Wall clock time and date at job start Mon Mar 30 2020 04:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47996 * 111.00069 * 2 1 4 4 C 1.50448 * 112.82635 * 191.34097 * 3 2 1 5 5 C 1.54305 * 108.49749 * 93.72817 * 4 3 2 6 6 C 1.45880 * 112.18739 * 281.46541 * 5 4 3 7 7 H 1.09004 * 108.93812 * 300.51493 * 6 5 4 8 8 N 1.46898 * 108.94105 * 181.82072 * 6 5 4 9 9 C 1.46896 * 111.00437 * 154.99566 * 8 6 5 10 10 C 1.53001 * 109.47283 * 184.67673 * 9 8 6 11 11 C 1.50698 * 115.56083 * 38.62449 * 10 9 8 12 12 H 1.08003 * 120.00243 * 260.37891 * 11 10 9 13 13 C 1.37875 * 119.99815 * 80.38007 * 11 10 9 14 14 N 1.31515 * 120.00123 * 351.13722 * 13 11 10 15 15 Si 1.86798 * 120.00165 * 171.13539 * 13 11 10 16 16 H 1.48507 * 109.47107 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47305 * 119.99890 * 15 13 11 18 18 H 1.48497 * 109.47217 * 240.00289 * 15 13 11 19 19 C 1.52998 * 117.49778 * 184.31920 * 10 9 8 20 20 C 1.53000 * 60.00204 * 107.48997 * 19 10 9 21 21 C 1.54305 * 112.18647 * 61.12065 * 6 5 4 22 22 C 1.48000 * 110.99935 * 231.27451 * 2 1 3 23 23 H 1.09001 * 109.46730 * 63.95550 * 1 2 3 24 24 H 1.09004 * 109.47069 * 183.95005 * 1 2 3 25 25 H 1.08992 * 109.47470 * 303.95357 * 1 2 3 26 26 H 1.09002 * 108.81143 * 70.47696 * 3 2 1 27 27 H 1.08995 * 108.81423 * 312.20564 * 3 2 1 28 28 H 1.08999 * 109.62909 * 334.02706 * 4 3 2 29 29 H 1.08995 * 109.63355 * 213.43472 * 4 3 2 30 30 H 1.08999 * 108.93750 * 160.77038 * 5 4 3 31 31 H 1.09000 * 108.93733 * 42.16237 * 5 4 3 32 32 H 1.00901 * 110.99794 * 278.95624 * 8 6 5 33 33 H 1.09008 * 109.46851 * 64.67774 * 9 8 6 34 34 H 1.08996 * 109.47206 * 304.68119 * 9 8 6 35 35 H 0.97000 * 120.00210 * 180.02562 * 14 13 11 36 36 H 1.09004 * 117.49927 * 359.97438 * 19 10 9 37 37 H 1.08997 * 117.49683 * 214.97916 * 19 10 9 38 38 H 1.08997 * 117.49978 * 107.49347 * 20 19 10 39 39 H 1.09001 * 117.49204 * 252.50728 * 20 19 10 40 40 H 1.08998 * 109.63788 * 41.16631 * 21 6 5 41 41 H 1.08999 * 109.63233 * 161.76589 * 21 6 5 42 42 H 1.09002 * 108.81145 * 205.69998 * 22 2 1 43 43 H 1.08996 * 108.81728 * 323.97940 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9994 1.3817 0.0000 4 6 3.4778 1.4393 -0.2727 5 6 3.6885 1.6558 -1.7859 6 6 3.5146 0.4242 -2.5481 7 1 4.2344 -0.3146 -2.1955 8 7 3.7730 0.7012 -3.9674 9 6 4.1944 -0.5162 -4.6733 10 6 4.5655 -0.1666 -6.1159 11 6 5.2933 1.1398 -6.3017 12 1 4.7533 2.0176 -6.6247 13 6 6.6486 1.2144 -6.0595 14 7 7.2738 0.2004 -5.5022 15 14 7.5968 2.7556 -6.5229 16 1 6.6691 3.7439 -7.1297 17 1 8.2157 3.3406 -5.3064 18 1 8.6591 2.4081 -7.5006 19 6 4.9359 -1.3208 -7.0494 20 6 3.5974 -0.5991 -7.2190 21 6 2.0922 -0.1557 -2.4019 22 6 1.9994 -0.8644 -1.0779 23 1 -0.3633 0.4512 -0.9233 24 1 -0.3633 -1.0253 0.0708 25 1 -0.3634 0.5739 0.8524 26 1 1.8035 1.8334 0.9725 27 1 1.4783 1.9582 -0.7642 28 1 3.9431 0.5016 0.0314 29 1 3.9203 2.2674 0.2809 30 1 4.6967 2.0353 -1.9520 31 1 2.9709 2.3956 -2.1406 32 1 2.9645 1.1135 -4.4083 33 1 3.3772 -1.2376 -4.6729 34 1 5.0596 -0.9471 -4.1697 35 1 8.2272 0.2530 -5.3315 36 1 4.9155 -2.3291 -6.6358 37 1 5.7060 -1.1352 -7.7980 38 1 3.4871 0.0611 -8.0791 39 1 2.6962 -1.1328 -6.9170 40 1 1.3618 0.6525 -2.4365 41 1 1.8998 -0.8620 -3.2095 42 1 2.9933 -1.2103 -0.7941 43 1 1.3463 -1.7301 -1.1877 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381694575.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:27 Heat of formation + Delta-G solvation = 12.680618 kcal Electronic energy + Delta-G solvation = -19650.773746 eV Core-core repulsion = 16923.709315 eV Total energy + Delta-G solvation = -2727.064431 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.60123 -38.59588 -36.51343 -33.93004 -33.80368 -31.93549 -28.83101 -27.47716 -26.16621 -25.48194 -24.08193 -22.90572 -21.55875 -20.77784 -20.57464 -17.98195 -17.14839 -16.80891 -16.62619 -16.19892 -15.58257 -15.52315 -15.07784 -14.60498 -14.35525 -14.17085 -14.04690 -13.42231 -13.36628 -13.23116 -13.03272 -12.88953 -12.67897 -12.56205 -12.32560 -12.16966 -11.98834 -11.78843 -11.74817 -11.63287 -11.40702 -11.15950 -10.66953 -10.31972 -9.87807 -9.19184 -8.81689 -7.97693 -6.00765 1.42246 1.45563 1.54625 2.51510 2.96666 3.30970 3.38667 3.57164 3.67591 3.94330 4.08369 4.23718 4.34881 4.38811 4.48219 4.49254 4.54283 4.58297 4.62228 4.72884 4.76013 4.80282 4.83616 4.93320 4.98932 5.01796 5.03310 5.07680 5.17313 5.21744 5.29996 5.31321 5.41926 5.48877 5.62430 5.71560 5.91911 6.17860 6.19568 6.43805 6.63298 6.84484 7.00733 7.63138 9.12562 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.025568 B = 0.005863 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.861539 B = 4774.898670 C = 5486.440499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.562 5.562 3 C 0.066 3.934 4 C -0.112 4.112 5 C -0.102 4.102 6 C 0.097 3.903 7 H 0.049 0.951 8 N -0.669 5.669 9 C 0.131 3.869 10 C 0.020 3.980 11 C -0.467 4.467 12 H 0.045 0.955 13 C 0.030 3.970 14 N -0.910 5.910 15 Si 0.938 3.062 16 H -0.270 1.270 17 H -0.288 1.288 18 H -0.286 1.286 19 C -0.173 4.173 20 C -0.190 4.190 21 C -0.163 4.163 22 C 0.067 3.933 23 H 0.020 0.980 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.031 0.969 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.332 0.668 33 H 0.007 0.993 34 H 0.036 0.964 35 H 0.252 0.748 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.379 -0.123 10.411 16.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.287 5.287 3 C -0.061 4.061 4 C -0.150 4.150 5 C -0.140 4.140 6 C -0.013 4.013 7 H 0.068 0.932 8 N -0.298 5.298 9 C 0.001 3.999 10 C 0.020 3.980 11 C -0.505 4.505 12 H 0.063 0.937 13 C -0.169 4.169 14 N -0.549 5.549 15 Si 0.766 3.234 16 H -0.195 1.195 17 H -0.215 1.215 18 H -0.213 1.213 19 C -0.211 4.211 20 C -0.227 4.227 21 C -0.203 4.203 22 C -0.061 4.061 23 H 0.039 0.961 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.049 0.951 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.150 0.850 33 H 0.025 0.975 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.390 -0.141 10.978 15.820 hybrid contribution -0.029 0.464 -1.361 1.438 sum -11.419 0.323 9.616 14.932 Atomic orbital electron populations 1.22384 0.86454 1.02620 1.00542 1.61956 1.08250 1.12809 1.45690 1.21786 0.94816 0.88237 1.01233 1.21346 0.96143 1.02842 0.94674 1.20481 1.01514 0.97222 0.94833 1.20550 0.94424 0.97040 0.89249 0.93238 1.60354 1.39946 1.28323 1.01147 1.21103 0.95396 0.89182 0.94200 1.19098 0.96923 0.94130 0.87881 1.20353 0.92325 0.94147 1.43647 0.93653 1.25426 0.98584 0.97954 0.94896 1.70120 1.09038 1.32503 1.43211 0.85822 0.78817 0.81260 0.77518 1.19471 1.21456 1.21266 1.22474 0.97288 0.96490 1.04877 1.23037 0.92612 1.04204 1.02857 1.22501 0.97989 1.00677 0.99161 1.21743 1.00931 0.95415 0.88036 0.96119 0.90818 0.90491 0.89870 0.95103 0.91619 0.89643 0.93513 0.92376 0.85001 0.97473 0.94543 0.93885 0.91096 0.92428 0.90524 0.89384 0.91714 0.92136 0.91817 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.41 127.69 1.20 1.69 16 2 N -0.56 -12.28 4.94 -926.52 -4.57 -16.85 16 3 C 0.07 1.41 4.99 85.27 0.43 1.83 16 4 C -0.11 -2.67 5.63 30.21 0.17 -2.50 16 5 C -0.10 -3.10 4.81 28.85 0.14 -2.96 16 6 C 0.10 3.21 1.99 43.18 0.09 3.29 16 7 H 0.05 1.82 7.08 -2.38 -0.02 1.81 16 8 N -0.67 -26.97 5.43 -500.66 -2.72 -29.69 16 9 C 0.13 5.80 5.54 86.30 0.48 6.28 16 10 C 0.02 0.99 1.65 -52.93 -0.09 0.90 16 11 C -0.47 -25.35 8.10 25.60 0.21 -25.14 16 12 H 0.05 2.50 7.83 -2.91 -0.02 2.48 16 13 C 0.03 1.69 5.41 84.65 0.46 2.15 16 14 N -0.91 -53.00 13.20 21.45 0.28 -52.72 16 15 Si 0.94 44.77 29.55 68.60 2.03 46.80 16 16 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 17 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 18 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 19 C -0.17 -8.11 9.80 30.59 0.30 -7.81 16 20 C -0.19 -7.96 9.88 30.60 0.30 -7.66 16 21 C -0.16 -4.36 4.91 30.21 0.15 -4.21 16 22 C 0.07 1.59 5.16 85.27 0.44 2.03 16 23 H 0.02 0.37 7.79 -2.39 -0.02 0.35 16 24 H 0.07 1.16 7.94 -2.38 -0.02 1.14 16 25 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.03 0.68 6.48 -2.39 -0.02 0.67 16 28 H 0.07 1.69 7.08 -2.39 -0.02 1.67 16 29 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.06 1.70 7.52 -2.39 -0.02 1.69 16 32 H 0.33 12.76 8.56 -89.69 -0.77 11.99 16 33 H 0.01 0.30 6.99 -2.38 -0.02 0.28 16 34 H 0.04 1.85 7.93 -2.39 -0.02 1.83 16 35 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 36 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 38 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 39 H 0.09 3.20 8.08 -2.39 -0.02 3.18 16 40 H 0.06 1.69 6.66 -2.39 -0.02 1.67 16 41 H 0.06 1.71 7.06 -2.39 -0.02 1.69 16 42 H 0.06 1.66 6.58 -2.39 -0.02 1.65 16 43 H 0.07 1.61 7.72 -2.39 -0.02 1.59 16 Total: -1.00 -59.38 328.32 -0.51 -59.90 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.20 Total: 24.66 kcal Atomic # 6 Polarization: -36.36 SS G_CDS: 4.27 Total: -32.09 kcal Atomic # 7 Polarization: -92.25 SS G_CDS: -7.01 Total: -99.26 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -59.38 -0.51 -59.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381694575.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.578 kcal (2) G-P(sol) polarization free energy of solvation -59.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds