Wall clock time and date at job start Mon Mar 30 2020 04:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46295 * 110.99727 * 2 1 4 4 C 1.53902 * 112.04887 * 178.99623 * 3 2 1 5 5 C 1.51639 * 106.74528 * 56.35072 * 4 3 2 6 6 H 1.08998 * 110.52625 * 56.96241 * 5 4 3 7 7 C 1.52959 * 117.08282 * 185.94398 * 5 4 3 8 8 N 1.49146 * 103.32558 * 155.80994 * 7 5 4 9 9 C 1.46904 * 111.00318 * 213.49130 * 8 7 5 10 10 C 1.52997 * 109.46983 * 190.34491 * 9 8 7 11 11 C 1.53004 * 109.47000 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47211 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99694 * 180.27574 * 12 11 10 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 11 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 11 17 17 H 1.48504 * 109.47209 * 89.99886 * 16 14 12 18 18 H 1.48501 * 109.47358 * 209.99377 * 16 14 12 19 19 H 1.48496 * 109.47341 * 329.99989 * 16 14 12 20 20 C 1.48737 * 108.27164 * 335.56373 * 8 7 5 21 21 C 1.52182 * 105.73059 * 356.50698 * 20 8 7 22 22 H 1.08998 * 109.81254 * 272.96954 * 21 20 8 23 23 C 1.47800 * 110.98584 * 232.14364 * 2 1 3 24 24 H 1.08999 * 109.46761 * 63.95434 * 1 2 3 25 25 H 1.08995 * 109.46772 * 183.95149 * 1 2 3 26 26 H 1.08993 * 109.47255 * 303.95148 * 1 2 3 27 27 H 1.09004 * 108.96945 * 58.33862 * 3 2 1 28 28 H 1.09000 * 108.90237 * 299.61315 * 3 2 1 29 29 H 1.09000 * 109.99499 * 297.04570 * 4 3 2 30 30 H 1.08996 * 109.99670 * 175.66060 * 4 3 2 31 31 H 1.09007 * 110.64695 * 37.35493 * 7 5 4 32 32 H 1.08991 * 110.65034 * 274.27120 * 7 5 4 33 33 H 1.08995 * 109.46789 * 70.34107 * 9 8 7 34 34 H 1.08998 * 109.46713 * 310.34549 * 9 8 7 35 35 H 1.09000 * 109.47849 * 59.99743 * 10 9 8 36 36 H 1.09007 * 109.47288 * 299.99336 * 10 9 8 37 37 H 1.09000 * 109.47211 * 59.99130 * 11 10 9 38 38 H 1.09007 * 109.46376 * 299.99672 * 11 10 9 39 39 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 40 40 H 1.08997 * 110.19939 * 115.57060 * 20 8 7 41 41 H 1.08998 * 110.19627 * 237.36205 * 20 8 7 42 42 H 1.09001 * 109.85493 * 65.03565 * 23 2 1 43 43 H 1.08997 * 110.10464 * 303.70540 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9932 1.3658 0.0000 4 6 3.5318 1.3941 0.0250 5 6 4.0030 0.5901 -1.1712 6 1 3.5876 0.9973 -2.0930 7 6 5.5078 0.3461 -1.2972 8 7 5.5872 -0.8903 -2.1274 9 6 6.7412 -1.7122 -1.7389 10 6 6.9420 -2.8277 -2.7666 11 6 8.1435 -3.6841 -2.3616 12 6 8.3417 -4.7824 -3.3743 13 1 7.6769 -4.8619 -4.2217 14 6 9.3679 -5.6894 -3.2154 15 7 10.1772 -5.5927 -2.1833 16 14 9.6088 -7.0555 -4.4665 17 1 10.5211 -6.5876 -5.5408 18 1 10.2004 -8.2415 -3.7967 19 1 8.2968 -7.4233 -5.0567 20 6 4.3160 -1.6448 -1.9631 21 6 3.5039 -0.8667 -0.9380 22 1 3.7696 -1.1919 0.0678 23 6 1.9983 -0.8469 -1.0896 24 1 -0.3633 0.4512 -0.9233 25 1 -0.3633 -1.0252 0.0708 26 1 -0.3633 0.5739 0.8524 27 1 1.6150 1.8905 0.8774 28 1 1.6440 1.8781 -0.8965 29 1 3.8980 0.9411 0.9462 30 1 3.8870 2.4216 -0.0532 31 1 5.9536 0.1799 -0.3165 32 1 5.9915 1.1811 -1.8039 33 1 6.5609 -2.1506 -0.7574 34 1 7.6345 -1.0889 -1.6999 35 1 7.1222 -2.3893 -3.7482 36 1 6.0486 -3.4511 -2.8056 37 1 7.9628 -4.1224 -1.3801 38 1 9.0370 -3.0609 -2.3224 39 1 10.8988 -6.2311 -2.0714 40 1 3.7803 -1.6907 -2.9113 41 1 4.5202 -2.6512 -1.5978 42 1 1.7269 -0.4203 -2.0552 43 1 1.6022 -1.8587 -1.0038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309398742.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:22 Heat of formation + Delta-G solvation = -24.151547 kcal Electronic energy + Delta-G solvation = -18911.411709 eV Core-core repulsion = 16182.750115 eV Total energy + Delta-G solvation = -2728.661594 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.26986 -38.31704 -36.05976 -34.44977 -33.00250 -32.04550 -29.42828 -28.17324 -27.01124 -25.19782 -23.48574 -22.73453 -22.01043 -21.45187 -20.63273 -18.46996 -16.98072 -16.73234 -16.45159 -16.12575 -16.00141 -15.70852 -15.43944 -14.77985 -14.40645 -14.27201 -13.97965 -13.87587 -13.52437 -13.27818 -13.11143 -12.97729 -12.78755 -12.60038 -12.51674 -12.28973 -12.17770 -11.93267 -11.66704 -11.55595 -11.49538 -11.34298 -11.04739 -10.94774 -10.55501 -9.29231 -9.22075 -8.20352 -6.31623 1.39708 1.41532 1.52780 2.40894 2.85072 2.97324 3.12522 3.37846 3.69765 3.84316 4.11776 4.17892 4.23125 4.28728 4.36424 4.43318 4.51414 4.53675 4.59300 4.67289 4.68975 4.72700 4.76073 4.86933 4.91345 4.94515 4.99934 5.00935 5.02882 5.08217 5.15662 5.19437 5.25102 5.44139 5.51579 5.72844 5.85135 5.97487 6.07108 6.12021 6.19645 6.27490 6.84925 7.37587 8.91717 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.043251 B = 0.003576 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.222517 B = 7827.189841 C = 8197.181441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.573 5.573 3 C 0.065 3.935 4 C -0.100 4.100 5 C -0.095 4.095 6 H 0.080 0.920 7 C 0.048 3.952 8 N -0.537 5.537 9 C 0.064 3.936 10 C -0.087 4.087 11 C 0.026 3.974 12 C -0.543 4.543 13 H 0.058 0.942 14 C -0.002 4.002 15 N -0.934 5.934 16 Si 0.967 3.033 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.263 1.263 20 C 0.051 3.949 21 C -0.109 4.109 22 H 0.066 0.934 23 C 0.083 3.917 24 H 0.027 0.973 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.031 0.969 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.023 0.977 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.047 0.953 37 H -0.011 1.011 38 H -0.008 1.008 39 H 0.264 0.736 40 H 0.078 0.922 41 H 0.049 0.951 42 H 0.040 0.960 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.982 15.028 4.360 24.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.298 5.298 3 C -0.062 4.062 4 C -0.138 4.138 5 C -0.114 4.114 6 H 0.099 0.901 7 C -0.079 4.079 8 N -0.261 5.261 9 C -0.064 4.064 10 C -0.125 4.125 11 C -0.011 4.011 12 C -0.581 4.581 13 H 0.077 0.923 14 C -0.199 4.199 15 N -0.574 5.574 16 Si 0.791 3.209 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.187 1.187 20 C -0.077 4.077 21 C -0.128 4.128 22 H 0.085 0.915 23 C -0.045 4.045 24 H 0.046 0.954 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.104 0.896 28 H 0.050 0.950 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.042 0.958 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.008 0.992 38 H 0.010 0.990 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.618 14.893 4.328 24.231 hybrid contribution 0.309 -0.869 -0.280 0.963 sum -18.309 14.024 4.048 23.415 Atomic orbital electron populations 1.22317 0.85691 1.02739 1.00931 1.61031 1.08581 1.13493 1.46733 1.22008 0.94894 0.88152 1.01164 1.21426 0.94658 1.00784 0.96950 1.22022 0.94334 0.95531 0.99512 0.90121 1.22817 0.96567 0.92665 0.95819 1.64436 1.02186 1.06042 1.53439 1.22149 0.93508 0.94638 0.96115 1.21369 0.97834 0.95219 0.98085 1.18972 0.93143 0.93897 0.95130 1.21686 1.13767 1.13043 1.09631 0.92331 1.26005 0.95512 1.00658 0.97741 1.70097 1.18368 1.38161 1.30813 0.85424 0.78734 0.78083 0.78674 1.19679 1.20598 1.18743 1.22474 0.90166 0.96043 0.99025 1.21982 0.95517 0.96244 0.99105 0.91517 1.21635 0.93020 0.97750 0.92071 0.95437 0.91080 0.90432 0.89603 0.95032 0.91673 0.89302 0.93565 0.89536 0.95828 0.91525 0.93070 0.93457 0.99235 0.99001 0.92729 0.90353 0.93284 0.94204 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.61 127.69 1.23 1.65 16 2 N -0.57 -10.31 4.78 -923.09 -4.41 -14.72 16 3 C 0.07 1.01 5.43 86.72 0.47 1.48 16 4 C -0.10 -1.65 5.85 30.45 0.18 -1.47 16 5 C -0.09 -1.96 2.53 -10.30 -0.03 -1.98 16 6 H 0.08 1.68 8.05 -2.39 -0.02 1.66 16 7 C 0.05 1.20 6.33 85.85 0.54 1.74 16 8 N -0.54 -16.65 5.22 -886.69 -4.63 -21.28 16 9 C 0.06 2.37 4.58 86.30 0.39 2.76 16 10 C -0.09 -3.84 5.18 30.59 0.16 -3.68 16 11 C 0.03 1.44 4.97 29.85 0.15 1.59 16 12 C -0.54 -32.07 9.11 25.60 0.23 -31.84 16 13 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 14 C 0.00 -0.10 5.46 84.65 0.46 0.37 16 15 N -0.93 -58.13 13.29 21.45 0.28 -57.85 16 16 Si 0.97 45.23 29.54 68.60 2.03 47.26 16 17 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 19 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 20 C 0.05 1.43 5.99 85.68 0.51 1.94 16 21 C -0.11 -2.50 2.39 -10.66 -0.03 -2.52 16 22 H 0.07 1.73 7.98 -2.39 -0.02 1.71 16 23 C 0.08 1.62 5.34 85.58 0.46 2.08 16 24 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 25 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.08 0.88 8.13 -2.39 -0.02 0.87 16 27 H 0.09 1.12 8.13 -2.39 -0.02 1.10 16 28 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.06 1.20 8.02 -2.39 -0.02 1.18 16 30 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 1.17 7.85 -2.38 -0.02 1.15 16 32 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.02 0.89 8.02 -2.39 -0.02 0.87 16 34 H 0.07 2.46 8.08 -2.39 -0.02 2.44 16 35 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.05 2.05 7.05 -2.38 -0.02 2.03 16 37 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 38 H -0.01 -0.50 8.14 -2.38 -0.02 -0.51 16 39 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 40 H 0.08 2.11 8.10 -2.39 -0.02 2.09 16 41 H 0.05 1.53 6.83 -2.39 -0.02 1.51 16 42 H 0.04 0.76 8.06 -2.39 -0.02 0.74 16 43 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -65.40 330.52 -1.06 -66.46 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 0.93 Total: 8.00 kcal Atomic # 6 Polarization: -32.61 SS G_CDS: 4.74 Total: -27.88 kcal Atomic # 7 Polarization: -85.09 SS G_CDS: -8.75 Total: -93.84 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -65.40 -1.06 -66.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309398742.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.309 kcal (2) G-P(sol) polarization free energy of solvation -65.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds