Wall clock time and date at job start Mon Mar 30 2020 04:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47355 * 110.99953 * 2 1 4 4 C 1.52309 * 107.91981 * 166.65429 * 3 2 1 5 5 C 1.51718 * 112.48236 * 57.76111 * 4 3 2 6 6 H 1.09001 * 109.64625 * 93.27948 * 5 4 3 7 7 C 1.55339 * 107.26373 * 212.25072 * 5 4 3 8 8 N 1.48477 * 105.17787 * 141.34798 * 7 5 4 9 9 C 1.46901 * 111.00798 * 203.81225 * 8 7 5 10 10 C 1.52992 * 109.47859 * 185.47121 * 9 8 7 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99594 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99875 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47061 * 90.00257 * 16 14 12 18 18 H 1.48497 * 109.46906 * 209.99430 * 16 14 12 19 19 H 1.48498 * 109.47403 * 329.99876 * 16 14 12 20 20 C 1.48964 * 104.36562 * 323.45677 * 8 7 5 21 21 C 1.51465 * 115.60411 * 328.73716 * 5 4 3 22 22 H 1.09006 * 106.08099 * 136.61388 * 21 5 4 23 23 C 1.46813 * 110.91442 * 238.86660 * 2 1 3 24 24 H 1.09004 * 109.47394 * 63.95561 * 1 2 3 25 25 H 1.09003 * 109.46732 * 183.95035 * 1 2 3 26 26 H 1.08995 * 109.47112 * 303.95223 * 1 2 3 27 27 H 1.09004 * 109.76883 * 47.05163 * 3 2 1 28 28 H 1.08993 * 109.81767 * 286.28892 * 3 2 1 29 29 H 1.09004 * 108.88311 * 296.98890 * 4 3 2 30 30 H 1.08995 * 108.88317 * 178.53565 * 4 3 2 31 31 H 1.09002 * 110.30120 * 22.42697 * 7 5 4 32 32 H 1.08994 * 110.30906 * 260.27861 * 7 5 4 33 33 H 1.09002 * 109.46980 * 65.46779 * 9 8 7 34 34 H 1.09001 * 109.46628 * 305.47201 * 9 8 7 35 35 H 1.09002 * 109.47103 * 59.99734 * 10 9 8 36 36 H 1.08998 * 109.46862 * 300.00546 * 10 9 8 37 37 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 38 38 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 39 39 H 0.97002 * 119.99739 * 180.02562 * 15 14 12 40 40 H 1.09004 * 110.67090 * 158.79961 * 20 8 7 41 41 H 1.09001 * 110.66393 * 281.93095 * 20 8 7 42 42 H 1.08988 * 109.42314 * 57.73695 * 23 2 1 43 43 H 1.08998 * 108.23488 * 299.63217 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9970 1.3757 0.0000 4 6 3.4814 1.3079 0.3345 5 6 4.2563 0.4394 -0.6387 6 1 4.6642 1.0586 -1.4377 7 6 5.4177 -0.2193 0.1553 8 7 5.5177 -1.6016 -0.3774 9 6 6.1418 -2.5000 0.6030 10 6 6.3518 -3.8776 -0.0285 11 6 7.0024 -4.8130 0.9925 12 6 7.2087 -6.1701 0.3706 13 1 6.9063 -6.3476 -0.6509 14 6 7.7843 -7.1849 1.1054 15 7 7.9647 -8.3690 0.5624 16 14 8.3079 -6.8777 2.8720 17 1 7.1797 -7.1932 3.7846 18 1 9.4683 -7.7435 3.2020 19 1 8.6918 -5.4524 3.0338 20 6 4.1066 -1.9985 -0.6427 21 6 3.4877 -0.7212 -1.2355 22 1 3.7385 -0.7359 -2.2962 23 6 1.9930 -0.7091 -1.1739 24 1 -0.3634 0.4512 -0.9233 25 1 -0.3633 -1.0253 0.0708 26 1 -0.3633 0.5739 0.8524 27 1 1.4766 1.9703 0.7509 28 1 1.8609 1.8237 -0.9842 29 1 3.5984 0.9022 1.3395 30 1 3.8942 2.3164 0.3131 31 1 5.1839 -0.2403 1.2197 32 1 6.3484 0.3209 -0.0177 33 1 5.4930 -2.5946 1.4738 34 1 7.1043 -2.0905 0.9099 35 1 7.0007 -3.7830 -0.8992 36 1 5.3894 -4.2870 -0.3354 37 1 6.3539 -4.9076 1.8635 38 1 7.9649 -4.4033 1.2990 39 1 8.3694 -9.0831 1.0795 40 1 4.0656 -2.8160 -1.3626 41 1 3.6042 -2.2752 0.2842 42 1 1.6099 -0.2414 -2.0807 43 1 1.6367 -1.7385 -1.1377 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309398740.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:19 Heat of formation + Delta-G solvation = -22.947349 kcal Electronic energy + Delta-G solvation = -19054.385356 eV Core-core repulsion = 16325.775980 eV Total energy + Delta-G solvation = -2728.609376 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.17436 -38.31482 -36.10024 -34.51527 -33.26932 -32.42985 -29.55215 -28.18950 -27.10343 -24.92007 -23.58630 -23.12786 -22.17757 -21.60865 -19.32338 -18.87341 -17.46057 -16.80087 -16.40235 -16.20026 -15.83032 -15.77777 -15.25626 -15.03954 -14.65008 -14.28248 -14.06211 -13.89840 -13.63306 -13.27803 -13.05377 -12.93498 -12.76797 -12.59420 -12.51456 -12.27450 -11.91243 -11.79594 -11.65575 -11.43908 -11.42308 -11.21722 -11.20261 -11.05953 -10.76657 -9.41802 -9.30472 -8.29725 -6.34129 1.35536 1.37759 1.50290 2.36445 2.99791 3.04865 3.05409 3.52769 3.62031 3.84267 4.05474 4.14724 4.23932 4.28449 4.41637 4.44696 4.49348 4.55650 4.63764 4.65691 4.69934 4.70482 4.79925 4.80059 4.88349 4.94353 4.95226 4.98054 5.02786 5.06432 5.15957 5.17476 5.33010 5.44215 5.50982 5.58245 5.65496 5.94289 6.07119 6.09089 6.16575 6.29838 6.73684 7.30362 8.87428 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.034851 B = 0.003965 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.220877 B = 7060.014559 C = 7249.501538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.549 5.549 3 C 0.050 3.950 4 C -0.105 4.105 5 C -0.072 4.072 6 H 0.085 0.915 7 C 0.035 3.965 8 N -0.526 5.526 9 C 0.056 3.944 10 C -0.085 4.085 11 C -0.009 4.009 12 C -0.534 4.534 13 H 0.028 0.972 14 C 0.002 3.998 15 N -0.953 5.953 16 Si 0.954 3.046 17 H -0.266 1.266 18 H -0.282 1.282 19 H -0.246 1.246 20 C 0.044 3.956 21 C -0.078 4.078 22 H 0.065 0.935 23 C 0.068 3.932 24 H 0.032 0.968 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.042 0.958 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.032 0.968 34 H 0.075 0.925 35 H 0.047 0.953 36 H 0.042 0.958 37 H 0.017 0.983 38 H 0.022 0.978 39 H 0.267 0.733 40 H 0.069 0.931 41 H 0.037 0.963 42 H 0.043 0.957 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.532 24.177 0.144 27.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.273 5.273 3 C -0.077 4.077 4 C -0.143 4.143 5 C -0.091 4.091 6 H 0.103 0.897 7 C -0.093 4.093 8 N -0.250 5.250 9 C -0.072 4.072 10 C -0.123 4.123 11 C -0.047 4.047 12 C -0.572 4.572 13 H 0.046 0.954 14 C -0.195 4.195 15 N -0.593 5.593 16 Si 0.777 3.223 17 H -0.191 1.191 18 H -0.208 1.208 19 H -0.169 1.169 20 C -0.084 4.084 21 C -0.097 4.097 22 H 0.084 0.916 23 C -0.060 4.060 24 H 0.051 0.949 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.051 0.949 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.035 0.965 38 H 0.040 0.960 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.956 23.729 0.123 27.036 hybrid contribution -0.315 -0.501 0.377 0.702 sum -13.271 23.228 0.500 26.757 Atomic orbital electron populations 1.22433 0.86361 1.02589 1.01193 1.62879 1.08775 1.15203 1.40480 1.22162 0.95650 0.89071 1.00857 1.21264 0.94290 1.00072 0.98633 1.21093 0.94614 0.95531 0.97895 0.89700 1.23616 0.99491 0.89096 0.97100 1.65405 1.16350 1.02655 1.40551 1.22203 0.99238 0.92903 0.92843 1.21220 0.99499 0.93276 0.98311 1.19491 0.96117 0.93527 0.95580 1.21497 1.39954 0.96374 0.99376 0.95358 1.26072 0.95240 0.94465 1.03675 1.70079 1.46004 1.03768 1.39498 0.85597 0.78345 0.79554 0.78782 1.19102 1.20755 1.16908 1.23151 0.88064 0.97668 0.99546 1.20424 0.94107 0.94334 1.00850 0.91602 1.21298 0.93580 0.99598 0.91570 0.94923 0.91512 0.90354 0.89523 0.93956 0.92339 0.89772 0.93714 0.89807 0.94938 0.90611 0.93401 0.93944 0.96514 0.96016 0.92454 0.91291 0.94420 0.93850 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.58 127.69 1.22 1.54 16 2 N -0.55 -10.08 5.05 -929.62 -4.70 -14.77 16 3 C 0.05 0.75 5.55 85.99 0.48 1.22 16 4 C -0.10 -1.66 5.53 29.94 0.17 -1.49 16 5 C -0.07 -1.39 3.32 -10.91 -0.04 -1.43 16 6 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 7 C 0.03 0.81 6.03 86.80 0.52 1.33 16 8 N -0.53 -15.72 5.36 -879.74 -4.72 -20.43 16 9 C 0.06 1.91 4.79 86.30 0.41 2.32 16 10 C -0.08 -3.59 5.21 30.59 0.16 -3.43 16 11 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 12 C -0.53 -32.27 9.66 25.60 0.25 -32.02 16 13 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 14 C 0.00 0.12 5.47 84.66 0.46 0.58 16 15 N -0.95 -61.50 13.96 21.45 0.30 -61.20 16 16 Si 0.95 45.44 27.47 68.60 1.88 47.32 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 18 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 19 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16 20 C 0.04 1.23 5.09 86.18 0.44 1.66 16 21 C -0.08 -1.69 2.69 -12.11 -0.03 -1.72 16 22 H 0.07 1.43 8.06 -2.38 -0.02 1.41 16 23 C 0.07 1.31 4.89 85.23 0.42 1.73 16 24 H 0.03 0.41 8.14 -2.38 -0.02 0.39 16 25 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.08 0.94 8.04 -2.39 -0.02 0.93 16 27 H 0.09 1.07 7.98 -2.38 -0.02 1.05 16 28 H 0.04 0.58 8.01 -2.39 -0.02 0.57 16 29 H 0.06 1.08 7.07 -2.38 -0.02 1.07 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.04 1.06 6.92 -2.39 -0.02 1.04 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.03 1.09 7.90 -2.39 -0.02 1.07 16 34 H 0.08 2.45 8.13 -2.39 -0.02 2.43 16 35 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.04 1.83 7.25 -2.39 -0.02 1.81 16 37 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 38 H 0.02 1.03 7.20 -2.39 -0.02 1.02 16 39 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 40 H 0.07 2.08 7.75 -2.39 -0.02 2.06 16 41 H 0.04 1.14 7.85 -2.39 -0.02 1.12 16 42 H 0.04 0.74 8.13 -2.39 -0.02 0.72 16 43 H 0.07 1.42 7.83 -2.39 -0.02 1.40 16 Total: -1.00 -68.09 325.28 -1.77 -69.87 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 0.88 Total: 9.24 kcal Atomic # 6 Polarization: -34.61 SS G_CDS: 4.58 Total: -30.03 kcal Atomic # 7 Polarization: -87.29 SS G_CDS: -9.12 Total: -96.41 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.88 Total: 47.32 kcal Total: -68.09 -1.77 -69.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309398740.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.920 kcal (2) G-P(sol) polarization free energy of solvation -68.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds