Wall clock time and date at job start Mon Mar 30 2020 04:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47691 * 110.99897 * 2 1 4 4 C 1.52586 * 111.67534 * 178.79412 * 3 2 1 5 5 C 1.53842 * 111.31092 * 53.67808 * 4 3 2 6 6 H 1.09001 * 109.97054 * 184.99041 * 5 4 3 7 7 N 1.46898 * 109.96688 * 63.77159 * 5 4 3 8 8 C 1.46896 * 110.99883 * 86.22800 * 7 5 4 9 9 C 1.53002 * 109.47246 * 179.97438 * 8 7 5 10 10 C 1.50706 * 109.46931 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00193 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99398 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99350 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47326 * 270.00340 * 14 12 10 16 16 H 1.48506 * 109.46545 * 30.00090 * 14 12 10 17 17 H 1.48498 * 109.47210 * 149.99801 * 14 12 10 18 18 C 1.51987 * 106.97587 * 304.38071 * 5 4 3 19 19 H 1.09002 * 110.53894 * 302.09634 * 18 5 4 20 20 C 1.52858 * 115.02059 * 174.26124 * 18 5 4 21 21 C 1.55283 * 102.60195 * 202.95952 * 20 18 5 22 22 C 1.54899 * 106.37247 * 24.47211 * 21 20 18 23 23 C 1.45270 * 111.00195 * 238.95369 * 2 1 3 24 24 H 1.08995 * 109.61053 * 69.71781 * 23 2 1 25 25 H 1.08998 * 109.46925 * 56.04656 * 1 2 3 26 26 H 1.08997 * 109.46848 * 176.05308 * 1 2 3 27 27 H 1.08998 * 109.46815 * 296.05241 * 1 2 3 28 28 H 1.08998 * 109.04187 * 58.22378 * 3 2 1 29 29 H 1.08999 * 109.03806 * 299.35375 * 3 2 1 30 30 H 1.08996 * 109.11091 * 293.20673 * 4 3 2 31 31 H 1.08994 * 109.11541 * 174.14882 * 4 3 2 32 32 H 1.00904 * 110.99913 * 210.17863 * 7 5 4 33 33 H 1.09004 * 109.47535 * 59.99892 * 8 7 5 34 34 H 1.09004 * 109.47041 * 299.99931 * 8 7 5 35 35 H 1.09000 * 109.46986 * 60.00111 * 9 8 7 36 36 H 1.08993 * 109.47662 * 299.99888 * 9 8 7 37 37 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 38 38 H 1.08999 * 110.46920 * 84.90432 * 20 18 5 39 39 H 1.09003 * 111.46783 * 321.47203 * 20 18 5 40 40 H 1.09005 * 110.07423 * 265.24694 * 21 20 18 41 41 H 1.09000 * 110.12329 * 143.73147 * 21 20 18 42 42 H 1.09004 * 110.27308 * 244.37912 * 22 21 20 43 43 H 1.09008 * 110.34764 * 122.35898 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9983 1.3788 0.0000 4 6 3.5237 1.3970 0.0298 5 6 4.1153 0.5460 -1.1071 6 1 5.2004 0.5020 -1.0133 7 7 3.7477 1.1214 -2.4078 8 6 4.7053 2.1585 -2.8142 9 6 4.2905 2.7325 -4.1705 10 6 5.2726 3.7969 -4.5871 11 1 6.1092 4.0395 -3.9486 12 6 5.1030 4.4611 -5.7834 13 7 5.9603 5.3896 -6.1472 14 14 3.6556 4.0420 -6.8875 15 1 4.0470 2.9616 -7.8280 16 1 2.5143 3.5842 -6.0549 17 1 3.2549 5.2472 -7.6570 18 6 3.5256 -0.8481 -0.9710 19 1 3.7526 -1.2653 0.0101 20 6 3.8868 -1.8157 -2.0979 21 6 2.7374 -2.8577 -2.0312 22 6 1.5336 -2.1383 -1.3733 23 6 1.9897 -0.6994 -1.1619 24 1 1.7885 -0.1162 -2.0605 25 1 -0.3633 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0707 27 1 -0.3633 0.4513 0.9232 28 1 1.6192 1.9053 0.8759 29 1 1.6541 1.8918 -0.8981 30 1 3.8666 1.0025 0.9863 31 1 3.8706 2.4248 -0.0761 32 1 3.6718 0.4032 -3.1124 33 1 5.7011 1.7226 -2.8938 34 1 4.7158 2.9550 -2.0701 35 1 3.2946 3.1684 -4.0913 36 1 4.2802 1.9359 -4.9144 37 1 5.8412 5.8566 -6.9890 38 1 4.8484 -2.2893 -1.9001 39 1 3.8973 -1.3147 -3.0659 40 1 3.0406 -3.7109 -1.4244 41 1 2.4724 -3.1885 -3.0354 42 1 1.2929 -2.6025 -0.4168 43 1 0.6675 -2.1666 -2.0346 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309597401.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:34 Heat of formation + Delta-G solvation = -27.333310 kcal Electronic energy + Delta-G solvation = -19717.140171 eV Core-core repulsion = 16988.340606 eV Total energy + Delta-G solvation = -2728.799565 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.37310 -37.32287 -36.48706 -35.18804 -33.40777 -30.87628 -29.38815 -28.85102 -27.01791 -25.69561 -23.48446 -22.48232 -22.08421 -20.74438 -20.02071 -18.88633 -17.35612 -16.77190 -16.31822 -16.27971 -15.72469 -15.63315 -15.13029 -14.89111 -14.62404 -14.29456 -14.20763 -13.74481 -13.53898 -13.37550 -13.28848 -12.92411 -12.56248 -12.26458 -12.07361 -11.99986 -11.93933 -11.81219 -11.68463 -11.50273 -11.46516 -11.30796 -11.20711 -10.91823 -10.78922 -9.46757 -9.07603 -8.32226 -6.36648 1.33355 1.36023 1.48797 2.34111 3.02439 3.03365 3.26963 3.56225 3.71254 3.93121 4.10824 4.25724 4.34344 4.36928 4.46013 4.49661 4.55110 4.57165 4.65744 4.67442 4.71163 4.73616 4.89584 4.92110 4.95932 5.02722 5.04315 5.11983 5.12397 5.21690 5.22405 5.25267 5.30829 5.44271 5.46410 5.50062 5.63039 6.13513 6.18007 6.24506 6.31598 6.53828 6.72176 7.28280 8.84600 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.025106 B = 0.005304 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.987258 B = 5277.823926 C = 5419.874030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.524 5.524 3 C 0.066 3.934 4 C -0.101 4.101 5 C 0.087 3.913 6 H 0.039 0.961 7 N -0.683 5.683 8 C 0.090 3.910 9 C -0.001 4.001 10 C -0.533 4.533 11 H 0.032 0.968 12 C 0.007 3.993 13 N -0.950 5.950 14 Si 0.953 3.047 15 H -0.265 1.265 16 H -0.251 1.251 17 H -0.283 1.283 18 C -0.084 4.084 19 H 0.093 0.907 20 C -0.125 4.125 21 C -0.112 4.112 22 C -0.110 4.110 23 C 0.072 3.928 24 H 0.038 0.962 25 H 0.015 0.985 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.023 0.977 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.339 0.661 33 H 0.014 0.986 34 H 0.053 0.947 35 H 0.019 0.981 36 H 0.016 0.984 37 H 0.267 0.733 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.909 -17.556 12.212 24.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.248 5.248 3 C -0.062 4.062 4 C -0.139 4.139 5 C -0.023 4.023 6 H 0.057 0.943 7 N -0.317 5.317 8 C -0.039 4.039 9 C -0.039 4.039 10 C -0.572 4.572 11 H 0.050 0.950 12 C -0.190 4.190 13 N -0.591 5.591 14 Si 0.776 3.224 15 H -0.190 1.190 16 H -0.174 1.174 17 H -0.209 1.209 18 C -0.103 4.103 19 H 0.112 0.888 20 C -0.163 4.163 21 C -0.150 4.150 22 C -0.148 4.148 23 C -0.037 4.037 24 H 0.056 0.944 25 H 0.034 0.966 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.041 0.959 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.160 0.840 33 H 0.032 0.968 34 H 0.072 0.928 35 H 0.037 0.963 36 H 0.034 0.966 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.171 -17.229 12.808 24.201 hybrid contribution 0.439 0.596 -1.715 1.868 sum -10.732 -16.633 11.093 22.691 Atomic orbital electron populations 1.22422 0.87162 1.02369 1.00768 1.62521 1.08199 1.14025 1.40041 1.21943 0.95099 0.89033 1.00149 1.21537 0.94969 0.99595 0.97801 1.21447 0.96925 0.94199 0.89690 0.94309 1.60631 1.50339 1.16076 1.04670 1.21621 0.91995 0.93681 0.96584 1.19403 0.95921 0.94752 0.93833 1.21404 1.10878 1.19995 1.04912 0.95008 1.25978 0.99259 0.94355 0.99404 1.70066 1.38818 1.26347 1.23838 0.85621 0.80018 0.78058 0.78707 1.18985 1.17449 1.20851 1.22003 0.95194 0.93138 0.99954 0.88842 1.22157 0.99405 0.96979 0.97726 1.22390 0.93748 0.97689 1.01181 1.21914 0.98146 0.93593 1.01188 1.22109 0.94745 0.95219 0.91647 0.94434 0.96598 0.90247 0.90709 0.90563 0.95908 0.90419 0.92749 0.84040 0.96755 0.92829 0.96266 0.96608 0.92409 0.90705 0.92290 0.90371 0.91227 0.90542 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.46 127.69 1.21 1.61 16 2 N -0.52 -11.98 5.00 -895.84 -4.48 -16.47 16 3 C 0.07 1.67 5.18 86.01 0.45 2.12 16 4 C -0.10 -2.64 5.61 30.74 0.17 -2.47 16 5 C 0.09 2.39 2.64 44.87 0.12 2.51 16 6 H 0.04 1.12 7.83 -2.39 -0.02 1.10 16 7 N -0.68 -22.42 4.89 -491.83 -2.40 -24.83 16 8 C 0.09 3.68 5.44 86.30 0.47 4.15 16 9 C 0.00 -0.06 4.30 29.85 0.13 0.07 16 10 C -0.53 -31.51 9.66 25.60 0.25 -31.26 16 11 H 0.03 2.06 7.99 -2.91 -0.02 2.03 16 12 C 0.01 0.42 5.47 84.66 0.46 0.88 16 13 N -0.95 -60.42 13.96 21.45 0.30 -60.13 16 14 Si 0.95 45.26 27.47 68.60 1.88 47.15 16 15 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 16 H -0.25 -11.29 6.54 99.48 0.65 -10.64 16 17 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 18 C -0.08 -1.89 2.42 -10.32 -0.02 -1.91 16 19 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 20 C -0.12 -2.50 6.26 31.33 0.20 -2.30 16 21 C -0.11 -1.84 6.86 32.03 0.22 -1.62 16 22 C -0.11 -1.98 5.49 31.05 0.17 -1.81 16 23 C 0.07 1.64 1.79 45.89 0.08 1.73 16 24 H 0.04 1.06 6.72 -2.39 -0.02 1.04 16 25 H 0.02 0.33 8.14 -2.39 -0.02 0.31 16 26 H 0.08 1.30 7.16 -2.39 -0.02 1.29 16 27 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.02 0.69 7.97 -2.39 -0.02 0.67 16 30 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.05 1.57 7.51 -2.39 -0.02 1.56 16 32 H 0.34 10.64 5.99 -89.69 -0.54 10.10 16 33 H 0.01 0.59 8.07 -2.39 -0.02 0.58 16 34 H 0.05 2.28 7.51 -2.38 -0.02 2.26 16 35 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 36 H 0.02 0.73 7.57 -2.39 -0.02 0.71 16 37 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.06 1.33 6.13 -2.39 -0.01 1.31 16 40 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 41 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.08 1.28 8.06 -2.39 -0.02 1.26 16 43 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 Total: -1.00 -64.98 319.94 -0.44 -65.42 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.36 Total: 17.15 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: 3.90 Total: -28.31 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -6.59 Total: -101.42 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.88 Total: 47.15 kcal Total: -64.98 -0.44 -65.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309597401.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.091 kcal (2) G-P(sol) polarization free energy of solvation -64.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds