8.00 -51.93 -0.42 0.09 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.04 0.94 7.13 -51.93 -0.37 0.57 16 37 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.05 0.74 6.49 -51.93 -0.34 0.41 16 41 H 0.08 1.15 7.40 -51.93 -0.38 0.76 16 42 H 0.05 0.54 7.31 -51.93 -0.38 0.16 16 43 H 0.08 0.92 7.42 -51.93 -0.39 0.53 16 LS Contribution 329.00 15.07 4.96 4.96 Total: -1.00 -30.41 329.00 -10.50 -40.91 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -7.96 Total: -4.26 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -0.64 Total: -15.95 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: -1.85 Total: -42.59 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.41 -10.50 -40.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309338911.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.562 kcal (2) G-P(sol) polarization free energy of solvation -30.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds