Wall clock time and date at job start Mon Mar 30 2020 04:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 110.99994 * 2 1 4 4 C 1.53004 * 109.47103 * 293.95423 * 3 2 1 5 5 C 1.52994 * 109.47516 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47554 * 179.97438 * 5 4 3 7 7 H 1.08005 * 119.99483 * 0.02562 * 6 5 4 8 8 C 1.37868 * 120.00433 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99814 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00372 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47184 * 60.00207 * 10 8 6 12 12 H 1.48505 * 109.47567 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47209 * 300.00474 * 10 8 6 14 14 C 1.46897 * 110.99957 * 123.95055 * 2 1 3 15 15 H 1.08999 * 110.27770 * 294.04060 * 14 2 1 16 16 C 1.54592 * 110.31128 * 56.23682 * 14 2 1 17 17 C 1.54936 * 102.92167 * 140.87199 * 16 14 2 18 18 N 1.48530 * 103.22917 * 322.58492 * 17 16 14 19 19 C 1.46896 * 111.00045 * 159.72313 * 18 17 16 20 20 C 1.53001 * 117.49995 * 105.73814 * 19 18 17 21 21 C 1.52999 * 117.49974 * 174.39928 * 19 18 17 22 22 C 1.47898 * 105.81818 * 39.20960 * 18 17 16 23 23 H 1.08999 * 109.47202 * 301.40716 * 1 2 3 24 24 H 1.08999 * 109.47146 * 61.41377 * 1 2 3 25 25 H 1.08996 * 109.46934 * 181.40972 * 1 2 3 26 26 H 1.09004 * 109.46997 * 53.94789 * 3 2 1 27 27 H 1.08997 * 109.47645 * 173.95246 * 3 2 1 28 28 H 1.09002 * 109.46843 * 300.00084 * 4 3 2 29 29 H 1.08997 * 109.47014 * 59.99437 * 4 3 2 30 30 H 1.09002 * 109.47204 * 299.99950 * 5 4 3 31 31 H 1.08999 * 109.46993 * 59.99359 * 5 4 3 32 32 H 0.97003 * 119.99870 * 179.97438 * 9 8 6 33 33 H 1.08997 * 110.72545 * 259.23073 * 16 14 2 34 34 H 1.08998 * 110.72207 * 22.51366 * 16 14 2 35 35 H 1.09004 * 110.66504 * 204.15098 * 17 16 14 36 36 H 1.08996 * 110.67102 * 81.02555 * 17 16 14 37 37 H 1.09011 * 115.54781 * 320.06863 * 19 18 17 38 38 H 1.09005 * 117.49463 * 215.00011 * 20 19 18 39 39 H 1.08993 * 117.49835 * 0.02562 * 20 19 18 40 40 H 1.08994 * 117.49733 * 359.97438 * 21 19 18 41 41 H 1.09006 * 117.49820 * 144.97363 * 21 19 18 42 42 H 1.09000 * 109.92280 * 94.02063 * 22 18 17 43 43 H 1.09004 * 109.91671 * 215.31709 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 -1.3183 5 6 2.1791 3.4860 -1.3181 6 6 1.8211 4.1615 -2.6168 7 1 1.2588 3.6255 -3.3671 8 6 2.2105 5.4639 -2.8467 9 7 2.8949 6.1167 -1.9328 10 14 1.7674 6.3009 -4.4568 11 1 0.2904 6.3366 -4.6061 12 1 2.2979 7.6880 -4.4561 13 1 2.3611 5.5439 -5.5881 14 6 1.9954 -0.7659 1.1376 15 1 1.7419 -0.2717 2.0755 16 6 1.4355 -2.2067 1.1196 17 6 2.6543 -3.0576 1.5567 18 7 3.7985 -2.3746 0.9005 19 6 5.0657 -2.7215 1.5575 20 6 5.9988 -3.6890 0.8265 21 6 6.3567 -2.2036 0.9203 22 6 3.5220 -0.9261 1.0135 23 1 -0.3633 0.5355 0.8771 24 1 -0.3633 0.4917 -0.9024 25 1 -0.3633 -1.0273 0.0253 26 1 1.5610 1.9274 0.8309 27 1 3.0797 1.3445 0.1083 28 1 2.0658 1.5015 -2.1492 29 1 0.5472 2.0844 -1.4266 30 1 1.7444 4.0417 -0.4873 31 1 3.2634 3.4594 -1.2096 32 1 3.1692 7.0329 -2.0947 33 1 0.6168 -2.3114 1.8315 34 1 1.1126 -2.4825 0.1157 35 1 2.5584 -4.0813 1.1948 36 1 2.7665 -3.0407 2.6407 37 1 5.0302 -2.7817 2.6453 38 1 6.5772 -4.3856 1.4334 39 1 5.6725 -4.0677 -0.1421 40 1 6.2658 -1.6059 0.0135 41 1 7.1705 -1.9227 1.5890 42 1 4.0110 -0.5228 1.9003 43 1 3.8783 -0.4094 0.1223 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336689915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:06 Heat of formation + Delta-G solvation = 9.034875 kcal Electronic energy + Delta-G solvation = -18782.473132 eV Core-core repulsion = 16055.250609 eV Total energy + Delta-G solvation = -2727.222522 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.61576 -38.48122 -36.49389 -35.32867 -33.20691 -30.63913 -29.76524 -28.55862 -26.23861 -24.25576 -23.19464 -22.98260 -21.69217 -21.46042 -20.59854 -18.46207 -17.63752 -17.44999 -16.58167 -16.18630 -15.92886 -15.54653 -15.21486 -14.90605 -14.31745 -14.22306 -13.92580 -13.60417 -13.47465 -13.17904 -12.92792 -12.69002 -12.64583 -12.54533 -12.39407 -12.32759 -12.14942 -11.93273 -11.81896 -11.41350 -11.32691 -11.29259 -11.06286 -10.95490 -10.54570 -9.42352 -9.22909 -8.19988 -6.31232 1.39812 1.43344 1.51242 2.41104 2.75072 2.95088 2.97212 3.12930 3.60018 3.75042 4.01305 4.08088 4.12606 4.15870 4.26703 4.33009 4.39673 4.44547 4.56351 4.60732 4.70618 4.70937 4.80172 4.81650 4.90083 4.91883 4.95817 5.01042 5.05123 5.07151 5.10641 5.22763 5.27300 5.31526 5.51992 5.73637 5.85356 5.85859 6.08673 6.17440 6.24804 6.28977 6.85102 7.37948 8.91839 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.026297 B = 0.003990 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.490966 B = 7015.328371 C = 7725.272058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.538 5.538 3 C 0.067 3.933 4 C -0.087 4.087 5 C 0.027 3.973 6 C -0.544 4.544 7 H 0.059 0.941 8 C 0.000 4.000 9 N -0.934 5.934 10 Si 0.966 3.034 11 H -0.266 1.266 12 H -0.282 1.282 13 H -0.267 1.267 14 C 0.071 3.929 15 H 0.045 0.955 16 C -0.109 4.109 17 C 0.044 3.956 18 N -0.501 5.501 19 C -0.017 4.017 20 C -0.149 4.149 21 C -0.178 4.178 22 C 0.051 3.949 23 H 0.023 0.977 24 H 0.062 0.938 25 H 0.088 0.912 26 H 0.023 0.977 27 H 0.064 0.936 28 H 0.049 0.951 29 H 0.051 0.949 30 H -0.010 1.010 31 H -0.010 1.010 32 H 0.264 0.736 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.054 0.946 37 H 0.096 0.904 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.108 0.892 42 H 0.044 0.956 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.440 -20.439 9.501 22.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.263 5.263 3 C -0.061 4.061 4 C -0.125 4.125 5 C -0.011 4.011 6 C -0.582 4.582 7 H 0.077 0.923 8 C -0.198 4.198 9 N -0.574 5.574 10 Si 0.790 3.210 11 H -0.191 1.191 12 H -0.207 1.207 13 H -0.192 1.192 14 C -0.038 4.038 15 H 0.063 0.937 16 C -0.147 4.147 17 C -0.084 4.084 18 N -0.225 5.225 19 C -0.126 4.126 20 C -0.187 4.187 21 C -0.216 4.216 22 C -0.077 4.077 23 H 0.042 0.958 24 H 0.081 0.919 25 H 0.107 0.893 26 H 0.041 0.959 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.008 0.992 31 H 0.008 0.992 32 H 0.072 0.928 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.132 0.868 39 H 0.110 0.890 40 H 0.100 0.900 41 H 0.126 0.874 42 H 0.062 0.938 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.729 -20.668 8.573 22.388 hybrid contribution -0.256 1.736 0.846 1.948 sum 0.473 -18.932 9.419 21.151 Atomic orbital electron populations 1.22448 0.86621 1.02717 1.00697 1.62140 1.08671 1.13054 1.42387 1.22047 0.99505 0.87716 0.96852 1.21370 0.99804 0.95195 0.96162 1.18959 0.94571 0.92168 0.95393 1.21658 1.35134 0.98367 1.03044 0.92311 1.25990 0.94887 0.98236 1.00695 1.70097 1.39302 1.11758 1.36259 0.85494 0.78956 0.77297 0.79267 1.19092 1.20687 1.19200 1.22543 0.94398 0.95430 0.91462 0.93744 1.22591 0.97566 0.91647 1.02914 1.23221 0.89050 0.98962 0.97144 1.64545 1.01460 1.05072 1.51437 1.22713 0.87467 1.06898 0.95517 1.23056 1.01004 0.92300 1.02299 1.23037 0.97568 0.98027 1.02931 1.22759 0.94780 0.89719 1.00424 0.95800 0.91876 0.89320 0.95921 0.91718 0.93254 0.93022 0.99189 0.99163 0.92753 0.89172 0.90169 0.88866 0.92761 0.88631 0.86754 0.88978 0.90041 0.87389 0.93750 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.04 127.69 1.15 1.76 16 2 N -0.54 -16.33 4.53 -891.88 -4.04 -20.38 16 3 C 0.07 2.44 4.74 86.30 0.41 2.85 16 4 C -0.09 -3.82 5.08 30.59 0.16 -3.66 16 5 C 0.03 1.47 4.97 29.84 0.15 1.61 16 6 C -0.54 -32.05 9.11 25.60 0.23 -31.81 16 7 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 8 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 9 N -0.93 -58.04 13.29 21.44 0.28 -57.76 16 10 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 13 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 14 C 0.07 1.78 2.73 45.80 0.12 1.91 16 15 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 16 C -0.11 -2.12 5.39 31.80 0.17 -1.95 16 17 C 0.04 0.80 6.56 86.65 0.57 1.37 16 18 N -0.50 -11.64 5.42 -857.86 -4.65 -16.28 16 19 C -0.02 -0.34 4.87 44.92 0.22 -0.12 16 20 C -0.15 -2.54 10.46 30.62 0.32 -2.22 16 21 C -0.18 -3.50 10.19 30.62 0.31 -3.19 16 22 C 0.05 1.35 5.56 86.45 0.48 1.83 16 23 H 0.02 0.61 8.13 -2.39 -0.02 0.59 16 24 H 0.06 1.81 6.54 -2.39 -0.02 1.80 16 25 H 0.09 1.87 6.49 -2.39 -0.02 1.86 16 26 H 0.02 0.84 8.11 -2.39 -0.02 0.82 16 27 H 0.06 2.42 6.36 -2.39 -0.02 2.41 16 28 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.05 2.19 6.58 -2.39 -0.02 2.17 16 30 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 31 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 32 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 33 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.08 1.72 7.46 -2.39 -0.02 1.70 16 35 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.05 0.87 7.90 -2.39 -0.02 0.85 16 37 H 0.10 1.67 7.97 -2.38 -0.02 1.65 16 38 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 42 H 0.04 1.13 7.77 -2.39 -0.02 1.11 16 43 H 0.07 2.12 6.69 -2.38 -0.02 2.10 16 Total: -1.00 -65.72 335.74 -0.68 -66.40 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 0.94 Total: 12.02 kcal Atomic # 6 Polarization: -35.95 SS G_CDS: 4.76 Total: -31.19 kcal Atomic # 7 Polarization: -86.02 SS G_CDS: -8.41 Total: -94.42 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -65.72 -0.68 -66.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336689915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.432 kcal (2) G-P(sol) polarization free energy of solvation -65.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds