Wall clock time and date at job start Mon Mar 30 2020 04:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46298 * 111.00384 * 2 1 4 4 C 1.53894 * 112.05260 * 181.00492 * 3 2 1 5 5 C 1.51643 * 106.74527 * 303.64943 * 4 3 2 6 6 H 1.08998 * 110.52770 * 301.85143 * 5 4 3 7 7 C 1.52961 * 117.07670 * 174.04883 * 5 4 3 8 8 N 1.49142 * 103.32615 * 204.19540 * 7 5 4 9 9 C 1.46899 * 111.00204 * 146.50997 * 8 7 5 10 10 C 1.52997 * 109.47254 * 169.99700 * 9 8 7 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47592 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00057 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00356 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99989 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00117 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46744 * 90.00434 * 16 14 12 18 18 H 1.48500 * 109.47304 * 210.00023 * 16 14 12 19 19 H 1.48498 * 109.47341 * 330.00626 * 16 14 12 20 20 C 1.48728 * 108.27223 * 24.43398 * 8 7 5 21 21 C 1.52183 * 105.73326 * 3.49718 * 20 8 7 22 22 H 1.09002 * 109.96027 * 87.08217 * 21 20 8 23 23 C 1.47793 * 111.00389 * 127.66011 * 2 1 3 24 24 H 1.08999 * 109.46974 * 56.04835 * 1 2 3 25 25 H 1.09003 * 109.47008 * 176.04368 * 1 2 3 26 26 H 1.08997 * 109.46852 * 296.04385 * 1 2 3 27 27 H 1.09003 * 108.96194 * 60.34209 * 3 2 1 28 28 H 1.09004 * 108.89292 * 301.62253 * 3 2 1 29 29 H 1.08996 * 109.99571 * 184.33775 * 4 3 2 30 30 H 1.09003 * 110.07112 * 63.00010 * 4 3 2 31 31 H 1.08998 * 110.65351 * 85.72661 * 7 5 4 32 32 H 1.09009 * 110.78631 * 322.72146 * 7 5 4 33 33 H 1.09002 * 109.47043 * 289.99771 * 9 8 7 34 34 H 1.09001 * 109.47354 * 49.99832 * 9 8 7 35 35 H 1.09002 * 109.47153 * 300.00004 * 10 9 8 36 36 H 1.08998 * 109.47533 * 59.99633 * 10 9 8 37 37 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 38 38 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 39 39 H 0.96996 * 119.99885 * 179.97438 * 15 14 12 40 40 H 1.09001 * 110.20055 * 122.56093 * 20 8 7 41 41 H 1.08998 * 110.19934 * 244.43199 * 20 8 7 42 42 H 1.09006 * 109.96782 * 294.85953 * 23 2 1 43 43 H 1.09001 * 109.97623 * 56.17807 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9933 1.3658 0.0000 4 6 3.5318 1.3940 -0.0250 5 6 4.0031 0.5900 1.1712 6 1 3.6046 1.0096 2.0948 7 6 5.5078 0.3458 1.2969 8 7 5.5873 -0.8907 2.1270 9 6 6.7411 -1.7126 1.7382 10 6 6.9369 -2.8332 2.7613 11 6 8.1382 -3.6896 2.3560 12 6 8.3314 -4.7931 3.3640 13 1 7.6639 -4.8756 4.2090 14 6 9.3598 -5.6980 3.2070 15 7 10.1724 -5.5979 2.1778 16 14 9.5997 -7.0653 4.4569 17 1 8.8187 -8.2581 4.0416 18 1 11.0400 -7.4189 4.5335 19 1 9.1312 -6.6061 5.7891 20 6 4.3161 -1.6450 1.9630 21 6 3.5038 -0.8668 0.9379 22 1 3.7668 -1.1909 -0.0690 23 6 1.9987 -0.8430 1.0923 24 1 -0.3633 0.5739 -0.8525 25 1 -0.3633 -1.0252 -0.0709 26 1 -0.3633 0.4512 0.9233 27 1 1.6441 1.8793 0.8958 28 1 1.6150 1.8891 -0.8782 29 1 3.8871 2.4215 0.0531 30 1 3.8993 0.9419 -0.9463 31 1 5.9918 1.1808 1.8036 32 1 5.9561 0.1805 0.3171 33 1 6.5633 -2.1460 0.7541 34 1 7.6356 -1.0906 1.7051 35 1 7.1148 -2.3998 3.7455 36 1 6.0425 -3.4553 2.7946 37 1 7.9599 -4.1231 1.3719 38 1 9.0329 -3.0679 2.3226 39 1 10.8961 -6.2342 2.0675 40 1 4.5200 -2.6510 1.5962 41 1 3.7805 -1.6908 2.9112 42 1 1.7300 -0.4137 2.0575 43 1 1.5999 -1.8540 1.0093 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309398735.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:16 Heat of formation + Delta-G solvation = -24.185819 kcal Electronic energy + Delta-G solvation = -18912.326261 eV Core-core repulsion = 16183.663181 eV Total energy + Delta-G solvation = -2728.663080 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.26812 -38.31999 -36.06025 -34.44968 -33.00086 -32.04467 -29.43126 -28.17158 -27.01249 -25.19738 -23.48295 -22.73698 -22.00805 -21.44343 -20.63467 -18.46996 -16.98121 -16.73163 -16.45180 -16.13277 -16.00014 -15.70811 -15.43962 -14.77646 -14.40561 -14.27388 -13.98016 -13.87418 -13.52375 -13.27790 -13.10399 -12.97649 -12.79814 -12.59859 -12.51573 -12.28312 -12.17280 -11.93175 -11.66495 -11.55583 -11.49944 -11.34180 -11.04597 -10.94435 -10.55490 -9.29188 -9.22506 -8.20369 -6.31614 1.39700 1.41503 1.52936 2.40923 2.85484 2.97445 3.12507 3.37916 3.69787 3.84765 4.11800 4.17875 4.23569 4.28794 4.36402 4.43383 4.51421 4.53763 4.59359 4.67152 4.68994 4.72666 4.76243 4.86719 4.91107 4.94547 5.00203 5.00919 5.02911 5.08210 5.15715 5.19522 5.25085 5.44376 5.51589 5.72861 5.85140 5.97518 6.07158 6.12114 6.19498 6.27472 6.84935 7.37574 8.91706 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.043198 B = 0.003578 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.024371 B = 7822.829763 C = 8193.708500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.572 5.572 3 C 0.065 3.935 4 C -0.100 4.100 5 C -0.095 4.095 6 H 0.081 0.919 7 C 0.047 3.953 8 N -0.537 5.537 9 C 0.064 3.936 10 C -0.087 4.087 11 C 0.026 3.974 12 C -0.543 4.543 13 H 0.058 0.942 14 C -0.002 4.002 15 N -0.934 5.934 16 Si 0.967 3.033 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.263 1.263 20 C 0.051 3.949 21 C -0.107 4.107 22 H 0.067 0.933 23 C 0.082 3.918 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.027 0.973 27 H 0.032 0.968 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.045 0.955 33 H 0.023 0.977 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.047 0.953 37 H -0.011 1.011 38 H -0.008 1.008 39 H 0.264 0.736 40 H 0.049 0.951 41 H 0.079 0.921 42 H 0.040 0.960 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.987 15.032 -4.329 24.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.297 5.297 3 C -0.063 4.063 4 C -0.138 4.138 5 C -0.114 4.114 6 H 0.099 0.901 7 C -0.080 4.080 8 N -0.261 5.261 9 C -0.064 4.064 10 C -0.125 4.125 11 C -0.011 4.011 12 C -0.581 4.581 13 H 0.077 0.923 14 C -0.199 4.199 15 N -0.574 5.574 16 Si 0.791 3.209 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.188 1.188 20 C -0.077 4.077 21 C -0.127 4.127 22 H 0.085 0.915 23 C -0.045 4.045 24 H 0.096 0.904 25 H 0.089 0.911 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.064 0.936 33 H 0.042 0.958 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.008 0.992 38 H 0.010 0.990 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.097 0.903 42 H 0.058 0.942 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.616 14.902 -4.294 24.229 hybrid contribution 0.310 -0.865 0.269 0.958 sum -18.306 14.037 -4.025 23.416 Atomic orbital electron populations 1.22321 0.85698 1.02745 1.00938 1.61094 1.08594 1.13541 1.46511 1.22009 0.94884 0.88195 1.01169 1.21425 0.94666 1.00772 0.96964 1.22018 0.94330 0.95545 0.99522 0.90078 1.22835 0.96653 0.92673 0.95811 1.64430 1.02195 1.06038 1.53436 1.22149 0.93516 0.94624 0.96119 1.21368 0.97860 0.95190 0.98096 1.18968 0.93151 0.93898 0.95124 1.21687 1.13586 1.12888 1.09965 0.92329 1.26009 0.95479 1.00676 0.97762 1.70101 1.18190 1.38130 1.31020 0.85422 0.77404 0.78829 0.79250 1.19667 1.20594 1.18752 1.22473 0.90149 0.96052 0.99025 1.21965 0.95521 0.96130 0.99111 0.91456 1.21640 0.93042 0.97794 0.92063 0.90431 0.91072 0.95423 0.95000 0.89633 0.89334 0.91686 0.89589 0.93621 0.95833 0.91542 0.93092 0.93416 0.99244 0.98997 0.92732 0.93271 0.90318 0.94161 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.61 127.69 1.23 1.65 16 2 N -0.57 -10.28 4.78 -923.12 -4.42 -14.69 16 3 C 0.07 1.01 5.42 86.72 0.47 1.48 16 4 C -0.10 -1.65 5.85 30.45 0.18 -1.47 16 5 C -0.10 -1.96 2.51 -10.30 -0.03 -1.98 16 6 H 0.08 1.69 8.09 -2.39 -0.02 1.67 16 7 C 0.05 1.18 6.34 85.85 0.54 1.72 16 8 N -0.54 -16.65 5.22 -886.70 -4.63 -21.28 16 9 C 0.06 2.37 4.57 86.30 0.39 2.77 16 10 C -0.09 -3.84 5.18 30.59 0.16 -3.68 16 11 C 0.03 1.44 4.97 29.84 0.15 1.59 16 12 C -0.54 -32.07 9.11 25.60 0.23 -31.84 16 13 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 14 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 15 N -0.93 -58.14 13.29 21.45 0.28 -57.86 16 16 Si 0.97 45.23 29.54 68.60 2.03 47.25 16 17 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 19 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 20 C 0.05 1.43 5.99 85.68 0.51 1.94 16 21 C -0.11 -2.47 2.40 -10.66 -0.03 -2.50 16 22 H 0.07 1.75 7.97 -2.39 -0.02 1.73 16 23 C 0.08 1.61 5.32 85.58 0.46 2.06 16 24 H 0.08 0.88 8.13 -2.39 -0.02 0.86 16 25 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.09 1.11 8.13 -2.39 -0.02 1.10 16 29 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 30 H 0.06 1.20 8.02 -2.39 -0.02 1.18 16 31 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.05 1.16 7.85 -2.38 -0.02 1.14 16 33 H 0.02 0.89 8.03 -2.39 -0.02 0.87 16 34 H 0.07 2.46 8.09 -2.39 -0.02 2.44 16 35 H 0.05 2.26 8.14 -2.39 -0.02 2.25 16 36 H 0.05 2.06 7.03 -2.39 -0.02 2.04 16 37 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 38 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 39 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 40 H 0.05 1.53 6.82 -2.39 -0.02 1.51 16 41 H 0.08 2.11 8.10 -2.39 -0.02 2.09 16 42 H 0.04 0.77 8.08 -2.38 -0.02 0.75 16 43 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -65.40 330.53 -1.07 -66.47 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 0.93 Total: 8.02 kcal Atomic # 6 Polarization: -32.64 SS G_CDS: 4.73 Total: -27.91 kcal Atomic # 7 Polarization: -85.07 SS G_CDS: -8.76 Total: -93.83 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -65.40 -1.07 -66.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309398735.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.285 kcal (2) G-P(sol) polarization free energy of solvation -65.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds