Wall clock time and date at job start Mon Mar 30 2020 04:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46295 * 110.99727 * 2 1 4 4 C 1.53902 * 112.04887 * 178.99623 * 3 2 1 5 5 C 1.51639 * 106.74528 * 56.35072 * 4 3 2 6 6 H 1.08998 * 110.52625 * 56.96241 * 5 4 3 7 7 C 1.52959 * 117.08282 * 185.94398 * 5 4 3 8 8 N 1.49146 * 103.32558 * 155.80994 * 7 5 4 9 9 C 1.46904 * 111.00318 * 213.49130 * 8 7 5 10 10 C 1.52997 * 109.46983 * 190.34491 * 9 8 7 11 11 C 1.53004 * 109.47000 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47211 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99694 * 180.27574 * 12 11 10 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 11 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 11 17 17 H 1.48504 * 109.47209 * 89.99886 * 16 14 12 18 18 H 1.48501 * 109.47358 * 209.99377 * 16 14 12 19 19 H 1.48496 * 109.47341 * 329.99989 * 16 14 12 20 20 C 1.48737 * 108.27164 * 335.56373 * 8 7 5 21 21 C 1.52182 * 105.73059 * 356.50698 * 20 8 7 22 22 H 1.08998 * 109.81254 * 272.96954 * 21 20 8 23 23 C 1.47800 * 110.98584 * 232.14364 * 2 1 3 24 24 H 1.08999 * 109.46761 * 63.95434 * 1 2 3 25 25 H 1.08995 * 109.46772 * 183.95149 * 1 2 3 26 26 H 1.08993 * 109.47255 * 303.95148 * 1 2 3 27 27 H 1.09004 * 108.96945 * 58.33862 * 3 2 1 28 28 H 1.09000 * 108.90237 * 299.61315 * 3 2 1 29 29 H 1.09000 * 109.99499 * 297.04570 * 4 3 2 30 30 H 1.08996 * 109.99670 * 175.66060 * 4 3 2 31 31 H 1.09007 * 110.64695 * 37.35493 * 7 5 4 32 32 H 1.08991 * 110.65034 * 274.27120 * 7 5 4 33 33 H 1.08995 * 109.46789 * 70.34107 * 9 8 7 34 34 H 1.08998 * 109.46713 * 310.34549 * 9 8 7 35 35 H 1.09000 * 109.47849 * 59.99743 * 10 9 8 36 36 H 1.09007 * 109.47288 * 299.99336 * 10 9 8 37 37 H 1.09000 * 109.47211 * 59.99130 * 11 10 9 38 38 H 1.09007 * 109.46376 * 299.99672 * 11 10 9 39 39 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 40 40 H 1.08997 * 110.19939 * 115.57060 * 20 8 7 41 41 H 1.08998 * 110.19627 * 237.36205 * 20 8 7 42 42 H 1.09001 * 109.85493 * 65.03565 * 23 2 1 43 43 H 1.08997 * 110.10464 * 303.70540 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9932 1.3658 0.0000 4 6 3.5318 1.3941 0.0250 5 6 4.0030 0.5901 -1.1712 6 1 3.5876 0.9973 -2.0930 7 6 5.5078 0.3461 -1.2972 8 7 5.5872 -0.8903 -2.1274 9 6 6.7412 -1.7122 -1.7389 10 6 6.9420 -2.8277 -2.7666 11 6 8.1435 -3.6841 -2.3616 12 6 8.3417 -4.7824 -3.3743 13 1 7.6769 -4.8619 -4.2217 14 6 9.3679 -5.6894 -3.2154 15 7 10.1772 -5.5927 -2.1833 16 14 9.6088 -7.0555 -4.4665 17 1 10.5211 -6.5876 -5.5408 18 1 10.2004 -8.2415 -3.7967 19 1 8.2968 -7.4233 -5.0567 20 6 4.3160 -1.6448 -1.9631 21 6 3.5039 -0.8667 -0.9380 22 1 3.7696 -1.1919 0.0678 23 6 1.9983 -0.8469 -1.0896 24 1 -0.3633 0.4512 -0.9233 25 1 -0.3633 -1.0252 0.0708 26 1 -0.3633 0.5739 0.8524 27 1 1.6150 1.8905 0.8774 28 1 1.6440 1.8781 -0.8965 29 1 3.8980 0.9411 0.9462 30 1 3.8870 2.4216 -0.0532 31 1 5.9536 0.1799 -0.3165 32 1 5.9915 1.1811 -1.8039 33 1 6.5609 -2.1506 -0.7574 34 1 7.6345 -1.0889 -1.6999 35 1 7.1222 -2.3893 -3.7482 36 1 6.0486 -3.4511 -2.8056 37 1 7.9628 -4.1224 -1.3801 38 1 9.0370 -3.0609 -2.3224 39 1 10.8988 -6.2311 -2.0714 40 1 3.7803 -1.6907 -2.9113 41 1 4.5202 -2.6512 -1.5978 42 1 1.7269 -0.4203 -2.0552 43 1 1.6022 -1.8587 -1.0038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309398742.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:22 Heat of formation + Delta-G solvation = -4.294591 kcal Electronic energy + Delta-G solvation = -18910.550647 eV Core-core repulsion = 16182.750115 eV Total energy + Delta-G solvation = -2727.800532 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.30181 -37.28193 -34.35206 -32.86620 -31.81860 -30.63896 -28.24101 -26.84774 -25.78057 -23.82983 -22.12664 -21.80125 -20.62873 -20.31875 -19.36765 -16.27768 -15.83156 -15.69736 -15.23542 -15.13887 -14.82635 -14.39823 -14.00842 -13.64838 -13.25207 -13.07620 -12.78064 -12.47362 -12.17784 -12.15673 -12.04271 -11.77199 -11.38042 -11.30486 -10.95829 -10.78029 -10.70781 -10.61347 -10.47822 -10.39752 -10.09144 -9.58891 -9.26667 -9.00444 -8.50445 -8.29967 -8.02207 -5.95369 -3.97180 3.35239 3.41069 3.44922 3.58759 4.16030 4.29136 4.50657 4.58656 4.71099 4.93241 5.07333 5.09996 5.20085 5.33399 5.39920 5.40205 5.40422 5.47938 5.58786 5.60008 5.62426 5.65697 5.76393 5.83341 5.85943 5.92813 5.95040 6.11194 6.21298 6.37848 6.38845 6.75613 6.81233 6.83607 6.90536 7.14206 7.28801 7.45940 7.73965 7.89275 8.05621 8.49302 9.10161 9.66576 11.16163 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.043251 B = 0.003576 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.222517 B = 7827.189841 C = 8197.181441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.559 5.559 3 C 0.066 3.934 4 C -0.105 4.105 5 C -0.105 4.105 6 H 0.079 0.921 7 C 0.050 3.950 8 N -0.528 5.528 9 C 0.051 3.949 10 C -0.103 4.103 11 C 0.021 3.979 12 C -0.517 4.517 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.052 3.948 21 C -0.116 4.116 22 H 0.080 0.920 23 C 0.078 3.922 24 H 0.023 0.977 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.027 0.973 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.029 0.971 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.046 0.954 37 H 0.013 0.987 38 H 0.015 0.985 39 H 0.260 0.740 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.037 0.963 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.579 14.356 4.929 23.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.284 5.284 3 C -0.062 4.062 4 C -0.143 4.143 5 C -0.124 4.124 6 H 0.097 0.903 7 C -0.078 4.078 8 N -0.251 5.251 9 C -0.077 4.077 10 C -0.141 4.141 11 C -0.016 4.016 12 C -0.555 4.555 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.076 4.076 21 C -0.136 4.136 22 H 0.099 0.901 23 C -0.049 4.049 24 H 0.041 0.959 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.046 0.954 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.031 0.969 38 H 0.033 0.967 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.056 0.944 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.193 14.201 4.895 22.830 hybrid contribution -0.129 -0.683 -0.488 0.849 sum -17.321 13.518 4.407 22.410 Atomic orbital electron populations 1.22274 0.86983 1.02251 1.00220 1.61016 1.07315 1.12976 1.47095 1.21967 0.95405 0.88516 1.00328 1.21439 0.94231 1.00222 0.98418 1.22083 0.95979 0.95841 0.98518 0.90269 1.22741 0.94919 0.93867 0.96244 1.64485 1.02556 1.05497 1.52596 1.22450 0.92174 0.95390 0.97677 1.21628 1.00148 0.94863 0.97466 1.19080 0.92021 0.93930 0.96582 1.21263 1.13279 1.12019 1.08987 0.92687 1.25030 0.96022 0.97914 0.95588 1.69966 1.17800 1.37003 1.28912 0.86601 0.78322 0.81665 0.81456 1.20678 1.21283 1.19882 1.22479 0.90353 0.96682 0.98094 1.22114 0.94528 0.96116 1.00819 0.90137 1.21715 0.94308 0.97284 0.91601 0.95867 0.91302 0.91559 0.90959 0.95432 0.90913 0.91106 0.93419 0.90445 0.95235 0.91373 0.92693 0.93566 0.96864 0.96668 0.93074 0.90847 0.91608 0.94445 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.61 60.07 0.58 0.82 16 2 N -0.56 -5.58 4.78 -243.12 -1.16 -6.74 16 3 C 0.07 0.59 5.43 -3.68 -0.02 0.57 16 4 C -0.10 -0.98 5.85 -26.95 -0.16 -1.14 16 5 C -0.11 -1.17 2.53 -89.86 -0.23 -1.40 16 6 H 0.08 0.92 8.05 -51.93 -0.42 0.50 16 7 C 0.05 0.65 6.33 -2.60 -0.02 0.63 16 8 N -0.53 -8.28 5.22 -231.61 -1.21 -9.49 16 9 C 0.05 0.92 4.58 -3.82 -0.02 0.90 16 10 C -0.10 -2.22 5.18 -26.73 -0.14 -2.36 16 11 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 12 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 13 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 16 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 20 C 0.05 0.74 5.99 -3.22 -0.02 0.72 16 21 C -0.12 -1.38 2.39 -90.41 -0.22 -1.60 16 22 H 0.08 1.06 7.98 -51.93 -0.41 0.65 16 23 C 0.08 0.82 5.34 -4.17 -0.02 0.80 16 24 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 27 H 0.07 0.58 8.13 -51.93 -0.42 0.15 16 28 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.73 8.02 -51.93 -0.42 0.31 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.62 7.85 -51.93 -0.41 0.21 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.03 0.54 8.02 -51.93 -0.42 0.12 16 34 H 0.07 1.24 8.08 -51.93 -0.42 0.82 16 35 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.05 0.98 7.05 -51.93 -0.37 0.62 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 41 H 0.07 1.01 6.83 -51.93 -0.35 0.65 16 42 H 0.04 0.39 8.06 -51.93 -0.42 -0.03 16 43 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 330.52 15.07 4.98 4.98 Total: -1.00 -30.58 330.52 -10.72 -41.30 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -8.24 Total: -4.89 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -0.81 Total: -15.45 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: -1.63 Total: -42.99 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.58 -10.72 -41.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309398742.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.005 kcal (2) G-P(sol) polarization free energy of solvation -30.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds