Wall clock time and date at job start Mon Mar 30 2020 04:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46902 * 110.99886 * 2 1 4 4 C 1.53002 * 109.46962 * 293.95513 * 3 2 1 5 5 C 1.52998 * 109.46855 * 179.97438 * 4 3 2 6 6 C 1.50712 * 109.47115 * 180.02562 * 5 4 3 7 7 H 1.08000 * 119.99779 * 359.97438 * 6 5 4 8 8 C 1.37869 * 120.00071 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00281 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00025 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47104 * 90.00581 * 10 8 6 12 12 H 1.48507 * 109.47529 * 210.00316 * 10 8 6 13 13 H 1.48498 * 109.47190 * 330.00234 * 10 8 6 14 14 C 1.46895 * 111.00183 * 123.95516 * 2 1 3 15 15 H 1.09005 * 110.63004 * 292.94126 * 14 2 1 16 16 C 1.55139 * 110.70540 * 169.64400 * 14 2 1 17 17 C 1.54908 * 101.65364 * 205.96119 * 16 14 2 18 18 N 1.47850 * 104.79149 * 37.07194 * 17 16 14 19 19 C 1.46908 * 110.99620 * 213.63279 * 18 17 16 20 20 C 1.52999 * 117.49606 * 190.24319 * 19 18 17 21 21 C 1.52992 * 60.03358 * 107.47876 * 20 19 18 22 22 C 1.47437 * 108.56980 * 335.90252 * 18 17 16 23 23 H 1.09005 * 109.46799 * 296.04427 * 1 2 3 24 24 H 1.08998 * 109.47345 * 56.04012 * 1 2 3 25 25 H 1.08999 * 109.47308 * 176.04784 * 1 2 3 26 26 H 1.08999 * 109.47161 * 53.95331 * 3 2 1 27 27 H 1.08998 * 109.46871 * 173.95918 * 3 2 1 28 28 H 1.09004 * 109.47396 * 300.00214 * 4 3 2 29 29 H 1.09004 * 109.47322 * 60.00230 * 4 3 2 30 30 H 1.08999 * 109.47219 * 299.99789 * 5 4 3 31 31 H 1.09002 * 109.47362 * 60.00662 * 5 4 3 32 32 H 0.97002 * 120.00646 * 179.97438 * 9 8 6 33 33 H 1.09001 * 110.99486 * 324.05606 * 16 14 2 34 34 H 1.09000 * 110.98867 * 87.87241 * 16 14 2 35 35 H 1.08999 * 110.37940 * 278.24218 * 17 16 14 36 36 H 1.09007 * 110.37009 * 155.89531 * 17 16 14 37 37 H 1.08993 * 115.54931 * 44.57083 * 19 18 17 38 38 H 1.09004 * 117.49174 * 214.98077 * 20 19 18 39 39 H 1.08993 * 117.49821 * 359.97334 * 20 19 18 40 40 H 1.08999 * 117.50338 * 107.50048 * 21 20 19 41 41 H 1.09004 * 117.50231 * 252.52360 * 21 20 19 42 42 H 1.08999 * 109.89116 * 120.39983 * 22 18 17 43 43 H 1.09006 * 109.88689 * 241.58829 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6314 2.0574 -1.3183 5 6 2.1791 3.4860 -1.3180 6 6 1.8200 4.1620 -2.6163 7 1 1.2578 3.6260 -3.3666 8 6 2.2093 5.4645 -2.8460 9 7 2.8944 6.1170 -1.9325 10 14 1.7648 6.3021 -4.4554 11 1 0.4519 6.9815 -4.3137 12 1 2.8064 7.3042 -4.7962 13 1 1.6826 5.2865 -5.5357 14 6 1.9955 -0.7660 1.1375 15 1 1.7619 -0.2666 2.0779 16 6 3.5248 -0.9826 0.9922 17 6 3.7362 -2.2805 1.8110 18 7 2.5378 -3.1009 1.5340 19 6 2.1630 -3.8988 2.7092 20 6 1.0951 -4.9778 2.5191 21 6 2.5588 -5.3774 2.7150 22 6 1.4384 -2.2051 1.1309 23 1 -0.3633 0.4512 0.9234 24 1 -0.3634 0.5740 -0.8523 25 1 -0.3634 -1.0252 -0.0708 26 1 1.5611 1.9274 0.8309 27 1 3.0797 1.3444 0.1081 28 1 2.0657 1.5015 -2.1493 29 1 0.5471 2.0845 -1.4265 30 1 1.7444 4.0417 -0.4871 31 1 3.2634 3.4594 -1.2097 32 1 3.1686 7.0333 -2.0942 33 1 3.8008 -1.1303 -0.0519 34 1 4.0799 -0.1516 1.4274 35 1 3.8019 -2.0518 2.8747 36 1 4.6357 -2.7977 1.4768 37 1 2.1793 -3.3691 3.6616 38 1 0.4090 -5.1581 3.3467 39 1 0.6704 -5.0954 1.5222 40 1 2.8358 -5.8207 3.6715 41 1 3.0973 -5.7576 1.8469 42 1 1.0959 -2.4656 0.1295 43 1 0.6145 -2.2870 1.8400 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336689908.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:04 Heat of formation + Delta-G solvation = 26.091626 kcal Electronic energy + Delta-G solvation = -18639.274786 eV Core-core repulsion = 15912.791900 eV Total energy + Delta-G solvation = -2726.482886 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.68531 -37.44498 -35.37022 -33.46757 -31.32859 -29.87984 -28.35377 -26.91696 -24.98601 -22.73487 -22.34779 -21.94853 -20.67546 -19.85146 -19.69665 -16.81141 -16.51765 -16.07627 -15.33251 -14.75293 -14.41193 -14.39968 -13.94925 -13.72600 -13.30856 -12.86110 -12.64838 -12.33275 -12.21749 -11.85900 -11.73434 -11.69056 -11.30664 -11.13198 -10.93236 -10.91000 -10.70404 -10.60642 -10.49647 -10.41484 -10.24142 -9.57279 -9.30349 -9.03410 -8.50957 -8.31861 -8.06323 -5.97242 -3.99161 3.33880 3.39931 3.43954 3.49919 3.65478 4.13023 4.48632 4.52500 4.66668 4.68927 4.81928 4.96237 5.17542 5.23935 5.32086 5.37986 5.38818 5.40967 5.51681 5.56492 5.63700 5.73959 5.81963 5.83743 5.90880 5.94191 5.97115 6.04372 6.14217 6.23694 6.36046 6.72942 6.78111 6.81582 6.97779 7.15170 7.38144 7.42025 7.71458 7.86566 8.03449 8.46956 9.08132 9.64759 11.14276 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.055956 B = 0.003299 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.270453 B = 8484.480336 C = 8729.942975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.530 5.530 3 C 0.056 3.944 4 C -0.104 4.104 5 C 0.022 3.978 6 C -0.517 4.517 7 H 0.055 0.945 8 C 0.055 3.945 9 N -0.897 5.897 10 Si 0.892 3.108 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.062 3.938 15 H 0.042 0.958 16 C -0.121 4.121 17 C 0.048 3.952 18 N -0.500 5.500 19 C -0.003 4.003 20 C -0.171 4.171 21 C -0.163 4.163 22 C 0.054 3.946 23 H 0.019 0.981 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.026 0.974 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.012 0.988 31 H 0.015 0.985 32 H 0.260 0.740 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.045 0.955 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.778 -19.953 10.586 22.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.254 5.254 3 C -0.071 4.071 4 C -0.142 4.142 5 C -0.016 4.016 6 C -0.556 4.556 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.720 3.280 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.198 1.198 14 C -0.048 4.048 15 H 0.060 0.940 16 C -0.159 4.159 17 C -0.080 4.080 18 N -0.225 5.225 19 C -0.112 4.112 20 C -0.208 4.208 21 C -0.201 4.201 22 C -0.073 4.073 23 H 0.038 0.962 24 H 0.096 0.904 25 H 0.081 0.919 26 H 0.045 0.955 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.031 0.969 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.110 0.890 41 H 0.119 0.881 42 H 0.107 0.893 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.437 -20.366 9.791 22.643 hybrid contribution -0.691 1.612 0.666 1.877 sum -2.128 -18.753 10.458 21.577 Atomic orbital electron populations 1.22442 0.87867 1.01513 1.00936 1.62167 1.07547 1.15113 1.40601 1.22317 0.99706 0.86031 0.99088 1.21654 1.00036 0.98139 0.94399 1.19071 0.96216 0.89343 0.96928 1.21260 1.34675 0.97542 1.02095 0.92669 1.25028 0.95244 0.97529 0.96744 1.69968 1.38426 1.11241 1.34061 0.86600 0.78050 0.79337 0.84055 1.20727 1.21247 1.19829 1.22852 0.95457 0.94021 0.92495 0.94012 1.22779 0.94752 0.96415 1.02002 1.22995 0.93725 0.93015 0.98255 1.63401 1.04331 1.23581 1.31161 1.22627 1.04914 0.90476 0.93232 1.23000 0.92079 1.02514 1.03243 1.23020 0.97736 0.96241 1.03076 1.22841 0.92769 0.89998 1.01699 0.96201 0.90439 0.91888 0.95537 0.91137 0.92555 0.93449 0.96925 0.96633 0.93064 0.89220 0.90811 0.93689 0.90018 0.89788 0.88879 0.88236 0.88953 0.88135 0.89291 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.05 60.07 0.54 0.83 16 2 N -0.53 -8.09 4.59 -232.69 -1.07 -9.16 16 3 C 0.06 0.99 4.86 -3.82 -0.02 0.97 16 4 C -0.10 -2.21 5.08 -26.73 -0.14 -2.34 16 5 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 6 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 7 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -27.34 13.29 55.43 0.74 -26.61 16 10 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.06 0.81 2.64 -65.89 -0.17 0.63 16 15 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 16 C -0.12 -1.49 5.65 -24.59 -0.14 -1.63 16 17 C 0.05 0.51 6.73 -2.29 -0.02 0.50 16 18 N -0.50 -5.62 5.31 -223.24 -1.18 -6.81 16 19 C 0.00 -0.03 4.67 -67.67 -0.32 -0.35 16 20 C -0.17 -1.41 10.15 -26.74 -0.27 -1.69 16 21 C -0.16 -1.33 10.46 -26.70 -0.28 -1.61 16 22 C 0.05 0.64 5.24 -2.84 -0.01 0.62 16 23 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 24 H 0.08 1.14 6.30 -51.93 -0.33 0.82 16 25 H 0.06 0.75 6.64 -51.93 -0.34 0.40 16 26 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 27 H 0.07 1.25 6.92 -51.93 -0.36 0.89 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.05 0.99 6.47 -51.93 -0.34 0.65 16 30 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.07 0.88 7.88 -51.93 -0.41 0.47 16 35 H 0.04 0.45 7.68 -51.93 -0.40 0.05 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.78 7.94 -51.93 -0.41 0.37 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.09 1.13 7.31 -51.93 -0.38 0.75 16 43 H 0.05 0.57 7.52 -51.93 -0.39 0.18 16 LS Contribution 336.53 15.07 5.07 5.07 Total: -1.00 -30.14 336.53 -10.81 -40.95 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -7.97 Total: -3.03 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: -1.37 Total: -17.35 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: -1.52 Total: -42.58 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.14 -10.81 -40.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336689908.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.040 kcal (2) G-P(sol) polarization free energy of solvation -30.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds