Wall clock time and date at job start Mon Mar 30 2020 04:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47355 * 110.99953 * 2 1 4 4 C 1.52309 * 107.91981 * 166.65429 * 3 2 1 5 5 C 1.51718 * 112.48236 * 57.76111 * 4 3 2 6 6 H 1.09001 * 109.64625 * 93.27948 * 5 4 3 7 7 C 1.55339 * 107.26373 * 212.25072 * 5 4 3 8 8 N 1.48477 * 105.17787 * 141.34798 * 7 5 4 9 9 C 1.46901 * 111.00798 * 203.81225 * 8 7 5 10 10 C 1.52992 * 109.47859 * 185.47121 * 9 8 7 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99594 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99875 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47061 * 90.00257 * 16 14 12 18 18 H 1.48497 * 109.46906 * 209.99430 * 16 14 12 19 19 H 1.48498 * 109.47403 * 329.99876 * 16 14 12 20 20 C 1.48964 * 104.36562 * 323.45677 * 8 7 5 21 21 C 1.51465 * 115.60411 * 328.73716 * 5 4 3 22 22 H 1.09006 * 106.08099 * 136.61388 * 21 5 4 23 23 C 1.46813 * 110.91442 * 238.86660 * 2 1 3 24 24 H 1.09004 * 109.47394 * 63.95561 * 1 2 3 25 25 H 1.09003 * 109.46732 * 183.95035 * 1 2 3 26 26 H 1.08995 * 109.47112 * 303.95223 * 1 2 3 27 27 H 1.09004 * 109.76883 * 47.05163 * 3 2 1 28 28 H 1.08993 * 109.81767 * 286.28892 * 3 2 1 29 29 H 1.09004 * 108.88311 * 296.98890 * 4 3 2 30 30 H 1.08995 * 108.88317 * 178.53565 * 4 3 2 31 31 H 1.09002 * 110.30120 * 22.42697 * 7 5 4 32 32 H 1.08994 * 110.30906 * 260.27861 * 7 5 4 33 33 H 1.09002 * 109.46980 * 65.46779 * 9 8 7 34 34 H 1.09001 * 109.46628 * 305.47201 * 9 8 7 35 35 H 1.09002 * 109.47103 * 59.99734 * 10 9 8 36 36 H 1.08998 * 109.46862 * 300.00546 * 10 9 8 37 37 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 38 38 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 39 39 H 0.97002 * 119.99739 * 180.02562 * 15 14 12 40 40 H 1.09004 * 110.67090 * 158.79961 * 20 8 7 41 41 H 1.09001 * 110.66393 * 281.93095 * 20 8 7 42 42 H 1.08988 * 109.42314 * 57.73695 * 23 2 1 43 43 H 1.08998 * 108.23488 * 299.63217 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9970 1.3757 0.0000 4 6 3.4814 1.3079 0.3345 5 6 4.2563 0.4394 -0.6387 6 1 4.6642 1.0586 -1.4377 7 6 5.4177 -0.2193 0.1553 8 7 5.5177 -1.6016 -0.3774 9 6 6.1418 -2.5000 0.6030 10 6 6.3518 -3.8776 -0.0285 11 6 7.0024 -4.8130 0.9925 12 6 7.2087 -6.1701 0.3706 13 1 6.9063 -6.3476 -0.6509 14 6 7.7843 -7.1849 1.1054 15 7 7.9647 -8.3690 0.5624 16 14 8.3079 -6.8777 2.8720 17 1 7.1797 -7.1932 3.7846 18 1 9.4683 -7.7435 3.2020 19 1 8.6918 -5.4524 3.0338 20 6 4.1066 -1.9985 -0.6427 21 6 3.4877 -0.7212 -1.2355 22 1 3.7385 -0.7359 -2.2962 23 6 1.9930 -0.7091 -1.1739 24 1 -0.3634 0.4512 -0.9233 25 1 -0.3633 -1.0253 0.0708 26 1 -0.3633 0.5739 0.8524 27 1 1.4766 1.9703 0.7509 28 1 1.8609 1.8237 -0.9842 29 1 3.5984 0.9022 1.3395 30 1 3.8942 2.3164 0.3131 31 1 5.1839 -0.2403 1.2197 32 1 6.3484 0.3209 -0.0177 33 1 5.4930 -2.5946 1.4738 34 1 7.1043 -2.0905 0.9099 35 1 7.0007 -3.7830 -0.8992 36 1 5.3894 -4.2870 -0.3354 37 1 6.3539 -4.9076 1.8635 38 1 7.9649 -4.4033 1.2990 39 1 8.3694 -9.0831 1.0795 40 1 4.0656 -2.8160 -1.3626 41 1 3.6042 -2.2752 0.2842 42 1 1.6099 -0.2414 -2.0807 43 1 1.6367 -1.7385 -1.1377 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309398740.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:19 Heat of formation + Delta-G solvation = -1.229001 kcal Electronic energy + Delta-G solvation = -19053.443578 eV Core-core repulsion = 16325.775980 eV Total energy + Delta-G solvation = -2727.667598 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.25223 -37.31391 -34.49596 -32.89884 -32.12766 -30.94936 -28.40835 -26.84456 -26.01483 -23.66983 -22.56812 -22.09466 -20.86247 -19.93476 -18.44813 -16.66261 -16.55309 -15.76697 -15.33823 -15.06291 -14.55923 -14.27208 -14.11387 -13.80758 -13.22246 -13.16536 -12.87860 -12.60149 -12.33397 -12.14817 -12.05448 -11.67715 -11.51628 -11.46742 -11.06931 -10.83529 -10.76421 -10.53671 -10.44629 -10.19958 -9.87904 -9.61479 -9.49748 -9.11173 -8.60561 -8.48422 -8.20238 -5.98965 -3.96220 3.34495 3.41521 3.46008 3.70664 4.16852 4.46203 4.49161 4.50178 4.67947 4.88804 4.97022 5.09323 5.18286 5.27691 5.33061 5.35183 5.35933 5.47891 5.54047 5.59327 5.61466 5.70802 5.73929 5.80690 5.85551 5.94295 5.96894 6.12245 6.20947 6.24082 6.30008 6.59508 6.65375 6.78467 6.82418 6.95240 7.13802 7.31938 7.43242 7.53290 7.86284 8.61034 9.06907 9.63991 11.14719 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.034851 B = 0.003965 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.220877 B = 7060.014559 C = 7249.501538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.530 5.530 3 C 0.050 3.950 4 C -0.108 4.108 5 C -0.077 4.077 6 H 0.073 0.927 7 C 0.035 3.965 8 N -0.513 5.513 9 C 0.044 3.956 10 C -0.095 4.095 11 C -0.014 4.014 12 C -0.517 4.517 13 H 0.071 0.929 14 C 0.065 3.935 15 N -0.906 5.906 16 Si 0.880 3.120 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.266 1.266 20 C 0.044 3.956 21 C -0.084 4.084 22 H 0.066 0.934 23 C 0.065 3.935 24 H 0.024 0.976 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.036 0.964 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.008 0.992 38 H 0.015 0.985 39 H 0.262 0.738 40 H 0.083 0.917 41 H 0.049 0.951 42 H 0.032 0.968 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.112 21.569 -1.316 25.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.254 5.254 3 C -0.078 4.078 4 C -0.146 4.146 5 C -0.096 4.096 6 H 0.092 0.908 7 C -0.093 4.093 8 N -0.237 5.237 9 C -0.084 4.084 10 C -0.133 4.133 11 C -0.052 4.052 12 C -0.555 4.555 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.545 5.545 16 Si 0.708 3.292 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.190 1.190 20 C -0.084 4.084 21 C -0.103 4.103 22 H 0.085 0.915 23 C -0.063 4.063 24 H 0.043 0.957 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.027 0.973 38 H 0.033 0.967 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.067 0.933 42 H 0.051 0.949 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.520 21.096 -1.325 24.567 hybrid contribution -0.416 0.360 0.940 1.089 sum -12.936 21.456 -0.385 25.057 Atomic orbital electron populations 1.22413 0.87471 1.02454 1.00327 1.62880 1.07575 1.14300 1.40626 1.22118 0.96040 0.89611 1.00053 1.21291 0.93911 0.99484 0.99952 1.21074 0.95306 0.95707 0.97491 0.90830 1.23525 0.98143 0.90761 0.96883 1.65463 1.15730 1.01545 1.40924 1.22459 0.98489 0.94608 0.92829 1.21410 1.00737 0.91599 0.99539 1.19559 0.95384 0.95403 0.94807 1.21158 1.39905 0.93644 1.00778 0.91050 1.25041 0.95361 0.95005 0.98203 1.69922 1.44883 1.02504 1.37188 0.86768 0.78382 0.78559 0.85514 1.20372 1.21435 1.19030 1.23177 0.88404 0.96516 1.00300 1.20455 0.93265 0.95444 1.01184 0.91507 1.21377 0.94501 0.99672 0.90761 0.95739 0.91173 0.91370 0.90833 0.94616 0.91151 0.91792 0.93690 0.90702 0.95102 0.91362 0.92076 0.92999 0.97331 0.96685 0.92825 0.89900 0.93262 0.94945 0.90467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.58 60.06 0.58 0.75 16 2 N -0.53 -5.37 5.05 -245.18 -1.24 -6.61 16 3 C 0.05 0.44 5.55 -3.93 -0.02 0.42 16 4 C -0.11 -1.01 5.53 -27.73 -0.15 -1.16 16 5 C -0.08 -0.82 3.32 -90.81 -0.30 -1.13 16 6 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 7 C 0.04 0.44 6.03 -1.71 -0.01 0.43 16 8 N -0.51 -7.89 5.36 -229.42 -1.23 -9.12 16 9 C 0.04 0.77 4.79 -3.83 -0.02 0.75 16 10 C -0.09 -1.98 5.21 -26.74 -0.14 -2.12 16 11 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 12 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 16 13 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 14 C 0.06 1.93 5.47 -17.82 -0.10 1.84 16 15 N -0.91 -28.57 13.96 55.43 0.77 -27.80 16 16 Si 0.88 22.27 27.47 -169.99 -4.67 17.61 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.27 -6.46 6.54 56.52 0.37 -6.10 16 20 C 0.04 0.62 5.09 -2.25 -0.01 0.61 16 21 C -0.08 -0.97 2.69 -92.65 -0.25 -1.21 16 22 H 0.07 0.77 8.06 -51.93 -0.42 0.35 16 23 C 0.07 0.67 4.89 -5.56 -0.03 0.64 16 24 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.49 8.04 -51.93 -0.42 0.07 16 27 H 0.07 0.57 7.98 -51.93 -0.41 0.15 16 28 H 0.04 0.30 8.01 -51.93 -0.42 -0.11 16 29 H 0.07 0.73 7.07 -51.93 -0.37 0.37 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.58 6.92 -51.93 -0.36 0.22 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.03 0.54 7.90 -51.93 -0.41 0.13 16 34 H 0.07 1.17 8.13 -51.93 -0.42 0.74 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.05 1.09 7.25 -51.93 -0.38 0.71 16 37 H 0.01 0.21 7.57 -51.93 -0.39 -0.19 16 38 H 0.01 0.37 7.20 -51.93 -0.37 0.00 16 39 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 40 H 0.08 1.21 7.75 -51.93 -0.40 0.81 16 41 H 0.05 0.74 7.85 -51.93 -0.41 0.33 16 42 H 0.03 0.31 8.13 -51.94 -0.42 -0.11 16 43 H 0.08 0.81 7.83 -51.93 -0.41 0.40 16 LS Contribution 325.28 15.07 4.90 4.90 Total: -1.00 -31.35 325.28 -10.49 -41.84 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -8.13 Total: -4.65 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -0.90 Total: -16.18 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: -1.70 Total: -43.52 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.67 Total: 17.61 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.35 -10.49 -41.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309398740.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.614 kcal (2) G-P(sol) polarization free energy of solvation -31.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds