Wall clock time and date at job start Mon Mar 30 2020 04:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.44304 * 111.00024 * 2 1 4 4 C 1.53986 * 108.30966 * 221.34801 * 3 2 1 5 5 C 1.45880 * 112.66755 * 278.59265 * 4 3 2 6 6 C 1.54525 * 111.67355 * 61.49421 * 5 4 3 7 7 H 1.08999 * 109.56972 * 42.71095 * 6 5 4 8 8 N 1.46894 * 109.57488 * 162.95716 * 6 5 4 9 9 C 1.46897 * 111.00188 * 206.24978 * 8 6 5 10 10 C 1.53002 * 109.46966 * 184.30002 * 9 8 6 11 11 C 1.50692 * 115.55264 * 294.82711 * 10 9 8 12 12 H 1.08002 * 120.00186 * 92.40597 * 11 10 9 13 13 C 1.37883 * 120.00239 * 272.40210 * 11 10 9 14 14 N 1.31514 * 119.99919 * 183.36092 * 13 11 10 15 15 Si 1.86797 * 119.99844 * 3.36723 * 13 11 10 16 16 H 1.48503 * 109.46991 * 265.50419 * 15 13 11 17 17 H 1.48493 * 109.47415 * 145.50666 * 15 13 11 18 18 H 1.48500 * 109.47408 * 25.50118 * 15 13 11 19 19 C 1.53002 * 117.49904 * 80.50181 * 10 9 8 20 20 C 1.53008 * 117.49436 * 149.15809 * 10 9 8 21 21 C 1.50536 * 108.86060 * 282.77418 * 6 5 4 22 22 C 1.47945 * 110.99745 * 127.40040 * 2 1 3 23 23 H 1.08997 * 109.46644 * 56.04768 * 1 2 3 24 24 H 1.08995 * 109.47233 * 176.05357 * 1 2 3 25 25 H 1.08998 * 109.47155 * 296.05157 * 1 2 3 26 26 H 1.08994 * 109.70038 * 101.64004 * 3 2 1 27 27 H 1.09000 * 109.72495 * 341.06522 * 3 2 1 28 28 H 1.08995 * 108.84177 * 157.77019 * 4 3 2 29 29 H 1.09001 * 108.76053 * 39.35347 * 4 3 2 30 30 H 1.09003 * 109.03844 * 300.92978 * 5 4 3 31 31 H 1.09000 * 108.97972 * 182.02083 * 5 4 3 32 32 H 1.00903 * 111.00178 * 82.29799 * 8 6 5 33 33 H 1.08998 * 109.47125 * 64.30630 * 9 8 6 34 34 H 1.08991 * 109.47301 * 304.30282 * 9 8 6 35 35 H 0.97005 * 119.99430 * 180.02562 * 14 13 11 36 36 H 1.08996 * 117.50294 * 215.00544 * 19 10 9 37 37 H 1.09007 * 117.49362 * 0.02562 * 19 10 9 38 38 H 1.08996 * 117.50202 * 359.97438 * 20 10 9 39 39 H 1.08999 * 117.49664 * 144.97701 * 20 10 9 40 40 H 1.09000 * 108.78840 * 212.63600 * 21 6 5 41 41 H 1.08993 * 108.78933 * 330.85448 * 21 6 5 42 42 H 1.08997 * 108.71168 * 313.18313 * 22 2 1 43 43 H 1.09000 * 108.70758 * 71.32200 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9862 1.3472 0.0000 4 6 3.1841 1.4055 -0.9658 5 6 4.4182 0.9164 -0.3609 6 6 4.2993 -0.5657 0.0597 7 1 3.7908 -1.1278 -0.7236 8 7 5.6403 -1.1252 0.2755 9 6 5.6451 -2.5785 0.0613 10 6 7.0283 -3.1390 0.3983 11 6 8.1514 -2.6786 -0.4947 12 1 8.7344 -1.8104 -0.2252 13 6 8.4348 -3.3659 -1.6560 14 7 9.4562 -3.0044 -2.4015 15 14 7.3680 -4.8104 -2.1704 16 1 7.9759 -6.0738 -1.6810 17 1 7.2690 -4.8501 -3.6515 18 1 6.0109 -4.6559 -1.5875 19 6 7.3526 -3.3799 1.8740 20 6 7.0983 -4.5674 0.9422 21 6 3.5074 -0.6469 1.3373 22 6 1.9992 -0.8389 1.0972 23 1 -0.3632 0.5740 -0.8524 24 1 -0.3633 -1.0252 -0.0707 25 1 -0.3633 0.4513 0.9232 26 1 2.3111 1.6160 1.0050 27 1 1.2120 2.0384 -0.3329 28 1 3.3319 2.4383 -1.2813 29 1 2.9574 0.7989 -1.8426 30 1 4.6460 1.5185 0.5187 31 1 5.2303 1.0177 -1.0809 32 1 5.9848 -0.8941 1.1953 33 1 5.4104 -2.7929 -0.9812 34 1 4.8982 -3.0430 0.7049 35 1 9.6553 -3.4877 -3.2186 36 1 8.3782 -3.2053 2.1990 37 1 6.5803 -3.1395 2.6048 38 1 6.1590 -5.1076 1.0603 39 1 7.9566 -5.1742 0.6537 40 1 3.8783 -1.4849 1.9276 41 1 3.6585 0.2723 1.9031 42 1 1.4649 -0.5930 2.0149 43 1 1.8158 -1.8861 0.8566 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381694552.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:25 Heat of formation + Delta-G solvation = 31.344727 kcal Electronic energy + Delta-G solvation = -19606.940662 eV Core-core repulsion = 16880.685567 eV Total energy + Delta-G solvation = -2726.255095 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.35397 -37.28786 -35.37630 -33.05225 -31.91586 -30.87293 -27.57072 -26.02565 -24.91136 -24.26153 -22.87063 -21.54515 -20.25402 -19.73775 -18.75395 -16.31671 -16.07993 -15.72599 -15.15290 -14.83228 -14.34658 -13.94898 -13.79970 -13.49628 -13.16006 -13.13044 -12.75213 -12.59546 -12.31672 -12.02435 -11.80231 -11.48152 -11.15868 -11.02074 -10.81001 -10.66451 -10.54392 -10.38481 -10.28081 -10.23338 -9.87267 -9.44177 -8.95607 -8.42357 -8.39883 -8.27892 -7.55016 -5.94924 -3.93691 3.38105 3.47416 3.52323 3.82491 4.54506 4.55647 4.85782 4.93559 5.01791 5.08295 5.17254 5.20396 5.31103 5.33433 5.36310 5.49466 5.61623 5.69264 5.73492 5.82499 5.83444 5.93431 6.02529 6.11539 6.23387 6.23979 6.25741 6.33921 6.40615 6.49691 6.60517 6.66969 6.69655 6.80242 6.99373 7.13969 7.18566 7.28777 7.85900 7.92700 8.19133 8.68212 9.10631 9.69117 11.17837 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.026598 B = 0.005668 C = 0.005478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.476698 B = 4938.456264 C = 5110.099824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.552 5.552 3 C 0.062 3.938 4 C -0.111 4.111 5 C -0.106 4.106 6 C 0.095 3.905 7 H 0.081 0.919 8 N -0.663 5.663 9 C 0.102 3.898 10 C 0.007 3.993 11 C -0.461 4.461 12 H 0.078 0.922 13 C 0.074 3.926 14 N -0.904 5.904 15 Si 0.878 3.122 16 H -0.283 1.283 17 H -0.296 1.296 18 H -0.259 1.259 19 C -0.185 4.185 20 C -0.202 4.202 21 C -0.148 4.148 22 C 0.069 3.931 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.020 0.980 26 H 0.041 0.959 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.333 0.667 33 H 0.067 0.933 34 H 0.000 1.000 35 H 0.261 0.739 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.027 0.973 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.661 6.106 6.613 18.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.277 5.277 3 C -0.066 4.066 4 C -0.150 4.150 5 C -0.144 4.144 6 C -0.015 4.015 7 H 0.100 0.900 8 N -0.291 5.291 9 C -0.027 4.027 10 C 0.006 3.994 11 C -0.499 4.499 12 H 0.096 0.904 13 C -0.127 4.127 14 N -0.542 5.542 15 Si 0.706 3.294 16 H -0.210 1.210 17 H -0.223 1.223 18 H -0.184 1.184 19 C -0.222 4.222 20 C -0.240 4.240 21 C -0.188 4.188 22 C -0.059 4.059 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.039 0.961 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.151 0.849 33 H 0.085 0.915 34 H 0.018 0.982 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.045 0.955 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.167 6.007 5.385 18.068 hybrid contribution -1.289 -0.881 1.274 2.015 sum -17.456 5.127 6.659 19.374 Atomic orbital electron populations 1.22371 0.87346 1.02011 0.99997 1.60701 1.06926 1.13482 1.46596 1.21855 0.97304 0.88611 0.98860 1.20475 0.94455 1.00657 0.99372 1.20523 0.97807 0.95091 1.00981 1.21281 0.88683 0.95840 0.95744 0.90046 1.60347 1.21246 1.12582 1.34962 1.21727 0.95016 0.86247 0.99661 1.19488 0.94474 0.92971 0.92500 1.20146 1.12220 1.13281 1.04245 0.90435 1.24926 0.94590 0.97049 0.96131 1.69902 1.27943 1.41449 1.14926 0.86877 0.82393 0.83083 0.76998 1.20978 1.22255 1.18355 1.22800 1.00781 1.04325 0.94341 1.22971 1.01042 0.92675 1.07347 1.22262 0.94441 1.01914 1.00167 1.22320 0.94966 0.97585 0.91041 0.91419 0.91678 0.96137 0.94073 0.91915 0.92364 0.91133 0.93261 0.90580 0.84889 0.91457 0.98218 0.92888 0.89604 0.91585 0.91312 0.89486 0.91536 0.92342 0.95462 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.30 60.07 0.56 0.85 16 2 N -0.55 -6.43 4.25 -242.92 -1.03 -7.46 16 3 C 0.06 0.68 5.41 -4.70 -0.03 0.65 16 4 C -0.11 -1.34 5.38 -29.59 -0.16 -1.50 16 5 C -0.11 -1.50 4.97 -29.30 -0.15 -1.65 16 6 C 0.10 1.48 2.18 -68.15 -0.15 1.33 16 7 H 0.08 1.41 7.49 -51.93 -0.39 1.02 16 8 N -0.66 -12.49 6.13 -107.19 -0.66 -13.14 16 9 C 0.10 2.14 4.82 -3.82 -0.02 2.12 16 10 C 0.01 0.16 0.89 -155.66 -0.14 0.02 16 11 C -0.46 -12.93 9.32 -34.44 -0.32 -13.25 16 12 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 13 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 14 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 15 Si 0.88 22.16 24.96 -169.99 -4.24 17.92 16 16 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 17 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 18 H -0.26 -6.19 5.64 56.52 0.32 -5.87 16 19 C -0.19 -3.76 9.96 -26.69 -0.27 -4.02 16 20 C -0.20 -4.36 7.59 -26.69 -0.20 -4.57 16 21 C -0.15 -1.94 4.64 -27.48 -0.13 -2.07 16 22 C 0.07 0.81 5.44 -2.77 -0.02 0.80 16 23 H 0.07 0.57 7.98 -51.93 -0.41 0.15 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 26 H 0.04 0.45 6.79 -51.93 -0.35 0.10 16 27 H 0.06 0.59 7.51 -51.93 -0.39 0.20 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 30 H 0.05 0.66 7.59 -51.93 -0.39 0.26 16 31 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.33 5.99 8.36 -39.29 -0.33 5.66 16 33 H 0.07 1.55 6.62 -51.93 -0.34 1.20 16 34 H 0.00 0.00 7.48 -51.93 -0.39 -0.39 16 35 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.09 1.98 7.32 -51.93 -0.38 1.60 16 40 H 0.07 0.91 7.28 -51.93 -0.38 0.53 16 41 H 0.06 0.72 6.66 -51.93 -0.35 0.38 16 42 H 0.03 0.30 8.02 -51.93 -0.42 -0.12 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 323.20 15.07 4.87 4.87 Total: -1.00 -29.82 323.20 -9.36 -39.18 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -7.96 Total: 5.12 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -1.11 Total: -19.24 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: -0.92 Total: -47.84 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.24 Total: 17.92 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.82 -9.36 -39.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381694552.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.521 kcal (2) G-P(sol) polarization free energy of solvation -29.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds