Wall clock time and date at job start Mon Mar 30 2020 04:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00393 * 2 1 4 4 C 1.53007 * 109.46882 * 66.04868 * 3 2 1 5 5 C 1.52991 * 109.47221 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47040 * 179.97438 * 5 4 3 7 7 H 1.08004 * 120.00053 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99972 * 179.97438 * 6 5 4 9 9 N 1.31506 * 119.99671 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99805 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47491 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47160 * 120.00551 * 10 8 6 13 13 H 1.48505 * 109.47107 * 240.00299 * 10 8 6 14 14 C 1.46900 * 110.99694 * 236.04988 * 2 1 3 15 15 H 1.08997 * 109.57727 * 60.34099 * 14 2 1 16 16 C 1.53144 * 109.57893 * 299.94536 * 14 2 1 17 17 N 1.46911 * 109.36645 * 240.21014 * 16 14 2 18 18 C 1.46946 * 111.05764 * 61.99187 * 17 16 14 19 19 C 1.53117 * 109.35255 * 298.03320 * 18 17 16 20 20 C 1.53386 * 109.57711 * 180.60333 * 14 2 1 21 21 C 1.53397 * 108.60016 * 179.54968 * 20 14 2 22 22 C 1.46940 * 111.05979 * 297.98991 * 17 16 14 23 23 H 1.09004 * 109.47179 * 54.65818 * 1 2 3 24 24 H 1.08997 * 109.47674 * 174.65840 * 1 2 3 25 25 H 1.09005 * 109.47157 * 294.66448 * 1 2 3 26 26 H 1.08997 * 109.47441 * 306.05496 * 3 2 1 27 27 H 1.08998 * 109.47556 * 186.04423 * 3 2 1 28 28 H 1.09008 * 109.46665 * 300.00166 * 4 3 2 29 29 H 1.09005 * 109.46897 * 59.99516 * 4 3 2 30 30 H 1.08998 * 109.47348 * 299.99635 * 5 4 3 31 31 H 1.08995 * 109.47589 * 60.00047 * 5 4 3 32 32 H 0.97005 * 120.00026 * 180.02562 * 9 8 6 33 33 H 1.08993 * 109.48748 * 0.17640 * 16 14 2 34 34 H 1.08998 * 109.48692 * 120.24423 * 16 14 2 35 35 H 1.09004 * 109.49052 * 178.06667 * 18 17 16 36 36 H 1.09001 * 109.50720 * 58.00975 * 18 17 16 37 37 H 1.09002 * 109.57766 * 240.14410 * 19 18 17 38 38 H 1.09003 * 109.58009 * 119.75613 * 19 18 17 39 39 H 1.09001 * 110.11427 * 300.19253 * 20 14 2 40 40 H 1.09004 * 109.56984 * 60.80415 * 21 20 14 41 41 H 1.08998 * 109.57425 * 181.18707 * 21 20 14 42 42 H 1.09001 * 109.49432 * 181.92207 * 22 17 16 43 43 H 1.09004 * 109.49030 * 301.97217 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0574 1.3184 5 6 2.1794 3.4859 1.3182 6 6 1.8204 4.1617 2.6164 7 1 1.2574 3.6260 3.3665 8 6 2.2106 5.4639 2.8467 9 7 2.8957 6.1163 1.9333 10 14 1.7662 6.3013 4.4563 11 1 0.9981 5.3591 5.3090 12 1 3.0079 6.7085 5.1617 13 1 0.9388 7.5026 4.1773 14 6 1.9954 -0.7659 -1.1377 15 1 1.6518 -0.3178 -2.0699 16 6 1.5068 -2.2147 -1.0509 17 7 2.6645 -3.1145 -0.9581 18 6 3.4444 -2.8476 0.2583 19 6 3.9876 -1.4168 0.2091 20 6 3.5287 -0.7573 -1.0977 21 6 4.0537 -1.5715 -2.2870 22 6 3.5086 -3.0142 -2.1566 23 1 -0.3634 0.5945 -0.8383 24 1 -0.3634 -1.0231 -0.0957 25 1 -0.3634 0.4289 0.9340 26 1 1.5611 1.9274 -0.8308 27 1 3.0798 1.3444 -0.1082 28 1 0.5472 2.0844 1.4266 29 1 2.0659 1.5013 2.1493 30 1 3.2636 3.4592 1.2098 31 1 1.7447 4.0416 0.4874 32 1 3.1706 7.0323 2.0954 33 1 0.8809 -2.3351 -0.1668 34 1 0.9283 -2.4574 -1.9423 35 1 4.2755 -3.5503 0.3190 36 1 2.8051 -2.9640 1.1335 37 1 5.0769 -1.4383 0.2443 38 1 3.6040 -0.8510 1.0580 39 1 3.8993 0.2663 -1.1513 40 1 3.7170 -1.1161 -3.2183 41 1 5.1432 -1.5934 -2.2620 42 1 4.3393 -3.7154 -2.0762 43 1 2.9159 -3.2523 -3.0399 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380456104.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:09 Heat of formation + Delta-G solvation = 0.709989 kcal Electronic energy + Delta-G solvation = -19600.735155 eV Core-core repulsion = 16873.151639 eV Total energy + Delta-G solvation = -2727.583517 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.85352 -36.91961 -33.65813 -32.18474 -31.56145 -30.87203 -29.33974 -27.11285 -25.20541 -23.12205 -22.92366 -22.51131 -20.98578 -19.88472 -17.40036 -16.60309 -16.36405 -16.22488 -16.04099 -14.66728 -14.52633 -14.14446 -13.74956 -13.34171 -13.00852 -12.86245 -12.38738 -12.28996 -12.16187 -12.10173 -11.90942 -11.67687 -11.59249 -11.34849 -11.03766 -10.91455 -10.72684 -10.49558 -10.39310 -10.26388 -10.05626 -9.57660 -9.32495 -9.03337 -8.33329 -8.26428 -8.00394 -5.98409 -4.00235 3.31962 3.39339 3.43951 3.97071 4.08495 4.47904 4.56617 4.77058 4.88121 5.02731 5.16225 5.19954 5.26452 5.33141 5.37471 5.39207 5.50516 5.59016 5.64667 5.75474 5.78045 5.84710 5.89180 5.92004 6.01823 6.07954 6.13490 6.21078 6.22388 6.38687 6.42210 6.71898 6.81894 7.01462 7.04300 7.15229 7.40563 7.43259 7.70453 7.85333 8.02277 8.45951 9.07249 9.63768 11.13136 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.038822 B = 0.004280 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.063689 B = 6539.947465 C = 6699.417960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.532 5.532 3 C 0.052 3.948 4 C -0.103 4.103 5 C 0.022 3.978 6 C -0.517 4.517 7 H 0.055 0.945 8 C 0.055 3.945 9 N -0.897 5.897 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 C 0.056 3.944 15 H 0.036 0.964 16 C 0.059 3.941 17 N -0.529 5.529 18 C 0.058 3.942 19 C -0.140 4.140 20 C -0.087 4.087 21 C -0.149 4.149 22 C 0.052 3.948 23 H 0.021 0.979 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.025 0.975 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.014 0.986 31 H 0.012 0.988 32 H 0.259 0.741 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.083 -17.933 -8.251 19.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.256 5.256 3 C -0.075 4.075 4 C -0.141 4.141 5 C -0.016 4.016 6 C -0.555 4.555 7 H 0.074 0.926 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.211 1.211 14 C -0.054 4.054 15 H 0.054 0.946 16 C -0.070 4.070 17 N -0.249 5.249 18 C -0.070 4.070 19 C -0.179 4.179 20 C -0.107 4.107 21 C -0.189 4.189 22 C -0.077 4.077 23 H 0.040 0.960 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.044 0.956 27 H 0.090 0.910 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.033 0.967 31 H 0.031 0.969 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.121 -18.526 -7.820 20.109 hybrid contribution -0.124 2.046 -0.049 2.051 sum -0.003 -16.479 -7.869 18.262 Atomic orbital electron populations 1.22438 0.87947 1.00856 1.01469 1.62198 1.07355 1.14898 1.41145 1.22393 0.99835 0.86268 0.99021 1.21625 1.00009 0.98074 0.94352 1.19071 0.96145 0.89424 0.96949 1.21292 1.34574 0.97565 1.02065 0.92647 1.25029 0.95251 0.97519 0.96723 1.69977 1.38492 1.11228 1.33955 0.86551 0.78178 0.79472 0.83908 1.19709 1.21017 1.21067 1.22328 0.95011 0.95590 0.92487 0.94564 1.22370 0.93099 0.88849 1.02676 1.62588 1.08889 1.50843 1.02587 1.22127 0.97153 0.95094 0.92628 1.22091 0.99931 0.97445 0.98443 1.21266 0.94385 0.99890 0.95131 1.22570 1.00987 0.97047 0.98286 1.22485 0.96803 0.95235 0.93176 0.96015 0.91870 0.90710 0.95630 0.90998 0.93526 0.92731 0.96733 0.96945 0.93126 0.89339 0.91181 0.91338 0.90543 0.92481 0.89787 0.90113 0.91761 0.91549 0.90786 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.98 60.06 0.54 0.83 16 2 N -0.53 -7.89 3.81 -234.55 -0.89 -8.79 16 3 C 0.05 0.92 4.73 -3.82 -0.02 0.90 16 4 C -0.10 -2.16 5.07 -26.73 -0.14 -2.30 16 5 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 6 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 7 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -27.30 13.29 55.43 0.74 -26.57 16 10 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 14 C 0.06 0.72 1.90 -67.44 -0.13 0.60 16 15 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 16 C 0.06 0.67 5.13 -3.74 -0.02 0.65 16 17 N -0.53 -5.92 5.22 -233.21 -1.22 -7.13 16 18 C 0.06 0.65 6.09 -3.74 -0.02 0.63 16 19 C -0.14 -1.74 5.61 -26.46 -0.15 -1.89 16 20 C -0.09 -1.10 2.45 -90.01 -0.22 -1.32 16 21 C -0.15 -1.55 5.90 -25.59 -0.15 -1.70 16 22 C 0.05 0.51 6.13 -2.87 -0.02 0.49 16 23 H 0.02 0.29 8.07 -51.93 -0.42 -0.12 16 24 H 0.06 0.72 6.07 -51.93 -0.32 0.41 16 25 H 0.07 1.08 6.73 -51.93 -0.35 0.73 16 26 H 0.03 0.47 8.07 -51.93 -0.42 0.05 16 27 H 0.07 1.29 5.73 -51.93 -0.30 0.99 16 28 H 0.05 0.97 6.67 -51.92 -0.35 0.62 16 29 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 33 H 0.09 1.06 6.33 -51.93 -0.33 0.73 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.08 1.22 7.62 -51.93 -0.40 0.83 16 39 H 0.08 1.14 6.19 -51.93 -0.32 0.82 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 319.96 15.07 4.82 4.82 Total: -1.00 -29.85 319.96 -10.25 -40.10 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -7.81 Total: -2.98 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -0.87 Total: -16.35 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: -1.37 Total: -42.49 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.85 -10.25 -40.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380456104.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.810 kcal (2) G-P(sol) polarization free energy of solvation -29.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds