Wall clock time and date at job start Mon Mar 30 2020 04:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46902 * 110.99886 * 2 1 4 4 C 1.53002 * 109.46962 * 293.95513 * 3 2 1 5 5 C 1.52998 * 109.46855 * 179.97438 * 4 3 2 6 6 C 1.50712 * 109.47115 * 180.02562 * 5 4 3 7 7 H 1.08000 * 119.99779 * 359.97438 * 6 5 4 8 8 C 1.37869 * 120.00071 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00281 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00025 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47104 * 90.00581 * 10 8 6 12 12 H 1.48507 * 109.47529 * 210.00316 * 10 8 6 13 13 H 1.48498 * 109.47190 * 330.00234 * 10 8 6 14 14 C 1.46895 * 111.00183 * 123.95516 * 2 1 3 15 15 H 1.09005 * 110.63004 * 292.94126 * 14 2 1 16 16 C 1.55139 * 110.70540 * 169.64400 * 14 2 1 17 17 C 1.54908 * 101.65364 * 205.96119 * 16 14 2 18 18 N 1.47850 * 104.79149 * 37.07194 * 17 16 14 19 19 C 1.46908 * 110.99620 * 213.63279 * 18 17 16 20 20 C 1.52999 * 117.49606 * 190.24319 * 19 18 17 21 21 C 1.52992 * 60.03358 * 107.47876 * 20 19 18 22 22 C 1.47437 * 108.56980 * 335.90252 * 18 17 16 23 23 H 1.09005 * 109.46799 * 296.04427 * 1 2 3 24 24 H 1.08998 * 109.47345 * 56.04012 * 1 2 3 25 25 H 1.08999 * 109.47308 * 176.04784 * 1 2 3 26 26 H 1.08999 * 109.47161 * 53.95331 * 3 2 1 27 27 H 1.08998 * 109.46871 * 173.95918 * 3 2 1 28 28 H 1.09004 * 109.47396 * 300.00214 * 4 3 2 29 29 H 1.09004 * 109.47322 * 60.00230 * 4 3 2 30 30 H 1.08999 * 109.47219 * 299.99789 * 5 4 3 31 31 H 1.09002 * 109.47362 * 60.00662 * 5 4 3 32 32 H 0.97002 * 120.00646 * 179.97438 * 9 8 6 33 33 H 1.09001 * 110.99486 * 324.05606 * 16 14 2 34 34 H 1.09000 * 110.98867 * 87.87241 * 16 14 2 35 35 H 1.08999 * 110.37940 * 278.24218 * 17 16 14 36 36 H 1.09007 * 110.37009 * 155.89531 * 17 16 14 37 37 H 1.08993 * 115.54931 * 44.57083 * 19 18 17 38 38 H 1.09004 * 117.49174 * 214.98077 * 20 19 18 39 39 H 1.08993 * 117.49821 * 359.97334 * 20 19 18 40 40 H 1.08999 * 117.50338 * 107.50048 * 21 20 19 41 41 H 1.09004 * 117.50231 * 252.52360 * 21 20 19 42 42 H 1.08999 * 109.89116 * 120.39983 * 22 18 17 43 43 H 1.09006 * 109.88689 * 241.58829 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6314 2.0574 -1.3183 5 6 2.1791 3.4860 -1.3180 6 6 1.8200 4.1620 -2.6163 7 1 1.2578 3.6260 -3.3666 8 6 2.2093 5.4645 -2.8460 9 7 2.8944 6.1170 -1.9325 10 14 1.7648 6.3021 -4.4554 11 1 0.4519 6.9815 -4.3137 12 1 2.8064 7.3042 -4.7962 13 1 1.6826 5.2865 -5.5357 14 6 1.9955 -0.7660 1.1375 15 1 1.7619 -0.2666 2.0779 16 6 3.5248 -0.9826 0.9922 17 6 3.7362 -2.2805 1.8110 18 7 2.5378 -3.1009 1.5340 19 6 2.1630 -3.8988 2.7092 20 6 1.0951 -4.9778 2.5191 21 6 2.5588 -5.3774 2.7150 22 6 1.4384 -2.2051 1.1309 23 1 -0.3633 0.4512 0.9234 24 1 -0.3634 0.5740 -0.8523 25 1 -0.3634 -1.0252 -0.0708 26 1 1.5611 1.9274 0.8309 27 1 3.0797 1.3444 0.1081 28 1 2.0657 1.5015 -2.1493 29 1 0.5471 2.0845 -1.4265 30 1 1.7444 4.0417 -0.4871 31 1 3.2634 3.4594 -1.2097 32 1 3.1686 7.0333 -2.0942 33 1 3.8008 -1.1303 -0.0519 34 1 4.0799 -0.1516 1.4274 35 1 3.8019 -2.0518 2.8747 36 1 4.6357 -2.7977 1.4768 37 1 2.1793 -3.3691 3.6616 38 1 0.4090 -5.1581 3.3467 39 1 0.6704 -5.0954 1.5222 40 1 2.8358 -5.8207 3.6715 41 1 3.0973 -5.7576 1.8469 42 1 1.0959 -2.4656 0.1295 43 1 0.6145 -2.2870 1.8400 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336689908.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:04 Heat of formation + Delta-G solvation = 7.192229 kcal Electronic energy + Delta-G solvation = -18640.094326 eV Core-core repulsion = 15912.791900 eV Total energy + Delta-G solvation = -2727.302426 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.63864 -38.49093 -36.47999 -35.35063 -33.19368 -30.81468 -29.62326 -28.38556 -26.55117 -24.16767 -23.19288 -22.87834 -21.81322 -21.39442 -20.69520 -18.49252 -17.63906 -17.40410 -16.53439 -16.27840 -15.85717 -15.53468 -15.24459 -14.88180 -14.34564 -14.28978 -13.78564 -13.74041 -13.56665 -13.26965 -12.97198 -12.83379 -12.67137 -12.51870 -12.34132 -12.28092 -12.11309 -11.91331 -11.82247 -11.41856 -11.33899 -11.28714 -11.10165 -10.91975 -10.55287 -9.40708 -9.25054 -8.20511 -6.31571 1.39732 1.41287 1.52735 2.40658 2.70524 2.90804 3.01404 3.12571 3.55072 3.77656 4.00224 4.05295 4.13046 4.14094 4.25928 4.33915 4.37889 4.43407 4.50040 4.54652 4.68043 4.71286 4.81515 4.83563 4.88421 4.91486 4.97888 5.00433 5.03649 5.10236 5.14119 5.21558 5.26930 5.33151 5.52206 5.73648 5.85455 5.90875 6.05156 6.18003 6.19682 6.27765 6.85190 7.37716 8.91527 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.055956 B = 0.003299 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.270453 B = 8484.480336 C = 8729.942975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.536 5.536 3 C 0.069 3.931 4 C -0.089 4.089 5 C 0.027 3.973 6 C -0.543 4.543 7 H 0.059 0.941 8 C -0.001 4.001 9 N -0.934 5.934 10 Si 0.966 3.034 11 H -0.271 1.271 12 H -0.281 1.281 13 H -0.263 1.263 14 C 0.061 3.939 15 H 0.041 0.959 16 C -0.121 4.121 17 C 0.054 3.946 18 N -0.510 5.510 19 C -0.019 4.019 20 C -0.166 4.166 21 C -0.156 4.156 22 C 0.064 3.936 23 H 0.023 0.977 24 H 0.065 0.935 25 H 0.085 0.915 26 H 0.021 0.979 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.051 0.949 30 H -0.011 1.011 31 H -0.009 1.009 32 H 0.264 0.736 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.092 0.908 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.482 -21.227 10.612 23.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.260 5.260 3 C -0.059 4.059 4 C -0.127 4.127 5 C -0.011 4.011 6 C -0.581 4.581 7 H 0.077 0.923 8 C -0.199 4.199 9 N -0.575 5.575 10 Si 0.790 3.210 11 H -0.197 1.197 12 H -0.206 1.206 13 H -0.188 1.188 14 C -0.049 4.049 15 H 0.059 0.941 16 C -0.160 4.160 17 C -0.074 4.074 18 N -0.235 5.235 19 C -0.128 4.128 20 C -0.203 4.203 21 C -0.193 4.193 22 C -0.063 4.063 23 H 0.042 0.958 24 H 0.084 0.916 25 H 0.103 0.897 26 H 0.039 0.961 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.007 0.993 31 H 0.010 0.990 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.127 0.873 39 H 0.111 0.889 40 H 0.128 0.872 41 H 0.112 0.888 42 H 0.097 0.903 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.149 -21.664 9.822 23.884 hybrid contribution -0.457 1.973 0.697 2.142 sum -2.606 -19.691 10.519 22.476 Atomic orbital electron populations 1.22479 0.86856 1.02795 1.00600 1.62105 1.08548 1.13334 1.42046 1.22015 0.99653 0.87437 0.96792 1.21395 0.99824 0.95233 0.96212 1.18962 0.94645 0.92135 0.95340 1.21693 1.34967 0.98311 1.03079 0.92291 1.25992 0.94917 0.98293 1.00690 1.70097 1.39345 1.11745 1.36285 0.85440 0.78060 0.78229 0.79285 1.19691 1.20639 1.18760 1.22908 0.95969 0.94520 0.91463 0.94074 1.22750 0.94308 0.97473 1.01434 1.22956 0.93909 0.92056 0.98438 1.63394 1.04169 1.23492 1.32418 1.22720 1.06480 0.90890 0.92723 1.23054 0.92335 1.01428 1.03488 1.23071 0.97585 0.95003 1.03686 1.22705 0.93230 0.88897 1.01494 0.95797 0.91590 0.89673 0.96054 0.91369 0.93026 0.93044 0.99268 0.99013 0.92750 0.90724 0.90832 0.92739 0.89400 0.89356 0.87301 0.88950 0.87241 0.88833 0.90258 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.05 127.69 1.16 1.70 16 2 N -0.54 -16.05 4.59 -890.10 -4.09 -20.14 16 3 C 0.07 2.47 4.86 86.30 0.42 2.88 16 4 C -0.09 -3.81 5.08 30.59 0.16 -3.65 16 5 C 0.03 1.45 4.97 29.85 0.15 1.60 16 6 C -0.54 -31.69 9.11 25.60 0.23 -31.46 16 7 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 8 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 9 N -0.93 -57.79 13.29 21.44 0.28 -57.50 16 10 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 14 C 0.06 1.54 2.64 46.10 0.12 1.66 16 15 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 16 C -0.12 -2.92 5.65 31.98 0.18 -2.74 16 17 C 0.05 1.08 6.73 86.77 0.58 1.67 16 18 N -0.51 -10.66 5.31 -860.20 -4.56 -15.23 16 19 C -0.02 -0.33 4.67 44.94 0.21 -0.12 16 20 C -0.17 -2.37 10.15 30.59 0.31 -2.06 16 21 C -0.16 -2.20 10.46 30.62 0.32 -1.88 16 22 C 0.06 1.42 5.24 86.65 0.45 1.87 16 23 H 0.02 0.61 8.14 -2.38 -0.02 0.59 16 24 H 0.07 1.89 6.30 -2.39 -0.02 1.88 16 25 H 0.08 1.87 6.64 -2.39 -0.02 1.86 16 26 H 0.02 0.78 8.12 -2.39 -0.02 0.76 16 27 H 0.07 2.46 6.92 -2.39 -0.02 2.44 16 28 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.05 2.15 6.47 -2.38 -0.02 2.13 16 30 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 31 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 32 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 33 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.07 1.75 7.88 -2.39 -0.02 1.73 16 35 H 0.05 1.00 7.68 -2.39 -0.02 0.98 16 36 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 37 H 0.09 1.44 7.94 -2.39 -0.02 1.42 16 38 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.11 1.16 8.14 -2.39 -0.02 1.15 16 41 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 42 H 0.08 1.91 7.31 -2.39 -0.02 1.89 16 43 H 0.06 1.23 7.52 -2.38 -0.02 1.21 16 Total: -1.00 -64.27 336.53 -0.65 -64.92 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.94 Total: 11.10 kcal Atomic # 6 Polarization: -34.90 SS G_CDS: 4.76 Total: -30.14 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -8.37 Total: -92.87 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -64.27 -0.65 -64.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336689908.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.114 kcal (2) G-P(sol) polarization free energy of solvation -64.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds