Wall clock time and date at job start Mon Mar 30 2020 04:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 110.99994 * 2 1 4 4 C 1.53004 * 109.47103 * 293.95423 * 3 2 1 5 5 C 1.52994 * 109.47516 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47554 * 179.97438 * 5 4 3 7 7 H 1.08005 * 119.99483 * 0.02562 * 6 5 4 8 8 C 1.37868 * 120.00433 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99814 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00372 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47184 * 60.00207 * 10 8 6 12 12 H 1.48505 * 109.47567 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47209 * 300.00474 * 10 8 6 14 14 C 1.46897 * 110.99957 * 123.95055 * 2 1 3 15 15 H 1.08999 * 110.27770 * 294.04060 * 14 2 1 16 16 C 1.54592 * 110.31128 * 56.23682 * 14 2 1 17 17 C 1.54936 * 102.92167 * 140.87199 * 16 14 2 18 18 N 1.48530 * 103.22917 * 322.58492 * 17 16 14 19 19 C 1.46896 * 111.00045 * 159.72313 * 18 17 16 20 20 C 1.53001 * 117.49995 * 105.73814 * 19 18 17 21 21 C 1.52999 * 117.49974 * 174.39928 * 19 18 17 22 22 C 1.47898 * 105.81818 * 39.20960 * 18 17 16 23 23 H 1.08999 * 109.47202 * 301.40716 * 1 2 3 24 24 H 1.08999 * 109.47146 * 61.41377 * 1 2 3 25 25 H 1.08996 * 109.46934 * 181.40972 * 1 2 3 26 26 H 1.09004 * 109.46997 * 53.94789 * 3 2 1 27 27 H 1.08997 * 109.47645 * 173.95246 * 3 2 1 28 28 H 1.09002 * 109.46843 * 300.00084 * 4 3 2 29 29 H 1.08997 * 109.47014 * 59.99437 * 4 3 2 30 30 H 1.09002 * 109.47204 * 299.99950 * 5 4 3 31 31 H 1.08999 * 109.46993 * 59.99359 * 5 4 3 32 32 H 0.97003 * 119.99870 * 179.97438 * 9 8 6 33 33 H 1.08997 * 110.72545 * 259.23073 * 16 14 2 34 34 H 1.08998 * 110.72207 * 22.51366 * 16 14 2 35 35 H 1.09004 * 110.66504 * 204.15098 * 17 16 14 36 36 H 1.08996 * 110.67102 * 81.02555 * 17 16 14 37 37 H 1.09011 * 115.54781 * 320.06863 * 19 18 17 38 38 H 1.09005 * 117.49463 * 215.00011 * 20 19 18 39 39 H 1.08993 * 117.49835 * 0.02562 * 20 19 18 40 40 H 1.08994 * 117.49733 * 359.97438 * 21 19 18 41 41 H 1.09006 * 117.49820 * 144.97363 * 21 19 18 42 42 H 1.09000 * 109.92280 * 94.02063 * 22 18 17 43 43 H 1.09004 * 109.91671 * 215.31709 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 -1.3183 5 6 2.1791 3.4860 -1.3181 6 6 1.8211 4.1615 -2.6168 7 1 1.2588 3.6255 -3.3671 8 6 2.2105 5.4639 -2.8467 9 7 2.8949 6.1167 -1.9328 10 14 1.7674 6.3009 -4.4568 11 1 0.2904 6.3366 -4.6061 12 1 2.2979 7.6880 -4.4561 13 1 2.3611 5.5439 -5.5881 14 6 1.9954 -0.7659 1.1376 15 1 1.7419 -0.2717 2.0755 16 6 1.4355 -2.2067 1.1196 17 6 2.6543 -3.0576 1.5567 18 7 3.7985 -2.3746 0.9005 19 6 5.0657 -2.7215 1.5575 20 6 5.9988 -3.6890 0.8265 21 6 6.3567 -2.2036 0.9203 22 6 3.5220 -0.9261 1.0135 23 1 -0.3633 0.5355 0.8771 24 1 -0.3633 0.4917 -0.9024 25 1 -0.3633 -1.0273 0.0253 26 1 1.5610 1.9274 0.8309 27 1 3.0797 1.3445 0.1083 28 1 2.0658 1.5015 -2.1492 29 1 0.5472 2.0844 -1.4266 30 1 1.7444 4.0417 -0.4873 31 1 3.2634 3.4594 -1.2096 32 1 3.1692 7.0329 -2.0947 33 1 0.6168 -2.3114 1.8315 34 1 1.1126 -2.4825 0.1157 35 1 2.5584 -4.0813 1.1948 36 1 2.7665 -3.0407 2.6407 37 1 5.0302 -2.7817 2.6453 38 1 6.5772 -4.3856 1.4334 39 1 5.6725 -4.0677 -0.1421 40 1 6.2658 -1.6059 0.0135 41 1 7.1705 -1.9227 1.5890 42 1 4.0110 -0.5228 1.9003 43 1 3.8783 -0.4094 0.1223 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336689915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:07 Heat of formation + Delta-G solvation = 28.364369 kcal Electronic energy + Delta-G solvation = -18781.634942 eV Core-core repulsion = 16055.250609 eV Total energy + Delta-G solvation = -2726.384333 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.62568 -37.40163 -35.31254 -33.44203 -31.36631 -29.57137 -28.71565 -26.86453 -24.70085 -22.82080 -22.41689 -21.76670 -20.67950 -19.89539 -19.49543 -16.72367 -16.45042 -16.17052 -15.31248 -14.66128 -14.46767 -14.27784 -14.09831 -13.69035 -13.12660 -12.85946 -12.52336 -12.25141 -12.07053 -11.86869 -11.61495 -11.56447 -11.34606 -11.18957 -11.00806 -10.90786 -10.71220 -10.50718 -10.46678 -10.39239 -10.14410 -9.55403 -9.27551 -9.02212 -8.50848 -8.29986 -8.01099 -5.95620 -3.97491 3.36689 3.40526 3.43551 3.60090 3.77115 4.14262 4.50455 4.56950 4.63493 4.79724 4.90916 5.00942 5.21261 5.27350 5.39191 5.40247 5.43144 5.52945 5.54120 5.62674 5.64438 5.76980 5.79096 5.87925 5.89465 5.99173 6.06005 6.08938 6.11905 6.19272 6.37963 6.74126 6.79548 6.84189 7.02296 7.17989 7.42103 7.45931 7.72999 7.88532 8.05117 8.48754 9.09548 9.66262 11.15852 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.026297 B = 0.003990 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.490966 B = 7015.328371 C = 7725.272058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.530 5.530 3 C 0.053 3.947 4 C -0.104 4.104 5 C 0.022 3.978 6 C -0.518 4.518 7 H 0.054 0.946 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.073 3.927 15 H 0.042 0.958 16 C -0.117 4.117 17 C 0.041 3.959 18 N -0.484 5.484 19 C -0.008 4.008 20 C -0.162 4.162 21 C -0.170 4.170 22 C 0.047 3.953 23 H 0.020 0.980 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.027 0.973 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.012 0.988 31 H 0.015 0.985 32 H 0.260 0.740 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.041 0.959 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.043 0.957 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.156 -18.906 9.401 21.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.255 5.255 3 C -0.074 4.074 4 C -0.142 4.142 5 C -0.016 4.016 6 C -0.556 4.556 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.720 3.280 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.202 1.202 14 C -0.037 4.037 15 H 0.060 0.940 16 C -0.155 4.155 17 C -0.087 4.087 18 N -0.209 5.209 19 C -0.117 4.117 20 C -0.200 4.200 21 C -0.207 4.207 22 C -0.081 4.081 23 H 0.038 0.962 24 H 0.094 0.906 25 H 0.081 0.919 26 H 0.045 0.955 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.031 0.969 31 H 0.033 0.967 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.060 0.940 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.112 0.888 42 H 0.061 0.939 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.455 -19.109 8.468 20.952 hybrid contribution -0.511 1.286 0.850 1.624 sum 0.944 -17.823 9.318 20.134 Atomic orbital electron populations 1.22405 0.87789 1.01138 1.01182 1.62207 1.07560 1.14912 1.40784 1.22358 0.99708 0.86170 0.99151 1.21637 1.00036 0.98100 0.94390 1.19066 0.96210 0.89375 0.96899 1.21222 1.34767 0.97566 1.02066 0.92731 1.25022 0.95257 0.97500 0.96710 1.69962 1.38420 1.11291 1.34023 0.86663 0.78733 0.78464 0.84167 1.20293 1.21339 1.20202 1.22457 0.94460 0.94340 0.92414 0.94034 1.22613 0.96669 0.93599 1.02664 1.23170 0.90269 0.98814 0.96468 1.64580 1.00129 1.05926 1.50239 1.22594 0.88081 1.06118 0.94912 1.23011 1.01831 0.92590 1.02577 1.23029 0.96980 0.97353 1.03361 1.22909 0.94603 0.88762 1.01791 0.96159 0.90622 0.91892 0.95512 0.91166 0.92564 0.93477 0.96921 0.96655 0.93029 0.91413 0.89370 0.90022 0.94035 0.89792 0.89030 0.88135 0.87986 0.88812 0.93857 0.88725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.04 60.06 0.54 0.86 16 2 N -0.53 -8.19 4.53 -233.25 -1.06 -9.24 16 3 C 0.05 0.95 4.74 -3.82 -0.02 0.94 16 4 C -0.10 -2.21 5.08 -26.73 -0.14 -2.35 16 5 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 6 C -0.52 -14.99 9.11 -34.45 -0.31 -15.31 16 7 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 9 N -0.90 -27.39 13.29 55.43 0.74 -26.66 16 10 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 C 0.07 0.96 2.73 -66.36 -0.18 0.78 16 15 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 16 C -0.12 -1.28 5.39 -24.87 -0.13 -1.42 16 17 C 0.04 0.42 6.56 -1.90 -0.01 0.41 16 18 N -0.48 -5.90 5.42 -222.50 -1.21 -7.11 16 19 C -0.01 -0.08 4.87 -67.72 -0.33 -0.41 16 20 C -0.16 -1.52 10.46 -26.69 -0.28 -1.80 16 21 C -0.17 -1.71 10.19 -26.69 -0.27 -1.99 16 22 C 0.05 0.62 5.56 -2.75 -0.02 0.61 16 23 H 0.02 0.27 8.13 -51.93 -0.42 -0.15 16 24 H 0.08 1.12 6.54 -51.93 -0.34 0.78 16 25 H 0.06 0.74 6.49 -51.93 -0.34 0.40 16 26 H 0.03 0.49 8.11 -51.93 -0.42 0.07 16 27 H 0.07 1.26 6.36 -51.93 -0.33 0.93 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.05 0.99 6.58 -51.93 -0.34 0.65 16 30 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 1.05 7.46 -51.93 -0.39 0.66 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.04 0.40 7.90 -51.93 -0.41 -0.01 16 37 H 0.08 0.83 7.97 -51.92 -0.41 0.41 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.04 0.55 7.77 -51.93 -0.40 0.15 16 43 H 0.09 1.46 6.69 -51.93 -0.35 1.11 16 LS Contribution 335.74 15.07 5.06 5.06 Total: -1.00 -30.37 335.74 -10.80 -41.17 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -7.92 Total: -2.52 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -1.38 Total: -17.69 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: -1.53 Total: -43.01 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.37 -10.80 -41.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336689915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.531 kcal (2) G-P(sol) polarization free energy of solvation -30.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds