Wall clock time and date at job start Mon Mar 30 2020 03:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48646 * 111.00562 * 2 1 4 4 C 1.54635 * 104.63353 * 201.47459 * 3 2 1 5 5 C 1.53285 * 104.68332 * 23.69570 * 4 3 2 6 6 C 1.53620 * 111.01626 * 239.07476 * 5 4 3 7 7 C 1.55161 * 102.83696 * 260.27802 * 6 5 4 8 8 N 1.48622 * 103.35700 * 323.31670 * 7 6 5 9 9 C 1.46895 * 111.00179 * 159.15923 * 8 7 6 10 10 C 1.53001 * 109.47706 * 184.26068 * 9 8 7 11 11 C 1.53001 * 109.47711 * 185.12607 * 10 9 8 12 12 C 1.50696 * 109.47262 * 179.97438 * 11 10 9 13 13 H 1.08004 * 120.00277 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00202 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99831 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00378 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.46862 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47022 * 120.00161 * 16 14 12 19 19 H 1.48487 * 109.47282 * 240.00207 * 16 14 12 20 20 C 1.48189 * 105.85952 * 38.62380 * 8 7 6 21 21 C 1.48801 * 111.00139 * 244.38001 * 2 1 3 22 22 H 1.09001 * 109.46607 * 59.87417 * 1 2 3 23 23 H 1.08997 * 109.47307 * 179.87252 * 1 2 3 24 24 H 1.09004 * 109.46961 * 299.87832 * 1 2 3 25 25 H 1.09004 * 110.40506 * 82.68128 * 3 2 1 26 26 H 1.09003 * 110.39842 * 320.26046 * 3 2 1 27 27 H 1.09002 * 110.38821 * 264.89532 * 4 3 2 28 28 H 1.08996 * 110.48970 * 142.54527 * 4 3 2 29 29 H 1.09002 * 110.77039 * 141.89335 * 6 5 4 30 30 H 1.09004 * 110.77514 * 18.66803 * 6 5 4 31 31 H 1.09005 * 110.63587 * 81.78145 * 7 6 5 32 32 H 1.08996 * 110.64424 * 204.68234 * 7 6 5 33 33 H 1.08998 * 109.47316 * 304.25944 * 9 8 7 34 34 H 1.09006 * 109.47357 * 64.25908 * 9 8 7 35 35 H 1.09005 * 109.46791 * 305.12588 * 10 9 8 36 36 H 1.09001 * 109.47157 * 65.12261 * 10 9 8 37 37 H 1.09005 * 109.46978 * 299.99867 * 11 10 9 38 38 H 1.09001 * 109.47093 * 59.99615 * 11 10 9 39 39 H 0.96997 * 120.00448 * 179.97438 * 15 14 12 40 40 H 1.09006 * 110.01551 * 94.16664 * 20 8 7 41 41 H 1.08995 * 110.01774 * 215.56472 * 20 8 7 42 42 H 1.09002 * 110.44826 * 39.49918 * 21 2 1 43 43 H 1.08996 * 110.45699 * 276.93563 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0019 1.3877 0.0000 4 6 3.4417 1.2533 -0.5477 5 6 3.4269 -0.0431 -1.3655 6 6 4.4548 -1.0480 -0.8237 7 6 5.6510 -0.8760 -1.7968 8 7 4.9948 -0.6433 -3.1099 9 6 5.9124 0.0179 -4.0472 10 6 5.1716 0.3358 -5.3476 11 6 6.1567 0.9074 -6.3693 12 6 5.4270 1.2199 -7.6502 13 1 4.3667 1.0295 -7.7281 14 6 6.1129 1.7490 -8.7229 15 7 7.4039 1.9813 -8.6280 16 14 5.2087 2.1357 -10.3110 17 1 3.7733 1.7858 -10.1611 18 1 5.3357 3.5841 -10.6128 19 1 5.7980 1.3452 -11.4213 20 6 3.8170 0.2107 -2.8282 21 6 2.0023 -0.6007 -1.2526 22 1 -0.3632 0.5158 -0.8889 23 1 -0.3634 -1.0276 -0.0023 24 1 -0.3633 0.5120 0.8911 25 1 2.0166 1.7891 1.0133 26 1 1.4046 2.0240 -0.6532 27 1 4.1547 1.1765 0.2732 28 1 3.6880 2.1020 -1.1857 29 1 4.0629 -2.0641 -0.8688 30 1 4.7455 -0.7923 0.1953 31 1 6.2571 -0.0158 -1.5123 32 1 6.2584 -1.7807 -1.8229 33 1 6.2808 0.9428 -3.6035 34 1 6.7528 -0.6429 -4.2601 35 1 4.7255 -0.5764 -5.7439 36 1 4.3880 1.0672 -5.1498 37 1 6.6027 1.8196 -5.9729 38 1 6.9403 0.1760 -6.5670 39 1 7.8866 2.3531 -9.3827 40 1 4.0754 1.2605 -2.9678 41 1 2.9924 -0.0619 -3.4869 42 1 1.4030 -0.2908 -2.1087 43 1 2.0237 -1.6876 -1.1748 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309338911.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:57 Heat of formation + Delta-G solvation = -23.755809 kcal Electronic energy + Delta-G solvation = -19005.639921 eV Core-core repulsion = 16276.995488 eV Total energy + Delta-G solvation = -2728.644433 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.25518 -38.49588 -36.06494 -34.39282 -32.64802 -30.85031 -30.04397 -28.23739 -27.16711 -25.19744 -23.97263 -22.35321 -22.23385 -21.57969 -20.01754 -18.50608 -16.97208 -16.81406 -16.50693 -16.45705 -15.83183 -15.55720 -15.29996 -14.70173 -14.39784 -14.28576 -13.86556 -13.78469 -13.46167 -13.23722 -13.15154 -12.84772 -12.64987 -12.47638 -12.33845 -12.31679 -12.18458 -12.13806 -11.67653 -11.55267 -11.45605 -11.37780 -11.33046 -11.07908 -10.57558 -9.48915 -9.34707 -8.21889 -6.33124 1.38608 1.39104 1.52667 2.39582 3.00386 3.08564 3.11123 3.48282 3.59980 3.65069 4.01581 4.18308 4.22523 4.26139 4.34846 4.39687 4.47053 4.52380 4.65153 4.67238 4.70424 4.74281 4.78928 4.86832 4.91212 4.92617 4.99682 5.02652 5.07277 5.12444 5.14710 5.20367 5.22944 5.29868 5.49396 5.70598 5.81735 5.83153 5.98900 6.03999 6.07762 6.25626 6.83441 7.36177 8.90358 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.029754 B = 0.004003 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.816210 B = 6993.745097 C = 7552.597227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.524 5.524 3 C 0.033 3.967 4 C -0.114 4.114 5 C -0.071 4.071 6 C -0.093 4.093 7 C 0.030 3.970 8 N -0.526 5.526 9 C 0.060 3.940 10 C -0.090 4.090 11 C 0.026 3.974 12 C -0.543 4.543 13 H 0.057 0.943 14 C -0.001 4.001 15 N -0.933 5.933 16 Si 0.966 3.034 17 H -0.263 1.263 18 H -0.276 1.276 19 H -0.276 1.276 20 C 0.050 3.950 21 C 0.051 3.949 22 H 0.026 0.974 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.092 0.908 26 H 0.042 0.958 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.026 0.974 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.046 0.954 37 H -0.010 1.010 38 H -0.008 1.008 39 H 0.264 0.736 40 H 0.038 0.962 41 H 0.068 0.932 42 H 0.041 0.959 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.959 -3.743 19.738 22.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.248 5.248 3 C -0.095 4.095 4 C -0.152 4.152 5 C -0.072 4.072 6 C -0.131 4.131 7 C -0.098 4.098 8 N -0.250 5.250 9 C -0.068 4.068 10 C -0.127 4.127 11 C -0.011 4.011 12 C -0.581 4.581 13 H 0.076 0.924 14 C -0.198 4.198 15 N -0.574 5.574 16 Si 0.790 3.210 17 H -0.187 1.187 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.078 4.078 21 C -0.077 4.077 22 H 0.045 0.955 23 H 0.093 0.907 24 H 0.097 0.903 25 H 0.111 0.889 26 H 0.060 0.940 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.009 0.991 38 H 0.011 0.989 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.087 0.913 42 H 0.059 0.941 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.826 -4.473 19.883 23.077 hybrid contribution -0.015 1.613 -1.619 2.285 sum -10.841 -2.861 18.265 21.432 Atomic orbital electron populations 1.22559 0.87165 1.02743 1.01207 1.65449 1.09050 1.15497 1.34821 1.23208 0.94723 0.89932 1.01600 1.22462 0.97364 0.95930 0.99413 1.21509 0.95792 0.96361 0.93573 1.22472 0.93247 0.99095 0.98267 1.23393 0.97075 1.01100 0.88221 1.64886 1.07084 1.42895 1.10128 1.22174 0.95303 0.96375 0.92971 1.21397 0.97955 0.99430 0.93963 1.18968 0.94388 0.94276 0.93501 1.21702 0.95518 1.41879 0.98996 0.92427 1.25994 0.95717 0.95360 1.02776 1.70101 1.09129 1.45506 1.32631 0.85381 0.78965 0.77959 0.78649 1.18695 1.20208 1.20196 1.23011 0.94034 0.95218 0.95542 1.23119 0.93369 1.00361 0.90892 0.95527 0.90685 0.90260 0.88947 0.93964 0.89791 0.91668 0.90389 0.89397 0.93891 0.89563 0.95550 0.91406 0.93083 0.93544 0.99136 0.98922 0.92707 0.94379 0.91335 0.94083 0.89516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.52 127.69 1.22 1.40 16 2 N -0.52 -9.78 5.66 -908.18 -5.14 -14.92 16 3 C 0.03 0.58 6.53 86.52 0.56 1.14 16 4 C -0.11 -2.18 6.33 31.25 0.20 -1.98 16 5 C -0.07 -1.53 0.90 -51.58 -0.05 -1.58 16 6 C -0.09 -1.86 6.16 31.54 0.19 -1.67 16 7 C 0.03 0.72 6.58 86.71 0.57 1.29 16 8 N -0.53 -16.07 5.37 -882.52 -4.74 -20.81 16 9 C 0.06 2.18 4.82 86.30 0.42 2.60 16 10 C -0.09 -3.90 4.91 30.59 0.15 -3.75 16 11 C 0.03 1.44 4.97 29.85 0.15 1.59 16 12 C -0.54 -31.87 9.11 25.60 0.23 -31.64 16 13 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 14 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 15 N -0.93 -57.74 13.29 21.45 0.28 -57.46 16 16 Si 0.97 45.02 29.54 68.60 2.03 47.04 16 17 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 20 C 0.05 1.40 4.85 86.22 0.42 1.82 16 21 C 0.05 1.03 5.59 86.07 0.48 1.51 16 22 H 0.03 0.41 7.98 -2.39 -0.02 0.39 16 23 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.09 1.37 8.14 -2.38 -0.02 1.36 16 26 H 0.04 0.75 7.96 -2.39 -0.02 0.73 16 27 H 0.08 1.45 7.28 -2.39 -0.02 1.43 16 28 H 0.06 1.34 7.19 -2.39 -0.02 1.32 16 29 H 0.08 1.54 7.45 -2.39 -0.02 1.52 16 30 H 0.09 1.51 7.37 -2.39 -0.02 1.49 16 31 H 0.04 1.04 7.93 -2.38 -0.02 1.02 16 32 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.03 0.96 8.00 -2.39 -0.02 0.94 16 34 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 35 H 0.05 2.25 8.14 -2.38 -0.02 2.24 16 36 H 0.05 1.98 7.13 -2.39 -0.02 1.96 16 37 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 38 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 39 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 40 H 0.04 1.14 6.49 -2.38 -0.02 1.13 16 41 H 0.07 2.02 7.40 -2.39 -0.02 2.00 16 42 H 0.04 0.89 7.31 -2.39 -0.02 0.87 16 43 H 0.09 1.73 7.42 -2.39 -0.02 1.71 16 Total: -1.00 -64.74 329.00 -1.62 -66.36 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 0.94 Total: 8.65 kcal Atomic # 6 Polarization: -33.87 SS G_CDS: 5.01 Total: -28.87 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -9.59 Total: -93.19 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -64.74 -1.62 -66.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309338911.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.604 kcal (2) G-P(sol) polarization free energy of solvation -64.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds