Wall clock time and date at job start Mon Mar 30 2020 04:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46076 * 111.00571 * 2 1 4 4 C 1.53369 * 108.31805 * 187.34470 * 3 2 1 5 5 C 1.52638 * 107.85435 * 293.88221 * 4 3 2 6 6 H 1.08997 * 108.81218 * 292.65856 * 5 4 3 7 7 N 1.46904 * 108.88846 * 174.13170 * 5 4 3 8 8 C 1.46901 * 110.99631 * 82.07322 * 7 5 4 9 9 C 1.53006 * 109.46942 * 180.02562 * 8 7 5 10 10 C 1.50690 * 109.46951 * 180.02562 * 9 8 7 11 11 H 1.08006 * 120.00545 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99865 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00174 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 120.00131 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47292 * 59.99296 * 14 12 10 16 16 H 1.48494 * 109.47112 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46662 * 299.99617 * 14 12 10 18 18 C 1.50181 * 112.44585 * 53.37141 * 5 4 3 19 19 H 1.09005 * 106.49779 * 206.59789 * 18 5 4 20 20 C 1.53433 * 112.79926 * 90.67586 * 18 5 4 21 21 C 1.54294 * 104.19882 * 199.01084 * 20 18 5 22 22 C 1.53767 * 105.89049 * 28.55981 * 21 20 18 23 23 C 1.45537 * 111.00093 * 128.66936 * 2 1 3 24 24 H 1.08994 * 108.38592 * 315.31432 * 23 2 1 25 25 H 1.08997 * 109.47377 * 56.04132 * 1 2 3 26 26 H 1.09000 * 109.47802 * 176.04535 * 1 2 3 27 27 H 1.09006 * 109.46918 * 296.04206 * 1 2 3 28 28 H 1.08998 * 109.69401 * 67.63837 * 3 2 1 29 29 H 1.09004 * 109.69296 * 307.05533 * 3 2 1 30 30 H 1.09005 * 109.78397 * 174.29488 * 4 3 2 31 31 H 1.08995 * 109.78597 * 53.47838 * 4 3 2 32 32 H 1.00900 * 111.00139 * 318.12367 * 7 5 4 33 33 H 1.09001 * 109.47383 * 299.99876 * 8 7 5 34 34 H 1.09000 * 109.46946 * 60.00326 * 8 7 5 35 35 H 1.09001 * 109.46913 * 300.00081 * 9 8 7 36 36 H 1.08996 * 109.46907 * 59.99615 * 9 8 7 37 37 H 0.96996 * 119.99966 * 180.02562 * 13 12 10 38 38 H 1.08998 * 110.48018 * 80.33370 * 20 18 5 39 39 H 1.08999 * 110.48588 * 317.69169 * 20 18 5 40 40 H 1.08999 * 110.16727 * 269.45538 * 21 20 18 41 41 H 1.09002 * 110.16670 * 147.66305 * 21 20 18 42 42 H 1.08999 * 109.92550 * 102.11038 * 22 21 20 43 43 H 1.08994 * 109.92909 * 223.44007 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9926 1.3637 0.0000 4 6 3.5134 1.2960 -0.1861 5 6 4.1070 0.6275 1.0510 6 1 3.9684 1.2871 1.9076 7 7 5.5460 0.4232 0.8369 8 6 6.3007 1.6497 1.1270 9 6 7.7916 1.3985 0.8926 10 6 8.5659 2.6564 1.1908 11 1 8.0465 3.5463 1.5147 12 6 9.9373 2.6717 1.0491 13 7 10.5697 1.5884 0.6542 14 14 10.8971 4.2313 1.4180 15 1 10.6781 4.6243 2.8333 16 1 12.3441 3.9875 1.1906 17 1 10.4318 5.3219 0.5239 18 6 3.4670 -0.6979 1.3494 19 1 3.5747 -0.8592 2.4220 20 6 4.1850 -1.8713 0.6699 21 6 3.1433 -3.0094 0.6797 22 6 1.7682 -2.3218 0.6495 23 6 1.9905 -0.8489 1.0608 24 1 1.4272 -0.6463 1.9716 25 1 -0.3634 0.5740 -0.8523 26 1 -0.3635 -1.0252 -0.0709 27 1 -0.3633 0.4512 0.9234 28 1 1.7598 1.8465 0.9491 29 1 1.5469 1.9283 -0.8190 30 1 3.9174 2.3030 -0.2910 31 1 3.7508 0.7084 -1.0729 32 1 5.7296 0.0989 -0.1007 33 1 5.9598 2.4500 0.4702 34 1 6.1394 1.9384 2.1656 35 1 8.1328 0.5980 1.5491 36 1 7.9525 1.1099 -0.1461 37 1 11.5345 1.5990 0.5549 38 1 5.0692 -2.1585 1.2390 39 1 4.4565 -1.6115 -0.3533 40 1 3.2458 -3.6049 1.5869 41 1 3.2674 -3.6401 -0.2006 42 1 1.3520 -2.3677 -0.3568 43 1 1.0946 -2.8071 1.3557 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309597396.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:29 Heat of formation + Delta-G solvation = -12.078878 kcal Electronic energy + Delta-G solvation = -19374.410330 eV Core-core repulsion = 16646.272246 eV Total energy + Delta-G solvation = -2728.138084 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.21828 -36.24409 -35.45173 -33.33974 -31.59215 -29.21237 -28.35820 -27.87346 -25.61147 -23.88156 -22.25918 -22.07268 -20.74631 -19.93328 -18.27337 -16.42890 -16.26082 -15.48456 -15.31982 -14.67871 -14.45200 -14.39345 -14.08616 -13.94911 -13.29749 -12.63150 -12.46081 -12.38339 -12.25507 -11.98282 -11.71279 -11.33476 -11.11471 -11.05430 -10.93469 -10.82744 -10.73937 -10.62142 -10.46598 -10.33424 -10.06228 -9.86034 -9.31265 -9.12071 -8.32627 -8.24199 -7.69014 -5.97315 -3.99818 3.34690 3.39059 3.41370 3.81795 4.41424 4.53625 4.60500 4.80021 4.96851 5.05471 5.15579 5.25969 5.30841 5.36601 5.38528 5.46042 5.54591 5.62465 5.68596 5.69624 5.75688 5.84691 5.95966 5.98099 6.06500 6.11822 6.15079 6.23345 6.40403 6.42125 6.52146 6.56260 6.61414 7.02395 7.07349 7.23867 7.55109 7.77256 7.86979 8.01633 8.12645 8.46798 9.07386 9.63755 11.14070 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.037679 B = 0.004256 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.933565 B = 6577.878724 C = 7127.660269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.552 5.552 3 C 0.069 3.931 4 C -0.146 4.146 5 C 0.100 3.900 6 H 0.066 0.934 7 N -0.684 5.684 8 C 0.066 3.934 9 C 0.026 3.974 10 C -0.522 4.522 11 H 0.053 0.947 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.892 3.108 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.072 4.072 19 H 0.061 0.939 20 C -0.095 4.095 21 C -0.125 4.125 22 C -0.115 4.115 23 C 0.104 3.896 24 H 0.032 0.968 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.021 0.979 28 H 0.029 0.971 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.338 0.662 33 H 0.015 0.985 34 H 0.055 0.945 35 H 0.024 0.976 36 H 0.013 0.987 37 H 0.261 0.739 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.825 -5.825 -1.047 20.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.277 5.277 3 C -0.059 4.059 4 C -0.185 4.185 5 C -0.011 4.011 6 H 0.085 0.915 7 N -0.313 5.313 8 C -0.063 4.063 9 C -0.011 4.011 10 C -0.561 4.561 11 H 0.071 0.929 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.720 3.280 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.092 4.092 19 H 0.079 0.921 20 C -0.133 4.133 21 C -0.163 4.163 22 C -0.153 4.153 23 C -0.005 4.005 24 H 0.050 0.950 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.039 0.961 28 H 0.047 0.953 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.156 0.844 33 H 0.033 0.967 34 H 0.074 0.926 35 H 0.043 0.957 36 H 0.031 0.969 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.359 -6.362 -0.825 20.394 hybrid contribution 0.049 1.831 0.215 1.844 sum -19.310 -4.531 -0.610 19.844 Atomic orbital electron populations 1.22309 0.87350 1.01947 1.00091 1.60199 1.06765 1.12517 1.48189 1.21855 0.95732 0.88430 0.99857 1.22340 0.94575 1.01537 1.00057 1.20746 0.89152 0.94504 0.96682 0.91545 1.60766 1.04508 1.33520 1.32533 1.22175 0.96707 0.88395 0.98977 1.19050 0.87828 0.97131 0.97119 1.21146 0.91917 0.97464 1.45532 0.92901 1.24994 0.97848 0.96148 0.95306 1.69962 1.08645 1.27580 1.47074 0.86665 0.78877 0.83647 0.78829 1.20261 1.21269 1.20311 1.20448 0.92028 0.95778 1.00906 0.92096 1.21883 0.97557 0.92856 1.01004 1.22138 0.94774 0.98131 1.01257 1.22350 0.97575 0.93729 1.01691 1.21378 0.95021 0.93065 0.91020 0.95042 0.91619 0.91516 0.96094 0.95263 0.91008 0.91278 0.90770 0.84386 0.96691 0.92643 0.95727 0.96856 0.92960 0.90560 0.91897 0.92276 0.91952 0.90750 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.29 60.06 0.56 0.84 16 2 N -0.55 -6.32 4.23 -236.55 -1.00 -7.32 16 3 C 0.07 0.82 5.52 -4.08 -0.02 0.79 16 4 C -0.15 -1.96 5.39 -26.73 -0.14 -2.11 16 5 C 0.10 1.48 2.37 -69.30 -0.16 1.31 16 6 H 0.07 1.04 7.78 -51.93 -0.40 0.64 16 7 N -0.68 -12.08 5.26 -108.41 -0.57 -12.65 16 8 C 0.07 1.39 5.40 -3.82 -0.02 1.36 16 9 C 0.03 0.69 5.23 -27.88 -0.15 0.54 16 10 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 11 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -27.13 13.29 55.43 0.74 -26.39 16 14 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 C -0.07 -0.96 2.39 -92.71 -0.22 -1.18 16 19 H 0.06 0.85 8.07 -51.93 -0.42 0.43 16 20 C -0.10 -1.24 5.22 -25.83 -0.13 -1.38 16 21 C -0.13 -1.36 6.80 -25.65 -0.17 -1.54 16 22 C -0.12 -1.20 5.80 -25.53 -0.15 -1.35 16 23 C 0.10 1.22 2.69 -68.56 -0.18 1.03 16 24 H 0.03 0.37 7.94 -51.93 -0.41 -0.04 16 25 H 0.06 0.54 8.08 -51.93 -0.42 0.13 16 26 H 0.07 0.56 7.09 -51.93 -0.37 0.19 16 27 H 0.02 0.19 8.13 -51.93 -0.42 -0.24 16 28 H 0.03 0.35 8.13 -51.93 -0.42 -0.07 16 29 H 0.07 0.76 8.07 -51.93 -0.42 0.35 16 30 H 0.07 0.97 7.42 -51.93 -0.39 0.59 16 31 H 0.07 1.04 8.03 -51.93 -0.42 0.63 16 32 H 0.34 5.90 7.55 -39.29 -0.30 5.61 16 33 H 0.01 0.31 7.33 -51.93 -0.38 -0.07 16 34 H 0.06 1.19 8.04 -51.93 -0.42 0.77 16 35 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 0.86 7.48 -51.93 -0.39 0.47 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.79 7.37 -51.93 -0.38 0.40 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 325.74 15.07 4.91 4.91 Total: -1.00 -29.48 325.74 -10.19 -39.67 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -8.03 Total: 0.29 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -1.21 Total: -15.32 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: -0.84 Total: -46.36 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.48 -10.19 -39.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309597396.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.591 kcal (2) G-P(sol) polarization free energy of solvation -29.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds