Wall clock time and date at job start Mon Mar 30 2020 03:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46844 * 111.00120 * 2 1 4 4 C 1.50142 * 110.33358 * 287.33538 * 3 2 1 5 5 C 1.29823 * 123.28386 * 343.43125 * 4 3 2 6 6 C 1.50699 * 118.55301 * 180.10566 * 5 4 3 7 7 N 1.46906 * 109.46990 * 94.73250 * 6 5 4 8 8 C 1.46902 * 110.99573 * 180.02562 * 7 6 5 9 9 C 1.53008 * 109.46622 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.46689 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.46680 * 179.97438 * 10 9 8 12 12 C 1.50704 * 109.46973 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00046 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99968 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00010 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 120.00133 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47632 * 89.99142 * 16 14 12 18 18 H 1.48505 * 109.47133 * 209.99717 * 16 14 12 19 19 H 1.48500 * 109.46879 * 329.99177 * 16 14 12 20 20 C 1.50303 * 122.89192 * 359.82401 * 5 4 3 21 21 C 1.47243 * 110.99930 * 237.07023 * 2 1 3 22 22 H 1.09005 * 109.46927 * 182.93134 * 1 2 3 23 23 H 1.09002 * 109.47137 * 302.92598 * 1 2 3 24 24 H 1.08998 * 109.47381 * 62.93097 * 1 2 3 25 25 H 1.09000 * 109.33421 * 47.78384 * 3 2 1 26 26 H 1.09002 * 109.33816 * 167.45372 * 3 2 1 27 27 H 1.07995 * 118.35484 * 163.18389 * 4 3 2 28 28 H 1.09002 * 109.47064 * 334.73527 * 6 5 4 29 29 H 1.09000 * 109.47099 * 214.73253 * 6 5 4 30 30 H 1.00896 * 111.00309 * 56.04484 * 7 6 5 31 31 H 1.08990 * 109.47358 * 299.99539 * 8 7 6 32 32 H 1.09004 * 109.47457 * 60.00221 * 8 7 6 33 33 H 1.09006 * 109.47203 * 299.99590 * 9 8 7 34 34 H 1.08995 * 109.47152 * 60.00028 * 9 8 7 35 35 H 1.09006 * 109.46807 * 299.99641 * 10 9 8 36 36 H 1.08995 * 109.47458 * 60.00024 * 10 9 8 37 37 H 1.08994 * 109.47433 * 299.99662 * 11 10 9 38 38 H 1.09008 * 109.47445 * 60.00369 * 11 10 9 39 39 H 0.96993 * 120.00438 * 180.02562 * 15 14 12 40 40 H 1.08999 * 109.43107 * 103.86088 * 20 5 4 41 41 H 1.09001 * 109.42929 * 223.75714 * 20 5 4 42 42 H 1.08995 * 109.63573 * 294.88918 * 21 2 1 43 43 H 1.09002 * 109.80468 * 174.37425 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 1.7906 2.0083 -1.3439 5 6 1.5192 1.3329 -2.4189 6 6 1.3368 2.0823 -3.7136 7 7 2.6073 2.1023 -4.4508 8 6 2.4673 2.8268 -5.7211 9 6 3.8080 2.8269 -6.4585 10 6 3.6624 3.5819 -7.7813 11 6 5.0031 3.5826 -8.5183 12 6 4.8596 4.3257 -9.8215 13 1 3.9075 4.7550 -10.0963 14 6 5.9442 4.4585 -10.6624 15 7 5.8191 5.1075 -11.7994 16 14 7.5912 3.7167 -10.1868 17 1 7.6757 2.3268 -10.7029 18 1 8.6877 4.5295 -10.7719 19 1 7.7196 3.7040 -8.7074 20 6 1.3849 -0.1641 -2.4302 21 6 1.9966 -0.7473 -1.1538 22 1 -0.3633 -1.0264 0.0526 23 1 -0.3633 0.5586 0.8626 24 1 -0.3634 0.4676 -0.9151 25 1 1.4794 1.9555 0.7617 26 1 3.0619 1.3481 0.2234 27 1 1.8693 3.0827 -1.4193 28 1 1.0241 3.1045 -3.5007 29 1 0.5751 1.5871 -4.3158 30 1 2.9514 1.1663 -4.6040 31 1 1.7134 2.3372 -6.3374 32 1 2.1626 3.8542 -5.5219 33 1 4.5618 3.3168 -5.8420 34 1 4.1132 1.7996 -6.6577 35 1 2.9085 3.0924 -8.3979 36 1 3.3575 4.6091 -7.5816 37 1 5.7566 4.0723 -7.9015 38 1 5.3086 2.5554 -8.7180 39 1 6.5819 5.2006 -12.3912 40 1 0.3299 -0.4331 -2.4823 41 1 1.9054 -0.5683 -3.2983 42 1 1.7245 -1.7989 -1.0645 43 1 3.0818 -0.6515 -1.1908 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000392749840.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:48 Heat of formation + Delta-G solvation = 0.545869 kcal Electronic energy + Delta-G solvation = -18022.601098 eV Core-core repulsion = 15295.010465 eV Total energy + Delta-G solvation = -2727.590633 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.99381 -36.96817 -34.75548 -33.07982 -31.80561 -31.24839 -29.11230 -27.71683 -25.46881 -24.09250 -23.34016 -21.87269 -21.27603 -20.00252 -17.87067 -16.69077 -16.38710 -16.11404 -15.47295 -15.03168 -14.70631 -14.49046 -14.37880 -14.12097 -13.40651 -13.33159 -12.84110 -12.67279 -12.48584 -12.26186 -12.16832 -11.92876 -11.72416 -11.61116 -11.47150 -11.12319 -10.93223 -10.76517 -10.56658 -9.87069 -9.66931 -9.52622 -9.16728 -9.08677 -8.66950 -8.51214 -8.43869 -6.01794 -3.99405 1.88547 3.32748 3.39967 3.44917 3.65169 4.24096 4.42693 4.47979 4.56914 4.70167 4.80903 4.94445 5.12222 5.16785 5.21443 5.28424 5.32420 5.32903 5.44155 5.45573 5.47404 5.53103 5.56606 5.60060 5.68852 5.80497 6.03133 6.10947 6.22450 6.37190 6.61995 6.63877 6.66754 6.77040 6.78593 6.88844 7.06222 7.31809 7.35926 7.48932 7.83354 8.57412 9.03380 9.61182 11.11838 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.049499 B = 0.002808 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.530462 B = 9969.462070 C =10182.011254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.534 5.534 3 C 0.079 3.921 4 C -0.172 4.172 5 C -0.120 4.120 6 C 0.093 3.907 7 N -0.685 5.685 8 C 0.059 3.941 9 C -0.118 4.118 10 C -0.101 4.101 11 C -0.014 4.014 12 C -0.520 4.520 13 H 0.070 0.930 14 C 0.064 3.936 15 N -0.906 5.906 16 Si 0.881 3.119 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.265 1.265 20 C -0.121 4.121 21 C 0.052 3.948 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.035 0.965 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.111 0.889 28 H 0.074 0.926 29 H 0.031 0.969 30 H 0.338 0.662 31 H 0.027 0.973 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.015 0.985 38 H 0.010 0.990 39 H 0.262 0.738 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.642 -11.065 24.010 28.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.255 5.255 3 C -0.048 4.048 4 C -0.193 4.193 5 C -0.120 4.120 6 C -0.036 4.036 7 N -0.316 5.316 8 C -0.070 4.070 9 C -0.156 4.156 10 C -0.139 4.139 11 C -0.051 4.051 12 C -0.558 4.558 13 H 0.089 0.911 14 C -0.137 4.137 15 N -0.545 5.545 16 Si 0.709 3.291 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.189 1.189 20 C -0.159 4.159 21 C -0.076 4.076 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.053 0.947 25 H 0.101 0.899 26 H 0.106 0.894 27 H 0.129 0.871 28 H 0.093 0.907 29 H 0.049 0.951 30 H 0.156 0.844 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.034 0.966 38 H 0.028 0.972 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.152 -10.696 24.636 28.712 hybrid contribution 0.083 -0.454 -1.362 1.439 sum -10.068 -11.150 23.273 27.701 Atomic orbital electron populations 1.22448 0.87657 1.02018 1.01018 1.62751 1.08222 1.13479 1.41096 1.21127 1.01283 0.88095 0.94342 1.22743 1.00600 1.00588 0.95364 1.20819 1.01478 0.94821 0.94907 1.20994 0.91060 0.99408 0.92135 1.60569 1.27325 1.21878 1.21791 1.22084 0.98047 0.98533 0.88340 1.21671 0.95873 1.00858 0.97171 1.21417 0.99938 0.98952 0.93611 1.19571 0.93205 0.96378 0.95988 1.21191 0.98281 1.34418 1.01900 0.91149 1.25056 0.98967 0.94889 0.94770 1.69919 1.31189 1.42508 1.10887 0.86752 0.83779 0.79250 0.79359 1.20362 1.21427 1.18949 1.21040 1.01810 0.92971 1.00107 1.22263 1.00209 0.97836 0.87323 0.91544 0.91542 0.94670 0.89928 0.89416 0.87146 0.90718 0.95055 0.84394 0.95440 0.91135 0.91632 0.92772 0.93083 0.92811 0.96628 0.97216 0.92800 0.90788 0.90533 0.90307 0.90223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 8.91 60.06 0.54 0.66 16 2 N -0.53 -4.40 5.29 -244.41 -1.29 -5.69 16 3 C 0.08 0.64 5.94 -5.28 -0.03 0.61 16 4 C -0.17 -1.58 9.07 -35.96 -0.33 -1.91 16 5 C -0.12 -1.13 4.77 -100.93 -0.48 -1.61 16 6 C 0.09 0.98 5.73 -4.97 -0.03 0.95 16 7 N -0.68 -8.37 6.49 -115.05 -0.75 -9.12 16 8 C 0.06 0.81 5.69 -3.82 -0.02 0.78 16 9 C -0.12 -1.92 5.48 -26.72 -0.15 -2.06 16 10 C -0.10 -2.03 5.15 -26.73 -0.14 -2.16 16 11 C -0.01 -0.34 4.04 -27.88 -0.11 -0.46 16 12 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 16 13 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 14 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 15 N -0.91 -28.47 13.96 55.43 0.77 -27.70 16 16 Si 0.88 22.20 27.47 -169.99 -4.67 17.54 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 20 C -0.12 -0.98 5.24 -28.03 -0.15 -1.13 16 21 C 0.05 0.40 6.06 -3.59 -0.02 0.38 16 22 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.07 0.43 8.05 -51.93 -0.42 0.01 16 24 H 0.03 0.27 5.68 -51.93 -0.29 -0.03 16 25 H 0.08 0.58 7.98 -51.93 -0.41 0.16 16 26 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.11 1.04 7.81 -52.49 -0.41 0.63 16 28 H 0.07 0.81 7.85 -51.93 -0.41 0.40 16 29 H 0.03 0.33 8.12 -51.93 -0.42 -0.10 16 30 H 0.34 3.90 8.72 -39.29 -0.34 3.56 16 31 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 38 H 0.01 0.23 7.57 -51.92 -0.39 -0.16 16 39 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 40 H 0.07 0.57 6.94 -51.93 -0.36 0.21 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.65 8.09 -51.93 -0.42 0.23 16 LS Contribution 336.90 15.07 5.08 5.08 Total: -1.00 -31.07 336.90 -10.28 -41.34 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -8.07 Total: -1.76 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: -1.35 Total: -19.69 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: -1.27 Total: -42.51 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.07 -10.28 -41.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392749840.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.890 kcal (2) G-P(sol) polarization free energy of solvation -31.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds