Wall clock time and date at job start Mon Mar 30 2020 03:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46848 * 110.99584 * 2 1 4 4 C 1.53040 * 109.52033 * 185.83769 * 3 2 1 5 5 C 1.53114 * 109.27935 * 300.82035 * 4 3 2 6 6 N 1.46901 * 109.52289 * 177.55737 * 5 4 3 7 7 C 1.46905 * 110.99870 * 155.00100 * 6 5 4 8 8 H 1.09004 * 110.43546 * 36.08954 * 7 6 5 9 9 C 1.54260 * 110.48600 * 273.54838 * 7 6 5 10 10 C 1.53880 * 106.59786 * 217.71327 * 9 7 6 11 11 C 1.54260 * 106.59752 * 359.97438 * 10 9 7 12 12 H 1.09001 * 110.48764 * 264.93552 * 11 10 9 13 13 C 1.50703 * 110.48789 * 142.42468 * 11 10 9 14 14 H 1.07995 * 119.99773 * 241.45873 * 13 11 10 15 15 C 1.37870 * 119.99878 * 61.44848 * 13 11 10 16 16 N 1.31520 * 120.00546 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 119.99992 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47053 * 60.00213 * 17 15 13 19 19 H 1.48500 * 109.47096 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47159 * 300.00562 * 17 15 13 21 21 C 1.54888 * 104.19855 * 23.61078 * 11 10 9 22 22 C 1.53119 * 109.16160 * 57.65566 * 5 4 3 23 23 C 1.46837 * 110.99826 * 124.20884 * 2 1 3 24 24 H 1.09005 * 109.46858 * 59.99690 * 1 2 3 25 25 H 1.08993 * 109.46919 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47104 * 299.99995 * 1 2 3 27 27 H 1.09001 * 109.46382 * 65.82778 * 3 2 1 28 28 H 1.09001 * 109.45682 * 305.85031 * 3 2 1 29 29 H 1.09000 * 109.50123 * 180.87970 * 4 3 2 30 30 H 1.08998 * 109.53285 * 60.78454 * 4 3 2 31 31 H 1.08998 * 109.52622 * 297.68685 * 5 4 3 32 32 H 1.00901 * 111.00067 * 278.95276 * 6 5 4 33 33 H 1.08997 * 110.03841 * 336.99469 * 9 7 6 34 34 H 1.09002 * 110.03606 * 98.37803 * 9 7 6 35 35 H 1.08996 * 110.03136 * 119.28992 * 10 9 7 36 36 H 1.09006 * 110.02681 * 240.71368 * 10 9 7 37 37 H 0.96996 * 120.00291 * 180.02562 * 16 15 13 38 38 H 1.08999 * 110.75753 * 203.74210 * 21 11 10 39 39 H 1.08996 * 110.75444 * 80.36725 * 21 11 10 40 40 H 1.09007 * 109.50520 * 62.28172 * 22 5 4 41 41 H 1.08996 * 109.50845 * 182.40411 * 22 5 4 42 42 H 1.09006 * 109.46653 * 294.17650 * 23 2 1 43 43 H 1.08998 * 109.46572 * 54.15531 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 -0.1467 5 6 4.1188 0.5371 1.0144 6 7 5.5756 0.4487 0.8475 7 6 6.2424 0.2469 2.1408 8 1 5.6380 -0.3917 2.7850 9 6 6.5140 1.6022 2.8256 10 6 7.8835 1.4791 3.5163 11 6 8.3960 0.0530 3.2277 12 1 8.1412 -0.6173 4.0485 13 6 9.8857 0.0639 3.0002 14 1 10.2893 -0.2562 2.0510 15 6 10.7332 0.4826 4.0038 16 7 10.2418 0.8721 5.1599 17 14 12.5798 0.4967 3.7216 18 1 12.8998 1.3955 2.5836 19 1 13.2639 0.9847 4.9460 20 1 13.0436 -0.8794 3.4111 21 6 7.6505 -0.3643 1.9357 22 6 3.5182 -0.8714 1.0209 23 6 1.9952 -0.7707 1.1337 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.7325 1.8609 0.9376 28 1 1.5633 1.9256 -0.8331 29 1 3.9098 2.3513 -0.1310 30 1 3.7819 0.8573 -1.0906 31 1 3.8896 1.0361 1.9560 32 1 5.8213 -0.2816 0.1961 33 1 6.5415 2.3979 2.0811 34 1 5.7396 1.8092 3.5643 35 1 8.5755 2.2150 3.1070 36 1 7.7742 1.6259 4.5909 37 1 10.8380 1.1670 5.8658 38 1 7.5928 -1.4499 1.8566 39 1 8.1324 0.0632 1.0565 40 1 3.7814 -1.3835 0.0953 41 1 3.9099 -1.4302 1.8708 42 1 1.7324 -0.2708 2.0660 43 1 1.5636 -1.7715 1.1241 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393279639.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:11 Heat of formation + Delta-G solvation = -35.379115 kcal Electronic energy + Delta-G solvation = -19136.687739 eV Core-core repulsion = 16407.539282 eV Total energy + Delta-G solvation = -2729.148458 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.37349 -38.93786 -36.17302 -34.31699 -31.99897 -31.71468 -29.88397 -28.30676 -26.44421 -25.34727 -24.07906 -23.03450 -21.39951 -20.61215 -20.47346 -18.28336 -17.05131 -16.77468 -16.55426 -16.01946 -15.90008 -15.66735 -15.17898 -14.84208 -14.45903 -14.14482 -14.02828 -13.48313 -13.32445 -13.22916 -13.00539 -12.74288 -12.65835 -12.42571 -12.20860 -12.15779 -12.03455 -11.80213 -11.63035 -11.49573 -11.33420 -11.31516 -10.88093 -10.72814 -10.46162 -9.31364 -9.21007 -8.10576 -6.20436 1.41668 1.43372 1.50831 2.44432 3.00153 3.20037 3.22570 3.82489 3.92098 3.97953 4.11307 4.15350 4.26627 4.34658 4.39146 4.52400 4.60517 4.62397 4.68429 4.74635 4.78310 4.87092 4.90439 4.99340 5.02986 5.03285 5.09174 5.12996 5.17660 5.23587 5.31507 5.36853 5.46535 5.54964 5.68443 5.92479 6.00216 6.11785 6.13871 6.28523 6.41840 6.59315 6.90778 7.46862 8.98246 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.059462 B = 0.003798 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.776161 B = 7369.614277 C = 7394.720623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.554 5.554 3 C 0.059 3.941 4 C -0.097 4.097 5 C 0.088 3.912 6 N -0.677 5.677 7 C 0.097 3.903 8 H 0.041 0.959 9 C -0.104 4.104 10 C -0.084 4.084 11 C 0.040 3.960 12 H -0.004 1.004 13 C -0.532 4.532 14 H 0.054 0.946 15 C 0.010 3.990 16 N -0.921 5.921 17 Si 0.954 3.046 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.270 1.270 21 C -0.104 4.104 22 C -0.140 4.140 23 C 0.062 3.938 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.025 0.975 27 H 0.029 0.971 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.344 0.656 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.025 0.975 36 H 0.026 0.974 37 H 0.259 0.741 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.028 0.972 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.530 -1.103 -9.829 21.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.279 5.279 3 C -0.070 4.070 4 C -0.135 4.135 5 C -0.022 4.022 6 N -0.307 5.307 7 C -0.012 4.012 8 H 0.059 0.941 9 C -0.142 4.142 10 C -0.123 4.123 11 C 0.021 3.979 12 H 0.014 0.986 13 C -0.571 4.571 14 H 0.072 0.928 15 C -0.189 4.189 16 N -0.560 5.560 17 Si 0.779 3.221 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.195 1.195 21 C -0.142 4.142 22 C -0.180 4.180 23 C -0.066 4.066 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.043 0.957 27 H 0.047 0.953 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.163 0.837 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.044 0.956 36 H 0.045 0.955 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.047 0.953 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.221 -0.572 -10.083 20.833 hybrid contribution 0.755 -0.432 1.408 1.655 sum -17.466 -1.004 -8.675 19.528 Atomic orbital electron populations 1.22401 0.86168 1.02679 1.01098 1.61963 1.08633 1.14024 1.43293 1.22107 0.95090 0.88985 1.00794 1.21483 0.93555 1.00341 0.98156 1.21646 0.86781 0.95095 0.98672 1.60622 1.07045 1.52572 1.10473 1.22169 0.93838 0.95317 0.89926 0.94111 1.22146 0.96262 0.97568 0.98262 1.21816 0.94216 0.98833 0.97409 1.19378 0.93656 0.92566 0.92286 0.98620 1.21526 0.92782 1.43498 0.99258 0.92816 1.25788 1.03105 0.95029 0.94969 1.70102 1.36209 1.45007 1.04718 0.85683 0.80308 0.78672 0.77431 1.19608 1.21076 1.19520 1.22538 0.94279 0.98455 0.98922 1.22262 0.95587 0.97897 1.02225 1.21998 0.94729 0.98630 0.91283 0.90412 0.90713 0.95651 0.95250 0.89378 0.91223 0.91306 0.92165 0.83653 0.91761 0.93096 0.95573 0.95493 0.93183 0.92810 0.92064 0.90871 0.92188 0.95343 0.89904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.59 127.69 1.22 1.57 16 2 N -0.55 -10.23 4.91 -922.58 -4.53 -14.76 16 3 C 0.06 1.07 5.46 86.33 0.47 1.54 16 4 C -0.10 -2.06 5.70 30.65 0.17 -1.89 16 5 C 0.09 2.15 2.39 44.99 0.11 2.25 16 6 N -0.68 -19.49 6.04 -463.62 -2.80 -22.29 16 7 C 0.10 3.40 2.96 45.98 0.14 3.54 16 8 H 0.04 1.42 7.25 -2.38 -0.02 1.40 16 9 C -0.10 -4.05 6.35 31.32 0.20 -3.85 16 10 C -0.08 -4.14 5.40 31.32 0.17 -3.97 16 11 C 0.04 2.06 2.79 -10.47 -0.03 2.03 16 12 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 13 C -0.53 -30.13 8.41 25.60 0.22 -29.92 16 14 H 0.05 2.97 7.78 -2.91 -0.02 2.94 16 15 C 0.01 0.55 5.33 84.65 0.45 1.00 16 16 N -0.92 -55.00 12.35 21.45 0.26 -54.74 16 17 Si 0.95 44.57 29.54 68.60 2.03 46.59 16 18 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 21 C -0.10 -4.27 5.70 31.88 0.18 -4.09 16 22 C -0.14 -3.04 5.34 30.65 0.16 -2.87 16 23 C 0.06 1.19 5.46 86.33 0.47 1.66 16 24 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 25 H 0.07 0.92 8.09 -2.39 -0.02 0.90 16 26 H 0.02 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.09 1.38 8.12 -2.39 -0.02 1.36 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 1.62 7.74 -2.39 -0.02 1.61 16 32 H 0.34 9.26 8.18 -89.69 -0.73 8.53 16 33 H 0.06 2.44 8.04 -2.39 -0.02 2.43 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.03 1.37 7.83 -2.39 -0.02 1.35 16 36 H 0.03 1.41 7.93 -2.38 -0.02 1.39 16 37 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 38 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.06 2.56 8.05 -2.39 -0.02 2.54 16 40 H 0.07 1.58 8.10 -2.38 -0.02 1.56 16 41 H 0.06 1.38 7.51 -2.39 -0.02 1.36 16 42 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 43 H 0.08 1.40 8.09 -2.39 -0.02 1.38 16 Total: -1.00 -61.12 329.36 -0.89 -62.01 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.21 Total: 16.18 kcal Atomic # 6 Polarization: -36.93 SS G_CDS: 3.94 Total: -33.00 kcal Atomic # 7 Polarization: -84.72 SS G_CDS: -7.07 Total: -91.78 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -61.12 -0.89 -62.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393279639.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.632 kcal (2) G-P(sol) polarization free energy of solvation -61.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds