Wall clock time and date at job start Mon Mar 30 2020 04:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.44304 * 111.00024 * 2 1 4 4 C 1.53986 * 108.30966 * 221.34801 * 3 2 1 5 5 C 1.45880 * 112.66755 * 278.59265 * 4 3 2 6 6 C 1.54525 * 111.67355 * 61.49421 * 5 4 3 7 7 H 1.08999 * 109.56972 * 42.71095 * 6 5 4 8 8 N 1.46894 * 109.57488 * 162.95716 * 6 5 4 9 9 C 1.46897 * 111.00188 * 206.24978 * 8 6 5 10 10 C 1.53002 * 109.46966 * 184.30002 * 9 8 6 11 11 C 1.50692 * 115.55264 * 294.82711 * 10 9 8 12 12 H 1.08002 * 120.00186 * 92.40597 * 11 10 9 13 13 C 1.37883 * 120.00239 * 272.40210 * 11 10 9 14 14 N 1.31514 * 119.99919 * 183.36092 * 13 11 10 15 15 Si 1.86797 * 119.99844 * 3.36723 * 13 11 10 16 16 H 1.48503 * 109.46991 * 265.50419 * 15 13 11 17 17 H 1.48493 * 109.47415 * 145.50666 * 15 13 11 18 18 H 1.48500 * 109.47408 * 25.50118 * 15 13 11 19 19 C 1.53002 * 117.49904 * 80.50181 * 10 9 8 20 20 C 1.53008 * 117.49436 * 149.15809 * 10 9 8 21 21 C 1.50536 * 108.86060 * 282.77418 * 6 5 4 22 22 C 1.47945 * 110.99745 * 127.40040 * 2 1 3 23 23 H 1.08997 * 109.46644 * 56.04768 * 1 2 3 24 24 H 1.08995 * 109.47233 * 176.05357 * 1 2 3 25 25 H 1.08998 * 109.47155 * 296.05157 * 1 2 3 26 26 H 1.08994 * 109.70038 * 101.64004 * 3 2 1 27 27 H 1.09000 * 109.72495 * 341.06522 * 3 2 1 28 28 H 1.08995 * 108.84177 * 157.77019 * 4 3 2 29 29 H 1.09001 * 108.76053 * 39.35347 * 4 3 2 30 30 H 1.09003 * 109.03844 * 300.92978 * 5 4 3 31 31 H 1.09000 * 108.97972 * 182.02083 * 5 4 3 32 32 H 1.00903 * 111.00178 * 82.29799 * 8 6 5 33 33 H 1.08998 * 109.47125 * 64.30630 * 9 8 6 34 34 H 1.08991 * 109.47301 * 304.30282 * 9 8 6 35 35 H 0.97005 * 119.99430 * 180.02562 * 14 13 11 36 36 H 1.08996 * 117.50294 * 215.00544 * 19 10 9 37 37 H 1.09007 * 117.49362 * 0.02562 * 19 10 9 38 38 H 1.08996 * 117.50202 * 359.97438 * 20 10 9 39 39 H 1.08999 * 117.49664 * 144.97701 * 20 10 9 40 40 H 1.09000 * 108.78840 * 212.63600 * 21 6 5 41 41 H 1.08993 * 108.78933 * 330.85448 * 21 6 5 42 42 H 1.08997 * 108.71168 * 313.18313 * 22 2 1 43 43 H 1.09000 * 108.70758 * 71.32200 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9862 1.3472 0.0000 4 6 3.1841 1.4055 -0.9658 5 6 4.4182 0.9164 -0.3609 6 6 4.2993 -0.5657 0.0597 7 1 3.7908 -1.1278 -0.7236 8 7 5.6403 -1.1252 0.2755 9 6 5.6451 -2.5785 0.0613 10 6 7.0283 -3.1390 0.3983 11 6 8.1514 -2.6786 -0.4947 12 1 8.7344 -1.8104 -0.2252 13 6 8.4348 -3.3659 -1.6560 14 7 9.4562 -3.0044 -2.4015 15 14 7.3680 -4.8104 -2.1704 16 1 7.9759 -6.0738 -1.6810 17 1 7.2690 -4.8501 -3.6515 18 1 6.0109 -4.6559 -1.5875 19 6 7.3526 -3.3799 1.8740 20 6 7.0983 -4.5674 0.9422 21 6 3.5074 -0.6469 1.3373 22 6 1.9992 -0.8389 1.0972 23 1 -0.3632 0.5740 -0.8524 24 1 -0.3633 -1.0252 -0.0707 25 1 -0.3633 0.4513 0.9232 26 1 2.3111 1.6160 1.0050 27 1 1.2120 2.0384 -0.3329 28 1 3.3319 2.4383 -1.2813 29 1 2.9574 0.7989 -1.8426 30 1 4.6460 1.5185 0.5187 31 1 5.2303 1.0177 -1.0809 32 1 5.9848 -0.8941 1.1953 33 1 5.4104 -2.7929 -0.9812 34 1 4.8982 -3.0430 0.7049 35 1 9.6553 -3.4877 -3.2186 36 1 8.3782 -3.2053 2.1990 37 1 6.5803 -3.1395 2.6048 38 1 6.1590 -5.1076 1.0603 39 1 7.9566 -5.1742 0.6537 40 1 3.8783 -1.4849 1.9276 41 1 3.6585 0.2723 1.9031 42 1 1.4649 -0.5930 2.0149 43 1 1.8158 -1.8861 0.8566 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381694552.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:24 Heat of formation + Delta-G solvation = 10.784481 kcal Electronic energy + Delta-G solvation = -19607.832221 eV Core-core repulsion = 16880.685567 eV Total energy + Delta-G solvation = -2727.146654 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.42161 -38.89443 -36.60673 -34.24052 -34.03023 -32.03928 -28.64116 -27.80911 -26.39223 -25.23769 -24.18048 -23.20917 -21.44916 -20.75345 -20.58105 -18.24572 -17.15149 -16.85653 -16.69950 -16.08351 -15.84199 -15.16768 -15.07220 -14.89694 -14.72260 -14.39653 -14.11286 -13.89269 -13.65286 -13.42006 -13.01710 -12.74639 -12.60896 -12.37250 -12.20111 -12.09006 -11.96011 -11.78273 -11.62990 -11.53616 -11.34354 -11.20768 -10.86054 -10.53106 -10.22553 -9.13691 -8.95465 -8.19774 -6.21882 1.36578 1.40341 1.52660 2.43256 2.99808 3.08961 3.16169 3.51493 3.82108 4.01835 4.12997 4.16724 4.20298 4.26970 4.38955 4.43311 4.49385 4.55315 4.57484 4.61422 4.69371 4.79078 4.82764 4.85786 4.87065 4.89831 5.03754 5.07280 5.10980 5.21676 5.25051 5.29756 5.43872 5.49735 5.57697 5.58585 5.80019 6.18729 6.34572 6.38079 6.50293 6.78259 6.84685 7.44347 8.97023 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.026598 B = 0.005668 C = 0.005478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.476698 B = 4938.456264 C = 5110.099824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.571 5.571 3 C 0.067 3.933 4 C -0.108 4.108 5 C -0.100 4.100 6 C 0.099 3.901 7 H 0.062 0.938 8 N -0.683 5.683 9 C 0.116 3.884 10 C -0.022 4.022 11 C -0.455 4.455 12 H 0.029 0.971 13 C 0.014 3.986 14 N -0.957 5.957 15 Si 0.938 3.062 16 H -0.274 1.274 17 H -0.302 1.302 18 H -0.234 1.234 19 C -0.163 4.163 20 C -0.198 4.198 21 C -0.140 4.140 22 C 0.072 3.928 23 H 0.075 0.925 24 H 0.066 0.934 25 H 0.030 0.970 26 H 0.044 0.956 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.338 0.662 33 H 0.041 0.959 34 H 0.026 0.974 35 H 0.261 0.739 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.042 0.958 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.682 5.698 8.370 22.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.296 5.296 3 C -0.061 4.061 4 C -0.147 4.147 5 C -0.138 4.138 6 C -0.011 4.011 7 H 0.080 0.920 8 N -0.313 5.313 9 C -0.014 4.014 10 C -0.023 4.023 11 C -0.493 4.493 12 H 0.047 0.953 13 C -0.182 4.182 14 N -0.598 5.598 15 Si 0.764 3.236 16 H -0.200 1.200 17 H -0.230 1.230 18 H -0.157 1.157 19 C -0.200 4.200 20 C -0.236 4.236 21 C -0.179 4.179 22 C -0.056 4.056 23 H 0.094 0.906 24 H 0.085 0.915 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.157 0.843 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.060 0.940 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.215 5.605 7.173 21.262 hybrid contribution -0.278 -0.643 0.759 1.033 sum -19.493 4.962 7.932 21.622 Atomic orbital electron populations 1.22404 0.85841 1.02477 1.00881 1.60666 1.08406 1.13798 1.46762 1.21809 0.97023 0.88793 0.98498 1.20435 0.94173 1.01037 0.99033 1.20479 0.98014 0.94626 1.00702 1.21246 0.87301 0.95893 0.96634 0.91988 1.60277 1.23738 1.11770 1.35539 1.21422 0.93883 0.87487 0.98559 1.19394 0.94095 0.95058 0.93796 1.20303 1.12836 1.11258 1.04899 0.95295 1.25762 0.95857 1.00225 0.96334 1.70063 1.30395 1.43558 1.15823 0.85902 0.81820 0.79721 0.76196 1.19977 1.22959 1.15720 1.22822 1.01438 1.02477 0.93236 1.23010 1.01864 0.91910 1.06800 1.22110 0.95031 1.02376 0.98396 1.22251 0.93978 0.97500 0.91849 0.90611 0.91495 0.95108 0.93746 0.90077 0.90893 0.92752 0.92223 0.93540 0.84338 0.94045 0.95587 0.93032 0.90648 0.87888 0.88301 0.91111 0.91620 0.91375 0.93959 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.30 127.69 1.19 1.68 16 2 N -0.57 -11.81 4.25 -922.47 -3.92 -15.74 16 3 C 0.07 1.28 5.41 87.12 0.47 1.75 16 4 C -0.11 -2.48 5.38 28.74 0.15 -2.32 16 5 C -0.10 -2.78 4.97 28.93 0.14 -2.63 16 6 C 0.10 2.99 2.18 44.64 0.10 3.08 16 7 H 0.06 2.11 7.49 -2.39 -0.02 2.09 16 8 N -0.68 -25.34 6.13 -493.05 -3.02 -28.36 16 9 C 0.12 4.65 4.82 86.30 0.42 5.07 16 10 C -0.02 -1.01 0.89 -52.93 -0.05 -1.06 16 11 C -0.45 -26.22 9.32 25.60 0.24 -25.98 16 12 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 13 C 0.01 0.82 5.47 84.66 0.46 1.29 16 14 N -0.96 -61.81 13.96 21.45 0.30 -61.51 16 15 Si 0.94 46.01 24.96 68.60 1.71 47.72 16 16 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 17 H -0.30 -15.04 7.11 99.48 0.71 -14.34 16 18 H -0.23 -10.45 5.64 99.48 0.56 -9.89 16 19 C -0.16 -6.19 9.96 30.62 0.30 -5.88 16 20 C -0.20 -7.98 7.59 30.62 0.23 -7.75 16 21 C -0.14 -3.30 4.64 30.11 0.14 -3.16 16 22 C 0.07 1.50 5.44 86.41 0.47 1.97 16 23 H 0.08 1.05 7.98 -2.39 -0.02 1.04 16 24 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 25 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.04 0.83 6.79 -2.39 -0.02 0.82 16 27 H 0.08 1.26 7.51 -2.39 -0.02 1.25 16 28 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.05 1.42 8.08 -2.39 -0.02 1.40 16 30 H 0.06 1.51 7.59 -2.39 -0.02 1.49 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.34 11.77 8.36 -89.69 -0.75 11.02 16 33 H 0.04 1.86 6.62 -2.39 -0.02 1.85 16 34 H 0.03 0.92 7.48 -2.39 -0.02 0.90 16 35 H 0.26 15.91 8.31 -92.70 -0.77 15.14 16 36 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 37 H 0.10 3.19 8.14 -2.38 -0.02 3.17 16 38 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 39 H 0.07 3.09 7.32 -2.39 -0.02 3.07 16 40 H 0.07 1.57 7.28 -2.39 -0.02 1.56 16 41 H 0.07 1.48 6.66 -2.39 -0.02 1.47 16 42 H 0.04 0.77 8.02 -2.39 -0.02 0.75 16 43 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -66.69 323.20 -0.60 -67.29 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: 0.06 Total: 24.53 kcal Atomic # 6 Polarization: -38.21 SS G_CDS: 4.27 Total: -33.94 kcal Atomic # 7 Polarization: -98.96 SS G_CDS: -6.65 Total: -105.60 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.71 Total: 47.72 kcal Total: -66.69 -0.60 -67.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381694552.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.071 kcal (2) G-P(sol) polarization free energy of solvation -66.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds