Wall clock time and date at job start Mon Mar 30 2020 04:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47691 * 110.99897 * 2 1 4 4 C 1.52586 * 111.67534 * 178.79412 * 3 2 1 5 5 C 1.53842 * 111.31092 * 53.67808 * 4 3 2 6 6 H 1.09001 * 109.97054 * 184.99041 * 5 4 3 7 7 N 1.46898 * 109.96688 * 63.77159 * 5 4 3 8 8 C 1.46896 * 110.99883 * 86.22800 * 7 5 4 9 9 C 1.53002 * 109.47246 * 179.97438 * 8 7 5 10 10 C 1.50706 * 109.46931 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00193 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99398 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99350 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47326 * 270.00340 * 14 12 10 16 16 H 1.48506 * 109.46545 * 30.00090 * 14 12 10 17 17 H 1.48498 * 109.47210 * 149.99801 * 14 12 10 18 18 C 1.51987 * 106.97587 * 304.38071 * 5 4 3 19 19 H 1.09002 * 110.53894 * 302.09634 * 18 5 4 20 20 C 1.52858 * 115.02059 * 174.26124 * 18 5 4 21 21 C 1.55283 * 102.60195 * 202.95952 * 20 18 5 22 22 C 1.54899 * 106.37247 * 24.47211 * 21 20 18 23 23 C 1.45270 * 111.00195 * 238.95369 * 2 1 3 24 24 H 1.08995 * 109.61053 * 69.71781 * 23 2 1 25 25 H 1.08998 * 109.46925 * 56.04656 * 1 2 3 26 26 H 1.08997 * 109.46848 * 176.05308 * 1 2 3 27 27 H 1.08998 * 109.46815 * 296.05241 * 1 2 3 28 28 H 1.08998 * 109.04187 * 58.22378 * 3 2 1 29 29 H 1.08999 * 109.03806 * 299.35375 * 3 2 1 30 30 H 1.08996 * 109.11091 * 293.20673 * 4 3 2 31 31 H 1.08994 * 109.11541 * 174.14882 * 4 3 2 32 32 H 1.00904 * 110.99913 * 210.17863 * 7 5 4 33 33 H 1.09004 * 109.47535 * 59.99892 * 8 7 5 34 34 H 1.09004 * 109.47041 * 299.99931 * 8 7 5 35 35 H 1.09000 * 109.46986 * 60.00111 * 9 8 7 36 36 H 1.08993 * 109.47662 * 299.99888 * 9 8 7 37 37 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 38 38 H 1.08999 * 110.46920 * 84.90432 * 20 18 5 39 39 H 1.09003 * 111.46783 * 321.47203 * 20 18 5 40 40 H 1.09005 * 110.07423 * 265.24694 * 21 20 18 41 41 H 1.09000 * 110.12329 * 143.73147 * 21 20 18 42 42 H 1.09004 * 110.27308 * 244.37912 * 22 21 20 43 43 H 1.09008 * 110.34764 * 122.35898 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9983 1.3788 0.0000 4 6 3.5237 1.3970 0.0298 5 6 4.1153 0.5460 -1.1071 6 1 5.2004 0.5020 -1.0133 7 7 3.7477 1.1214 -2.4078 8 6 4.7053 2.1585 -2.8142 9 6 4.2905 2.7325 -4.1705 10 6 5.2726 3.7969 -4.5871 11 1 6.1092 4.0395 -3.9486 12 6 5.1030 4.4611 -5.7834 13 7 5.9603 5.3896 -6.1472 14 14 3.6556 4.0420 -6.8875 15 1 4.0470 2.9616 -7.8280 16 1 2.5143 3.5842 -6.0549 17 1 3.2549 5.2472 -7.6570 18 6 3.5256 -0.8481 -0.9710 19 1 3.7526 -1.2653 0.0101 20 6 3.8868 -1.8157 -2.0979 21 6 2.7374 -2.8577 -2.0312 22 6 1.5336 -2.1383 -1.3733 23 6 1.9897 -0.6994 -1.1619 24 1 1.7885 -0.1162 -2.0605 25 1 -0.3633 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0707 27 1 -0.3633 0.4513 0.9232 28 1 1.6192 1.9053 0.8759 29 1 1.6541 1.8918 -0.8981 30 1 3.8666 1.0025 0.9863 31 1 3.8706 2.4248 -0.0761 32 1 3.6718 0.4032 -3.1124 33 1 5.7011 1.7226 -2.8938 34 1 4.7158 2.9550 -2.0701 35 1 3.2946 3.1684 -4.0913 36 1 4.2802 1.9359 -4.9144 37 1 5.8412 5.8566 -6.9890 38 1 4.8484 -2.2893 -1.9001 39 1 3.8973 -1.3147 -3.0659 40 1 3.0406 -3.7109 -1.4244 41 1 2.4724 -3.1885 -3.0354 42 1 1.2929 -2.6025 -0.4168 43 1 0.6675 -2.1666 -2.0346 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309597401.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:36 Heat of formation + Delta-G solvation = -7.572302 kcal Electronic energy + Delta-G solvation = -19716.283269 eV Core-core repulsion = 16988.340606 eV Total energy + Delta-G solvation = -2727.942664 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.35728 -35.93853 -35.57248 -33.28795 -31.72441 -29.34047 -28.24393 -27.96551 -25.93482 -23.88632 -22.50429 -21.28305 -20.40251 -19.84608 -18.87045 -16.71492 -16.16232 -15.80818 -15.13891 -14.65762 -14.52132 -14.16993 -14.02399 -13.56287 -13.20997 -13.06677 -12.66771 -12.53366 -12.47055 -12.26198 -11.63155 -11.46275 -11.19477 -11.10441 -11.04048 -10.99004 -10.68239 -10.55074 -10.29402 -10.19732 -9.91610 -9.79720 -9.62318 -9.22080 -8.53774 -8.32860 -7.80985 -6.04455 -4.02547 3.31131 3.38721 3.44416 3.98685 4.38831 4.45929 4.61957 4.71097 4.85256 5.15506 5.23104 5.24452 5.30101 5.31113 5.43250 5.51960 5.52919 5.59120 5.63762 5.65602 5.82820 5.83937 5.90126 5.95961 6.01922 6.12142 6.13126 6.19889 6.23689 6.25910 6.31682 6.35076 6.48313 6.79896 7.12725 7.16856 7.25485 7.38902 7.64921 7.78151 7.93822 8.53654 9.00005 9.58172 11.08988 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.025106 B = 0.005304 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.987258 B = 5277.823926 C = 5419.874030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.524 5.524 3 C 0.061 3.939 4 C -0.101 4.101 5 C 0.090 3.910 6 H 0.044 0.956 7 N -0.688 5.688 8 C 0.074 3.926 9 C -0.009 4.009 10 C -0.520 4.520 11 H 0.071 0.929 12 C 0.067 3.933 13 N -0.904 5.904 14 Si 0.881 3.119 15 H -0.278 1.278 16 H -0.264 1.264 17 H -0.288 1.288 18 C -0.090 4.090 19 H 0.086 0.914 20 C -0.123 4.123 21 C -0.118 4.118 22 C -0.116 4.116 23 C 0.072 3.928 24 H 0.063 0.937 25 H 0.025 0.975 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.334 0.666 33 H 0.021 0.979 34 H 0.063 0.937 35 H 0.023 0.977 36 H 0.007 0.993 37 H 0.263 0.737 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.113 -15.277 11.849 21.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.248 5.248 3 C -0.066 4.066 4 C -0.140 4.140 5 C -0.020 4.020 6 H 0.062 0.938 7 N -0.322 5.322 8 C -0.054 4.054 9 C -0.047 4.047 10 C -0.559 4.559 11 H 0.089 0.911 12 C -0.134 4.134 13 N -0.543 5.543 14 Si 0.708 3.292 15 H -0.204 1.204 16 H -0.189 1.189 17 H -0.214 1.214 18 C -0.109 4.109 19 H 0.105 0.895 20 C -0.162 4.162 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.037 4.037 24 H 0.080 0.920 25 H 0.044 0.956 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.154 0.846 33 H 0.039 0.961 34 H 0.082 0.918 35 H 0.042 0.958 36 H 0.025 0.975 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.370 -14.929 12.427 21.566 hybrid contribution -0.187 -0.149 -1.677 1.694 sum -9.556 -15.078 10.749 20.838 Atomic orbital electron populations 1.22358 0.88294 1.01474 1.00599 1.62477 1.07140 1.14922 1.40250 1.22011 0.95411 0.88366 1.00831 1.21546 0.94619 1.00480 0.97349 1.21367 0.96977 0.92684 0.91022 0.93812 1.60715 1.51743 1.16245 1.03455 1.21976 0.91633 0.92937 0.98822 1.19534 0.97634 0.95868 0.91629 1.21080 1.10961 1.18623 1.05201 0.91126 1.25004 0.96086 0.94644 0.97658 1.69919 1.36526 1.24934 1.22935 0.86759 0.83798 0.77843 0.80795 1.20416 1.18861 1.21429 1.22040 0.95340 0.94362 0.99159 0.89535 1.22151 0.98220 0.96866 0.98915 1.22407 0.94816 0.97874 1.00477 1.21938 0.97691 0.95155 1.00597 1.22111 0.94588 0.94311 0.92722 0.91955 0.95635 0.91680 0.91817 0.91760 0.93363 0.91998 0.91253 0.84582 0.96106 0.91807 0.95848 0.97486 0.92749 0.91558 0.91091 0.91848 0.91904 0.91308 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.46 60.07 0.57 0.80 16 2 N -0.52 -6.49 5.00 -234.50 -1.17 -7.66 16 3 C 0.06 0.81 5.18 -3.60 -0.02 0.79 16 4 C -0.10 -1.37 5.61 -26.51 -0.15 -1.52 16 5 C 0.09 1.27 2.64 -67.79 -0.18 1.09 16 6 H 0.04 0.64 7.83 -51.93 -0.41 0.24 16 7 N -0.69 -11.42 4.89 -106.81 -0.52 -11.94 16 8 C 0.07 1.50 5.44 -3.83 -0.02 1.48 16 9 C -0.01 -0.21 4.30 -27.88 -0.12 -0.33 16 10 C -0.52 -14.99 9.66 -34.44 -0.33 -15.32 16 11 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 12 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 13 N -0.90 -28.15 13.96 55.43 0.77 -27.37 16 14 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 18 C -0.09 -1.10 2.42 -89.88 -0.22 -1.31 16 19 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 20 C -0.12 -1.37 6.26 -25.59 -0.16 -1.53 16 21 C -0.12 -1.14 6.86 -24.52 -0.17 -1.31 16 22 C -0.12 -1.20 5.49 -26.03 -0.14 -1.34 16 23 C 0.07 0.89 1.79 -67.57 -0.12 0.76 16 24 H 0.06 0.91 6.72 -51.93 -0.35 0.56 16 25 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.62 7.16 -51.93 -0.37 0.25 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.74 7.97 -51.93 -0.41 0.33 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.00 7.51 -51.93 -0.39 0.61 16 32 H 0.33 5.38 5.99 -39.29 -0.24 5.15 16 33 H 0.02 0.42 8.07 -51.93 -0.42 0.01 16 34 H 0.06 1.32 7.51 -51.93 -0.39 0.93 16 35 H 0.02 0.58 7.20 -51.93 -0.37 0.21 16 36 H 0.01 0.16 7.57 -51.93 -0.39 -0.23 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.85 6.13 -51.93 -0.32 0.54 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.70 8.06 -51.93 -0.42 0.28 16 43 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 LS Contribution 319.94 15.07 4.82 4.82 Total: -1.00 -30.02 319.94 -9.80 -39.81 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -7.87 Total: 0.82 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: -1.16 Total: -15.87 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: -0.92 Total: -46.98 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.02 -9.80 -39.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309597401.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.241 kcal (2) G-P(sol) polarization free energy of solvation -30.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds