Wall clock time and date at job start Mon Mar 30 2020 03:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46848 * 110.99584 * 2 1 4 4 C 1.53040 * 109.52033 * 185.83769 * 3 2 1 5 5 C 1.53114 * 109.27935 * 300.82035 * 4 3 2 6 6 N 1.46901 * 109.52289 * 177.55737 * 5 4 3 7 7 C 1.46905 * 110.99870 * 155.00100 * 6 5 4 8 8 H 1.09004 * 110.43546 * 36.08954 * 7 6 5 9 9 C 1.54260 * 110.48600 * 273.54838 * 7 6 5 10 10 C 1.53880 * 106.59786 * 217.71327 * 9 7 6 11 11 C 1.54260 * 106.59752 * 359.97438 * 10 9 7 12 12 H 1.09001 * 110.48764 * 264.93552 * 11 10 9 13 13 C 1.50703 * 110.48789 * 142.42468 * 11 10 9 14 14 H 1.07995 * 119.99773 * 241.45873 * 13 11 10 15 15 C 1.37870 * 119.99878 * 61.44848 * 13 11 10 16 16 N 1.31520 * 120.00546 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 119.99992 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47053 * 60.00213 * 17 15 13 19 19 H 1.48500 * 109.47096 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47159 * 300.00562 * 17 15 13 21 21 C 1.54888 * 104.19855 * 23.61078 * 11 10 9 22 22 C 1.53119 * 109.16160 * 57.65566 * 5 4 3 23 23 C 1.46837 * 110.99826 * 124.20884 * 2 1 3 24 24 H 1.09005 * 109.46858 * 59.99690 * 1 2 3 25 25 H 1.08993 * 109.46919 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47104 * 299.99995 * 1 2 3 27 27 H 1.09001 * 109.46382 * 65.82778 * 3 2 1 28 28 H 1.09001 * 109.45682 * 305.85031 * 3 2 1 29 29 H 1.09000 * 109.50123 * 180.87970 * 4 3 2 30 30 H 1.08998 * 109.53285 * 60.78454 * 4 3 2 31 31 H 1.08998 * 109.52622 * 297.68685 * 5 4 3 32 32 H 1.00901 * 111.00067 * 278.95276 * 6 5 4 33 33 H 1.08997 * 110.03841 * 336.99469 * 9 7 6 34 34 H 1.09002 * 110.03606 * 98.37803 * 9 7 6 35 35 H 1.08996 * 110.03136 * 119.28992 * 10 9 7 36 36 H 1.09006 * 110.02681 * 240.71368 * 10 9 7 37 37 H 0.96996 * 120.00291 * 180.02562 * 16 15 13 38 38 H 1.08999 * 110.75753 * 203.74210 * 21 11 10 39 39 H 1.08996 * 110.75444 * 80.36725 * 21 11 10 40 40 H 1.09007 * 109.50520 * 62.28172 * 22 5 4 41 41 H 1.08996 * 109.50845 * 182.40411 * 22 5 4 42 42 H 1.09006 * 109.46653 * 294.17650 * 23 2 1 43 43 H 1.08998 * 109.46572 * 54.15531 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 -0.1467 5 6 4.1188 0.5371 1.0144 6 7 5.5756 0.4487 0.8475 7 6 6.2424 0.2469 2.1408 8 1 5.6380 -0.3917 2.7850 9 6 6.5140 1.6022 2.8256 10 6 7.8835 1.4791 3.5163 11 6 8.3960 0.0530 3.2277 12 1 8.1412 -0.6173 4.0485 13 6 9.8857 0.0639 3.0002 14 1 10.2893 -0.2562 2.0510 15 6 10.7332 0.4826 4.0038 16 7 10.2418 0.8721 5.1599 17 14 12.5798 0.4967 3.7216 18 1 12.8998 1.3955 2.5836 19 1 13.2639 0.9847 4.9460 20 1 13.0436 -0.8794 3.4111 21 6 7.6505 -0.3643 1.9357 22 6 3.5182 -0.8714 1.0209 23 6 1.9952 -0.7707 1.1337 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.7325 1.8609 0.9376 28 1 1.5633 1.9256 -0.8331 29 1 3.9098 2.3513 -0.1310 30 1 3.7819 0.8573 -1.0906 31 1 3.8896 1.0361 1.9560 32 1 5.8213 -0.2816 0.1961 33 1 6.5415 2.3979 2.0811 34 1 5.7396 1.8092 3.5643 35 1 8.5755 2.2150 3.1070 36 1 7.7742 1.6259 4.5909 37 1 10.8380 1.1670 5.8658 38 1 7.5928 -1.4499 1.8566 39 1 8.1324 0.0632 1.0565 40 1 3.7814 -1.3835 0.0953 41 1 3.9099 -1.4302 1.8708 42 1 1.7324 -0.2708 2.0660 43 1 1.5636 -1.7715 1.1241 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393279639.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:12 Heat of formation + Delta-G solvation = -17.490489 kcal Electronic energy + Delta-G solvation = -19135.912030 eV Core-core repulsion = 16407.539282 eV Total energy + Delta-G solvation = -2728.372749 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.35959 -37.45491 -34.85427 -32.43408 -30.97020 -30.56875 -28.03473 -26.89946 -25.21528 -23.54089 -23.19183 -22.06678 -20.05684 -19.19415 -18.76875 -16.26178 -16.12377 -15.26128 -15.16752 -14.83831 -14.61905 -14.28385 -14.18217 -13.75734 -13.07520 -12.58963 -12.52196 -12.38873 -12.27429 -11.94160 -11.67157 -11.27565 -11.25907 -10.98888 -10.78537 -10.72989 -10.60044 -10.39065 -10.21320 -9.95460 -9.86297 -9.43246 -9.04211 -8.65120 -8.52436 -8.31579 -7.97439 -5.94737 -3.97219 3.35896 3.40266 3.43091 3.76096 4.40295 4.50291 4.76484 4.78749 4.97507 5.09545 5.22175 5.25725 5.37111 5.37350 5.48996 5.56978 5.60924 5.62711 5.67274 5.71470 5.76083 5.94289 5.99677 6.04097 6.22871 6.27807 6.43649 6.61842 6.71500 6.86157 6.87721 6.91164 6.92985 7.06178 7.26890 7.43557 7.63276 7.76422 7.83750 7.99358 8.09430 8.53281 9.05357 9.66344 11.14886 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.059462 B = 0.003798 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.776161 B = 7369.614277 C = 7394.720623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.056 3.944 4 C -0.103 4.103 5 C 0.087 3.913 6 N -0.677 5.677 7 C 0.080 3.920 8 H 0.037 0.963 9 C -0.114 4.114 10 C -0.094 4.094 11 C 0.051 3.949 12 H 0.025 0.975 13 C -0.512 4.512 14 H 0.054 0.946 15 C 0.061 3.939 16 N -0.891 5.891 17 Si 0.889 3.111 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.115 4.115 22 C -0.146 4.146 23 C 0.060 3.940 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.023 0.977 27 H 0.032 0.968 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.337 0.663 33 H 0.059 0.941 34 H 0.036 0.964 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.259 0.741 38 H 0.042 0.958 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.032 0.968 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.453 -0.848 -8.386 19.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.073 4.073 4 C -0.142 4.142 5 C -0.023 4.023 6 N -0.306 5.306 7 C -0.029 4.029 8 H 0.055 0.945 9 C -0.153 4.153 10 C -0.132 4.132 11 C 0.032 3.968 12 H 0.043 0.957 13 C -0.551 4.551 14 H 0.072 0.928 15 C -0.140 4.140 16 N -0.529 5.529 17 Si 0.717 3.283 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.153 4.153 22 C -0.186 4.186 23 C -0.068 4.068 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.155 0.845 33 H 0.078 0.922 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.050 0.950 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.126 -0.310 -8.619 19.175 hybrid contribution 0.444 -0.504 0.953 1.166 sum -16.682 -0.814 -7.666 18.377 Atomic orbital electron populations 1.22344 0.87581 1.01898 1.00514 1.61946 1.07282 1.14148 1.43511 1.22132 0.96143 0.88699 1.00297 1.21556 0.92565 1.00961 0.99074 1.21613 0.88213 0.94031 0.98484 1.60701 1.05618 1.52242 1.12081 1.22487 0.95011 0.96830 0.88539 0.94530 1.22278 0.98665 0.96262 0.98057 1.22026 0.92195 1.00232 0.98769 1.19369 0.94030 0.92412 0.90959 0.95702 1.21130 0.91108 1.43612 0.99214 0.92756 1.24978 0.98464 0.95364 0.95206 1.69969 1.34732 1.44264 1.03972 0.86716 0.85848 0.78340 0.77412 1.20289 1.21414 1.20377 1.22722 0.93292 0.97625 1.01677 1.22353 0.94652 0.99070 1.02490 1.22027 0.95662 0.97915 0.91243 0.91427 0.91526 0.95833 0.95019 0.90793 0.90844 0.91178 0.91053 0.84493 0.92235 0.94500 0.93039 0.92978 0.93130 0.93926 0.91633 0.90981 0.91532 0.94992 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.59 60.07 0.58 0.78 16 2 N -0.54 -5.70 4.91 -242.96 -1.19 -6.89 16 3 C 0.06 0.57 5.46 -3.83 -0.02 0.55 16 4 C -0.10 -1.20 5.70 -26.65 -0.15 -1.35 16 5 C 0.09 1.14 2.39 -67.59 -0.16 0.98 16 6 N -0.68 -10.32 6.04 -97.89 -0.59 -10.91 16 7 C 0.08 1.45 2.96 -66.07 -0.20 1.25 16 8 H 0.04 0.66 7.25 -51.93 -0.38 0.28 16 9 C -0.11 -2.25 6.35 -25.61 -0.16 -2.42 16 10 C -0.09 -2.25 5.40 -25.61 -0.14 -2.38 16 11 C 0.05 1.29 2.79 -90.12 -0.25 1.04 16 12 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 13 C -0.51 -14.27 8.41 -34.44 -0.29 -14.56 16 14 H 0.05 1.49 7.78 -52.49 -0.41 1.08 16 15 C 0.06 1.72 5.33 -17.82 -0.09 1.63 16 16 N -0.89 -25.98 12.35 55.43 0.68 -25.30 16 17 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 C -0.12 -2.39 5.70 -24.75 -0.14 -2.53 16 22 C -0.15 -1.72 5.34 -26.65 -0.14 -1.86 16 23 C 0.06 0.64 5.46 -3.84 -0.02 0.62 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 26 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.02 7.74 -51.93 -0.40 0.62 16 32 H 0.34 4.87 8.18 -39.29 -0.32 4.55 16 33 H 0.06 1.16 8.04 -51.93 -0.42 0.74 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 1.32 7.83 -51.93 -0.41 0.92 16 36 H 0.05 1.33 7.93 -51.93 -0.41 0.91 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 1.39 8.05 -51.93 -0.42 0.98 16 40 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 41 H 0.07 0.82 7.51 -51.93 -0.39 0.43 16 42 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 LS Contribution 329.36 15.07 4.96 4.96 Total: -1.00 -28.44 329.36 -10.53 -38.97 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -8.17 Total: 0.85 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -1.20 Total: -18.25 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: -1.10 Total: -43.10 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.44 -10.53 -38.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393279639.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.478 kcal (2) G-P(sol) polarization free energy of solvation -28.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds