Wall clock time and date at job start Mon Mar 30 2020 04:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47996 * 111.00069 * 2 1 4 4 C 1.50448 * 112.82635 * 191.34097 * 3 2 1 5 5 C 1.54305 * 108.49749 * 93.72817 * 4 3 2 6 6 C 1.45880 * 112.18739 * 281.46541 * 5 4 3 7 7 H 1.09004 * 108.93812 * 300.51493 * 6 5 4 8 8 N 1.46898 * 108.94105 * 181.82072 * 6 5 4 9 9 C 1.46896 * 111.00437 * 154.99566 * 8 6 5 10 10 C 1.53001 * 109.47283 * 184.67673 * 9 8 6 11 11 C 1.50698 * 115.56083 * 38.62449 * 10 9 8 12 12 H 1.08003 * 120.00243 * 260.37891 * 11 10 9 13 13 C 1.37875 * 119.99815 * 80.38007 * 11 10 9 14 14 N 1.31515 * 120.00123 * 351.13722 * 13 11 10 15 15 Si 1.86798 * 120.00165 * 171.13539 * 13 11 10 16 16 H 1.48507 * 109.47107 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47305 * 119.99890 * 15 13 11 18 18 H 1.48497 * 109.47217 * 240.00289 * 15 13 11 19 19 C 1.52998 * 117.49778 * 184.31920 * 10 9 8 20 20 C 1.53000 * 60.00204 * 107.48997 * 19 10 9 21 21 C 1.54305 * 112.18647 * 61.12065 * 6 5 4 22 22 C 1.48000 * 110.99935 * 231.27451 * 2 1 3 23 23 H 1.09001 * 109.46730 * 63.95550 * 1 2 3 24 24 H 1.09004 * 109.47069 * 183.95005 * 1 2 3 25 25 H 1.08992 * 109.47470 * 303.95357 * 1 2 3 26 26 H 1.09002 * 108.81143 * 70.47696 * 3 2 1 27 27 H 1.08995 * 108.81423 * 312.20564 * 3 2 1 28 28 H 1.08999 * 109.62909 * 334.02706 * 4 3 2 29 29 H 1.08995 * 109.63355 * 213.43472 * 4 3 2 30 30 H 1.08999 * 108.93750 * 160.77038 * 5 4 3 31 31 H 1.09000 * 108.93733 * 42.16237 * 5 4 3 32 32 H 1.00901 * 110.99794 * 278.95624 * 8 6 5 33 33 H 1.09008 * 109.46851 * 64.67774 * 9 8 6 34 34 H 1.08996 * 109.47206 * 304.68119 * 9 8 6 35 35 H 0.97000 * 120.00210 * 180.02562 * 14 13 11 36 36 H 1.09004 * 117.49927 * 359.97438 * 19 10 9 37 37 H 1.08997 * 117.49683 * 214.97916 * 19 10 9 38 38 H 1.08997 * 117.49978 * 107.49347 * 20 19 10 39 39 H 1.09001 * 117.49204 * 252.50728 * 20 19 10 40 40 H 1.08998 * 109.63788 * 41.16631 * 21 6 5 41 41 H 1.08999 * 109.63233 * 161.76589 * 21 6 5 42 42 H 1.09002 * 108.81145 * 205.69998 * 22 2 1 43 43 H 1.08996 * 108.81728 * 323.97940 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9994 1.3817 0.0000 4 6 3.4778 1.4393 -0.2727 5 6 3.6885 1.6558 -1.7859 6 6 3.5146 0.4242 -2.5481 7 1 4.2344 -0.3146 -2.1955 8 7 3.7730 0.7012 -3.9674 9 6 4.1944 -0.5162 -4.6733 10 6 4.5655 -0.1666 -6.1159 11 6 5.2933 1.1398 -6.3017 12 1 4.7533 2.0176 -6.6247 13 6 6.6486 1.2144 -6.0595 14 7 7.2738 0.2004 -5.5022 15 14 7.5968 2.7556 -6.5229 16 1 6.6691 3.7439 -7.1297 17 1 8.2157 3.3406 -5.3064 18 1 8.6591 2.4081 -7.5006 19 6 4.9359 -1.3208 -7.0494 20 6 3.5974 -0.5991 -7.2190 21 6 2.0922 -0.1557 -2.4019 22 6 1.9994 -0.8644 -1.0779 23 1 -0.3633 0.4512 -0.9233 24 1 -0.3633 -1.0253 0.0708 25 1 -0.3634 0.5739 0.8524 26 1 1.8035 1.8334 0.9725 27 1 1.4783 1.9582 -0.7642 28 1 3.9431 0.5016 0.0314 29 1 3.9203 2.2674 0.2809 30 1 4.6967 2.0353 -1.9520 31 1 2.9709 2.3956 -2.1406 32 1 2.9645 1.1135 -4.4083 33 1 3.3772 -1.2376 -4.6729 34 1 5.0596 -0.9471 -4.1697 35 1 8.2272 0.2530 -5.3315 36 1 4.9155 -2.3291 -6.6358 37 1 5.7060 -1.1352 -7.7980 38 1 3.4871 0.0611 -8.0791 39 1 2.6962 -1.1328 -6.9170 40 1 1.3618 0.6525 -2.4365 41 1 1.8998 -0.8620 -3.2095 42 1 2.9933 -1.2103 -0.7941 43 1 1.3463 -1.7301 -1.1877 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381694575.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:28 Heat of formation + Delta-G solvation = 29.916228 kcal Electronic energy + Delta-G solvation = -19650.026354 eV Core-core repulsion = 16923.709315 eV Total energy + Delta-G solvation = -2726.317039 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.43123 -36.88182 -35.17327 -32.69890 -31.76396 -30.65660 -27.70000 -25.53074 -24.69133 -24.44373 -22.72799 -21.08500 -20.18521 -19.58064 -18.89202 -16.20293 -15.88224 -15.73122 -14.94347 -14.45214 -14.34336 -14.02401 -13.62091 -13.12982 -13.09578 -12.96393 -12.61332 -12.21571 -12.04086 -11.79452 -11.56735 -11.36793 -11.15362 -10.90572 -10.72185 -10.67518 -10.52552 -10.39117 -10.36844 -10.10174 -10.04790 -9.37370 -8.73175 -8.27250 -8.21399 -7.98411 -7.29018 -5.86906 -3.85841 3.38115 3.46255 3.49913 3.89191 4.54744 4.78262 4.85018 4.97071 5.16157 5.29682 5.36590 5.40192 5.42518 5.45392 5.50325 5.63555 5.72084 5.77135 5.87816 5.93399 6.00379 6.07624 6.11083 6.21650 6.31687 6.36650 6.43930 6.57639 6.59279 6.69780 6.76269 6.80748 7.02718 7.08649 7.13052 7.15671 7.47945 7.54383 8.05234 8.15119 8.35985 8.63323 9.09320 9.76110 11.24155 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.025568 B = 0.005863 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.861539 B = 4774.898670 C = 5486.440499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.555 5.555 3 C 0.065 3.935 4 C -0.121 4.121 5 C -0.108 4.108 6 C 0.093 3.907 7 H 0.069 0.931 8 N -0.652 5.652 9 C 0.113 3.887 10 C 0.051 3.949 11 C -0.463 4.463 12 H 0.056 0.944 13 C 0.075 3.925 14 N -0.882 5.882 15 Si 0.884 3.116 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.288 1.288 19 C -0.166 4.166 20 C -0.218 4.218 21 C -0.179 4.179 22 C 0.064 3.936 23 H 0.022 0.978 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.033 0.967 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.328 0.672 33 H -0.010 1.010 34 H 0.071 0.929 35 H 0.254 0.746 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.583 -0.475 9.654 14.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.281 5.281 3 C -0.062 4.062 4 C -0.159 4.159 5 C -0.146 4.146 6 C -0.018 4.018 7 H 0.087 0.913 8 N -0.279 5.279 9 C -0.016 4.016 10 C 0.050 3.950 11 C -0.501 4.501 12 H 0.074 0.926 13 C -0.127 4.127 14 N -0.519 5.519 15 Si 0.713 3.287 16 H -0.200 1.200 17 H -0.213 1.213 18 H -0.214 1.214 19 C -0.204 4.204 20 C -0.255 4.255 21 C -0.220 4.220 22 C -0.064 4.064 23 H 0.041 0.959 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.051 0.949 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.146 0.854 33 H 0.008 0.992 34 H 0.089 0.911 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.576 -0.501 10.220 14.014 hybrid contribution -0.561 0.568 -1.122 1.377 sum -10.137 0.067 9.097 13.621 Atomic orbital electron populations 1.22312 0.87867 1.01725 1.00055 1.61924 1.06957 1.12833 1.46339 1.21793 0.95884 0.88223 1.00346 1.21414 0.95061 1.02586 0.96866 1.20545 1.03192 0.97983 0.92844 1.20552 0.93166 0.96783 0.91266 0.91267 1.60436 1.39223 1.28772 0.99501 1.21455 0.96216 0.88211 0.95749 1.18937 0.95166 0.94779 0.86132 1.20155 0.92043 0.93336 1.44570 0.92631 1.24819 0.97637 0.95596 0.94613 1.70012 1.09095 1.30908 1.41905 0.86676 0.80008 0.84026 0.78011 1.19983 1.21297 1.21445 1.22546 0.96425 0.96064 1.05341 1.23051 0.92633 1.05485 1.04380 1.22703 1.00114 1.00799 0.98416 1.21820 1.00984 0.94947 0.88681 0.95908 0.91704 0.91848 0.91643 0.94866 0.90876 0.91196 0.90676 0.92703 0.85433 0.99226 0.91102 0.93587 0.92143 0.90291 0.90639 0.92169 0.92198 0.91543 0.90750 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.41 60.06 0.56 0.86 16 2 N -0.56 -6.74 4.94 -244.20 -1.21 -7.95 16 3 C 0.06 0.76 4.99 -4.49 -0.02 0.74 16 4 C -0.12 -1.52 5.63 -27.32 -0.15 -1.68 16 5 C -0.11 -1.64 4.81 -29.42 -0.14 -1.78 16 6 C 0.09 1.53 1.99 -70.40 -0.14 1.39 16 7 H 0.07 1.24 7.08 -51.93 -0.37 0.87 16 8 N -0.65 -13.09 5.43 -109.60 -0.59 -13.69 16 9 C 0.11 2.50 5.54 -3.83 -0.02 2.47 16 10 C 0.05 1.23 1.65 -155.66 -0.26 0.97 16 11 C -0.46 -12.51 8.10 -34.44 -0.28 -12.79 16 12 H 0.06 1.53 7.83 -52.48 -0.41 1.12 16 13 C 0.08 2.08 5.41 -17.82 -0.10 1.98 16 14 N -0.88 -25.17 13.20 55.43 0.73 -24.44 16 15 Si 0.88 21.58 29.55 -169.99 -5.02 16.56 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 C -0.17 -3.90 9.80 -26.73 -0.26 -4.16 16 20 C -0.22 -4.76 9.88 -26.73 -0.26 -5.02 16 21 C -0.18 -2.53 4.91 -27.32 -0.13 -2.66 16 22 C 0.06 0.81 5.16 -4.49 -0.02 0.79 16 23 H 0.02 0.24 7.79 -51.93 -0.40 -0.17 16 24 H 0.06 0.61 7.94 -51.93 -0.41 0.20 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.03 0.41 6.48 -51.93 -0.34 0.07 16 28 H 0.07 0.97 7.08 -51.93 -0.37 0.60 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.05 0.83 7.52 -51.93 -0.39 0.43 16 32 H 0.33 6.40 8.56 -39.29 -0.34 6.06 16 33 H -0.01 -0.21 6.99 -51.92 -0.36 -0.57 16 34 H 0.07 1.75 7.93 -51.93 -0.41 1.34 16 35 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.08 1.97 8.14 -51.93 -0.42 1.54 16 38 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 39 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 40 H 0.06 0.84 6.66 -51.93 -0.35 0.50 16 41 H 0.07 0.99 7.06 -51.93 -0.37 0.63 16 42 H 0.07 1.00 6.58 -51.93 -0.34 0.66 16 43 H 0.06 0.74 7.72 -51.93 -0.40 0.33 16 LS Contribution 328.32 15.07 4.95 4.95 Total: -1.00 -27.91 328.32 -10.14 -38.06 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -7.77 Total: 5.39 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: -1.23 Total: -18.88 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: -1.07 Total: -46.08 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.91 -10.14 -38.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381694575.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.974 kcal (2) G-P(sol) polarization free energy of solvation -27.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds