Wall clock time and date at job start Mon Mar 30 2020 04:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46687 * 110.99886 * 2 1 4 4 C 1.53279 * 108.45147 * 186.37332 * 3 2 1 5 5 C 1.52809 * 108.50011 * 297.55563 * 4 3 2 6 6 H 1.08998 * 109.18771 * 299.49833 * 5 4 3 7 7 N 1.46904 * 109.32864 * 179.97438 * 5 4 3 8 8 C 1.46890 * 110.99897 * 84.12392 * 7 5 4 9 9 C 1.53007 * 109.47124 * 180.02562 * 8 7 5 10 10 C 1.50704 * 109.47121 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99710 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99565 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00270 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99582 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46984 * 60.00846 * 14 12 10 16 16 H 1.48500 * 109.46824 * 180.02562 * 14 12 10 17 17 H 1.48491 * 109.47593 * 300.00440 * 14 12 10 18 18 C 1.53126 * 110.32810 * 59.67435 * 5 4 3 19 19 H 1.09000 * 112.12063 * 73.51008 * 18 5 4 20 20 C 1.55627 * 106.77130 * 197.68182 * 18 5 4 21 21 C 1.54410 * 103.94243 * 76.82554 * 20 18 5 22 22 C 1.54176 * 106.48438 * 24.14293 * 21 20 18 23 23 C 1.44961 * 110.99907 * 126.85324 * 2 1 3 24 24 H 1.09005 * 108.99167 * 58.29024 * 23 2 1 25 25 H 1.09002 * 109.47307 * 63.94941 * 1 2 3 26 26 H 1.08997 * 109.46833 * 183.95169 * 1 2 3 27 27 H 1.08996 * 109.46890 * 303.94813 * 1 2 3 28 28 H 1.09002 * 109.63681 * 66.68904 * 3 2 1 29 29 H 1.08998 * 109.64379 * 306.06374 * 3 2 1 30 30 H 1.08997 * 109.62851 * 177.85800 * 4 3 2 31 31 H 1.08994 * 109.79717 * 57.35940 * 4 3 2 32 32 H 1.00895 * 111.00219 * 208.08691 * 7 5 4 33 33 H 1.08995 * 109.47604 * 300.00090 * 8 7 5 34 34 H 1.08999 * 109.47070 * 60.00722 * 8 7 5 35 35 H 1.08995 * 109.46945 * 300.00484 * 9 8 7 36 36 H 1.08999 * 109.46565 * 60.00403 * 9 8 7 37 37 H 0.97002 * 119.99837 * 179.97438 * 13 12 10 38 38 H 1.09005 * 110.53605 * 195.44495 * 20 18 5 39 39 H 1.09001 * 110.53218 * 318.21236 * 20 18 5 40 40 H 1.09001 * 110.05394 * 264.88243 * 21 20 18 41 41 H 1.08998 * 110.09805 * 143.41719 * 21 20 18 42 42 H 1.09006 * 110.14045 * 241.08519 * 22 21 20 43 43 H 1.08999 * 110.14520 * 119.35618 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9947 1.3694 0.0000 4 6 3.5176 1.3045 -0.1614 5 6 4.1015 0.5637 1.0408 6 1 3.8518 1.1069 1.9522 7 7 5.5623 0.4904 0.9042 8 6 6.1998 1.7161 1.4030 9 6 7.7173 1.6028 1.2439 10 6 8.3714 2.8601 1.7563 11 1 7.7654 3.6598 2.1559 12 6 9.7435 2.9890 1.7159 13 7 10.4815 2.0149 1.2298 14 14 10.5542 4.5477 2.3504 15 1 10.2189 4.7313 3.7853 16 1 12.0271 4.4376 2.1960 17 1 10.0614 5.7135 1.5738 18 6 3.5276 -0.8537 1.1222 19 1 3.9424 -1.5091 0.3564 20 6 3.7958 -1.3644 2.5676 21 6 2.7279 -0.6457 3.4204 22 6 1.5719 -0.2895 2.4646 23 6 1.9885 -0.8117 1.0829 24 1 1.6099 -1.8284 0.9773 25 1 -0.3634 0.4513 -0.9233 26 1 -0.3633 -1.0252 0.0708 27 1 -0.3633 0.5739 0.8525 28 1 1.7467 1.8570 0.9428 29 1 1.5618 1.9281 -0.8298 30 1 3.9249 2.3147 -0.2020 31 1 3.7693 0.7711 -1.0779 32 1 5.9289 -0.3245 1.3729 33 1 5.8380 2.5718 0.8330 34 1 5.9537 1.8508 2.4563 35 1 8.0795 0.7471 1.8137 36 1 7.9631 1.4683 0.1905 37 1 11.4468 2.1058 1.2010 38 1 3.6646 -2.4452 2.6217 39 1 4.7975 -1.0832 2.8927 40 1 3.1461 0.2618 3.8559 41 1 2.3703 -1.3079 4.2089 42 1 1.4321 0.7911 2.4309 43 1 0.6528 -0.7775 2.7888 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309597399.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:32 Heat of formation + Delta-G solvation = -14.546096 kcal Electronic energy + Delta-G solvation = -19518.301035 eV Core-core repulsion = 16790.055965 eV Total energy + Delta-G solvation = -2728.245070 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.50774 -36.13304 -35.25275 -33.19997 -31.51437 -29.31040 -28.26405 -27.89821 -25.56310 -23.94825 -22.61916 -21.85285 -20.43018 -19.96990 -18.44079 -16.53751 -16.13891 -15.76036 -15.37180 -14.86804 -14.46091 -14.25313 -14.04031 -13.45483 -13.22270 -13.03483 -12.63016 -12.40067 -12.12585 -12.05934 -11.66723 -11.40235 -11.24991 -11.17827 -11.11064 -10.91531 -10.80107 -10.67691 -10.51358 -10.28480 -10.01148 -9.82931 -9.28664 -9.11146 -8.32438 -8.27956 -7.72819 -5.97106 -3.99636 3.34750 3.39087 3.41440 3.83743 4.41629 4.49922 4.55494 4.70452 4.80520 5.05801 5.13317 5.19147 5.27180 5.33157 5.38665 5.41624 5.46237 5.52094 5.57983 5.66327 5.70830 5.79191 5.83893 5.87402 5.95133 6.05411 6.12193 6.17384 6.29240 6.34745 6.38726 6.46276 6.65616 7.03547 7.06621 7.16502 7.56966 7.77687 7.87850 8.03266 8.13564 8.47101 9.07527 9.63903 11.14280 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.035798 B = 0.004362 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.971066 B = 6417.730810 C = 6680.840699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.539 5.539 3 C 0.058 3.942 4 C -0.105 4.105 5 C 0.094 3.906 6 H 0.037 0.963 7 N -0.686 5.686 8 C 0.068 3.932 9 C 0.026 3.974 10 C -0.522 4.522 11 H 0.053 0.947 12 C 0.058 3.942 13 N -0.893 5.893 14 Si 0.892 3.108 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.082 4.082 19 H 0.095 0.905 20 C -0.127 4.127 21 C -0.120 4.120 22 C -0.156 4.156 23 C 0.096 3.904 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.024 0.976 28 H 0.033 0.967 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.335 0.665 33 H 0.057 0.943 34 H 0.012 0.988 35 H 0.012 0.988 36 H 0.025 0.975 37 H 0.261 0.739 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.860 -6.118 0.734 20.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.262 5.262 3 C -0.070 4.070 4 C -0.144 4.144 5 C -0.016 4.016 6 H 0.054 0.946 7 N -0.318 5.318 8 C -0.061 4.061 9 C -0.012 4.012 10 C -0.561 4.561 11 H 0.071 0.929 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.720 3.280 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.101 4.101 19 H 0.113 0.887 20 C -0.165 4.165 21 C -0.158 4.158 22 C -0.196 4.196 23 C -0.014 4.014 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.042 0.958 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.154 0.846 33 H 0.075 0.925 34 H 0.030 0.970 35 H 0.031 0.969 36 H 0.044 0.956 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.518 -6.156 -0.380 20.469 hybrid contribution 0.124 1.169 2.159 2.459 sum -19.393 -4.987 1.780 20.103 Atomic orbital electron populations 1.22298 0.87511 1.01583 1.00596 1.60871 1.07048 1.13554 1.44689 1.22139 0.96308 0.88483 1.00028 1.21582 0.92313 1.00913 0.99580 1.21474 0.89237 0.94342 0.96582 0.94556 1.60626 1.02440 1.06109 1.62584 1.22169 0.98109 0.90437 0.95345 1.19059 0.87547 0.96696 0.97859 1.21145 0.91669 1.02186 1.41053 0.92911 1.24993 0.97481 0.96389 0.95426 1.69964 1.05352 1.32065 1.45871 0.86664 0.78242 0.83768 0.79345 1.20338 1.21260 1.20232 1.22304 0.93688 0.97248 0.96872 0.88690 1.22661 0.99180 0.99894 0.94764 1.22111 0.95599 1.00364 0.97688 1.22697 0.98496 1.01365 0.97014 1.21717 0.95030 0.96984 0.87657 0.90405 0.91527 0.91714 0.95753 0.94918 0.90743 0.91421 0.90373 0.84635 0.92481 0.97002 0.96920 0.95642 0.92957 0.91445 0.91128 0.91932 0.92020 0.91852 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.20 60.07 0.55 0.81 16 2 N -0.54 -6.16 4.74 -235.45 -1.12 -7.27 16 3 C 0.06 0.70 5.33 -3.80 -0.02 0.68 16 4 C -0.11 -1.52 5.59 -26.68 -0.15 -1.66 16 5 C 0.09 1.40 1.59 -67.74 -0.11 1.29 16 6 H 0.04 0.58 6.34 -51.93 -0.33 0.25 16 7 N -0.69 -12.42 6.30 -106.76 -0.67 -13.09 16 8 C 0.07 1.45 5.41 -3.83 -0.02 1.43 16 9 C 0.03 0.68 5.23 -27.88 -0.15 0.54 16 10 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 11 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 14 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 18 C -0.08 -1.04 3.08 -88.63 -0.27 -1.31 16 19 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 20 C -0.13 -1.47 6.07 -24.59 -0.15 -1.62 16 21 C -0.12 -1.30 6.11 -25.38 -0.16 -1.46 16 22 C -0.16 -1.64 4.96 -25.87 -0.13 -1.77 16 23 C 0.10 1.07 2.43 -67.98 -0.17 0.91 16 24 H 0.08 0.83 8.05 -51.93 -0.42 0.41 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.53 8.00 -51.93 -0.42 0.11 16 27 H 0.02 0.21 7.66 -51.93 -0.40 -0.19 16 28 H 0.03 0.40 6.44 -51.93 -0.33 0.06 16 29 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 30 H 0.07 1.03 7.40 -51.93 -0.38 0.65 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.34 5.90 7.18 -39.29 -0.28 5.62 16 33 H 0.06 1.24 7.37 -51.93 -0.38 0.85 16 34 H 0.01 0.25 8.05 -51.93 -0.42 -0.17 16 35 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.91 6.96 -51.93 -0.36 0.55 16 40 H 0.06 0.75 7.77 -51.93 -0.40 0.34 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.72 6.25 -51.93 -0.32 0.40 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 321.56 15.07 4.85 4.85 Total: -1.00 -29.84 321.56 -10.20 -40.03 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -7.80 Total: 0.97 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: -1.17 Total: -15.88 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: -1.05 Total: -46.82 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.84 -10.20 -40.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309597399.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.487 kcal (2) G-P(sol) polarization free energy of solvation -29.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds