Wall clock time and date at job start Mon Mar 30 2020 03:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46841 * 111.00470 * 2 1 4 4 C 1.53038 * 109.52749 * 185.84160 * 3 2 1 5 5 C 1.53117 * 109.27619 * 300.82473 * 4 3 2 6 6 N 1.46905 * 109.52089 * 177.55723 * 5 4 3 7 7 C 1.46901 * 110.99870 * 154.99919 * 6 5 4 8 8 H 1.09004 * 110.01559 * 33.60640 * 7 6 5 9 9 C 1.54273 * 110.03125 * 272.16709 * 7 6 5 10 10 C 1.54892 * 104.19338 * 217.10670 * 9 7 6 11 11 C 1.54892 * 102.74865 * 37.94236 * 10 9 7 12 12 H 1.09003 * 110.60096 * 80.79044 * 11 10 9 13 13 C 1.50699 * 110.48175 * 203.37991 * 11 10 9 14 14 H 1.07999 * 119.99806 * 114.77759 * 13 11 10 15 15 C 1.37878 * 120.00047 * 294.77109 * 13 11 10 16 16 N 1.31514 * 119.99929 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 119.99893 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47087 * 90.00256 * 17 15 13 19 19 H 1.48505 * 109.47037 * 209.99784 * 17 15 13 20 20 H 1.48501 * 109.47425 * 329.99951 * 17 15 13 21 21 C 1.53876 * 110.03217 * 155.00265 * 7 6 5 22 22 C 1.53114 * 109.16369 * 57.65144 * 5 4 3 23 23 C 1.46847 * 110.99978 * 124.21768 * 2 1 3 24 24 H 1.08996 * 109.47219 * 59.99001 * 1 2 3 25 25 H 1.08993 * 109.47339 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46771 * 299.99967 * 1 2 3 27 27 H 1.09000 * 109.45910 * 65.82418 * 3 2 1 28 28 H 1.09006 * 109.45426 * 305.85759 * 3 2 1 29 29 H 1.08996 * 109.50554 * 180.87675 * 4 3 2 30 30 H 1.09000 * 109.53260 * 60.78242 * 4 3 2 31 31 H 1.09006 * 109.52121 * 297.67993 * 5 4 3 32 32 H 1.00901 * 110.99869 * 31.04630 * 6 5 4 33 33 H 1.09004 * 110.48246 * 335.78233 * 9 7 6 34 34 H 1.08991 * 110.48607 * 98.42758 * 9 7 6 35 35 H 1.08992 * 110.75718 * 279.62597 * 10 9 7 36 36 H 1.08998 * 110.91087 * 156.33011 * 10 9 7 37 37 H 0.96997 * 119.99770 * 179.97438 * 16 15 13 38 38 H 1.09004 * 110.02839 * 238.56782 * 21 7 6 39 39 H 1.08999 * 110.03282 * 359.97438 * 21 7 6 40 40 H 1.09000 * 109.50562 * 62.28833 * 22 5 4 41 41 H 1.08998 * 109.50341 * 182.40539 * 22 5 4 42 42 H 1.09004 * 109.45898 * 294.16543 * 23 2 1 43 43 H 1.08994 * 109.46885 * 54.14994 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3708 0.0000 4 6 3.5182 1.3341 -0.1468 5 6 4.1189 0.5367 1.0142 6 7 5.5757 0.4483 0.8472 7 6 6.2425 0.2463 2.1405 8 1 5.6127 -0.3565 2.7949 9 6 6.5402 1.6088 2.8001 10 6 7.9143 1.4066 3.4858 11 6 8.6758 0.5189 2.4703 12 1 9.0843 1.1252 1.6618 13 6 9.7746 -0.2477 3.1602 14 1 9.7271 -1.3251 3.2181 15 6 10.8406 0.4263 3.7173 16 7 10.8982 1.7383 3.6470 17 14 12.2030 -0.5240 4.5717 18 1 13.2579 -0.8712 3.5858 19 1 12.7890 0.3124 5.6498 20 1 11.6452 -1.7688 5.1588 21 6 7.6004 -0.4466 1.9309 22 6 3.5181 -0.8716 1.0207 23 6 1.9953 -0.7709 1.1336 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.7326 1.8607 0.9376 28 1 1.5634 1.9256 -0.8330 29 1 3.9100 2.3511 -0.1311 30 1 3.7820 0.8571 -1.0907 31 1 3.8898 1.0358 1.9559 32 1 5.9362 1.2658 0.3783 33 1 6.6022 2.3926 2.0451 34 1 5.7766 1.8496 3.5395 35 1 7.7982 0.8908 4.4389 36 1 8.4241 2.3601 3.6239 37 1 11.6480 2.2125 4.0393 38 1 7.6299 -1.3852 2.4842 39 1 7.7644 -0.6333 0.8696 40 1 3.7813 -1.3838 0.0952 41 1 3.9099 -1.4304 1.8706 42 1 1.7326 -0.2710 2.0660 43 1 1.5636 -1.7717 1.1240 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393279640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:15 Heat of formation + Delta-G solvation = -16.035319 kcal Electronic energy + Delta-G solvation = -19149.139320 eV Core-core repulsion = 16420.829672 eV Total energy + Delta-G solvation = -2728.309648 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.33897 -37.54930 -34.76033 -32.44933 -30.94798 -30.57163 -28.00746 -26.88688 -25.28161 -23.61125 -23.16970 -22.00321 -19.72810 -19.55523 -18.68989 -16.55091 -16.00003 -15.26347 -15.14146 -14.93475 -14.72189 -14.42692 -13.84397 -13.36961 -13.02514 -12.68837 -12.55991 -12.42767 -12.29330 -11.82142 -11.62023 -11.43526 -11.20872 -11.02037 -10.92149 -10.68387 -10.62660 -10.40834 -10.33307 -9.92291 -9.73283 -9.46821 -9.06549 -8.72544 -8.50484 -8.30110 -7.90337 -5.95039 -3.96977 3.33996 3.40538 3.43997 3.76817 4.41445 4.49386 4.71913 4.82927 5.01475 5.10658 5.22142 5.29075 5.37042 5.38806 5.49801 5.56117 5.60505 5.62202 5.66201 5.71350 5.78964 5.94482 5.97235 6.04950 6.18254 6.31800 6.44003 6.60316 6.67590 6.78920 6.90118 6.91818 6.94105 7.15727 7.23255 7.39611 7.64647 7.76535 7.82994 7.95980 8.10334 8.54066 9.06412 9.66609 11.14509 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.058205 B = 0.003860 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.941691 B = 7251.233572 C = 7461.536955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.059 3.941 4 C -0.119 4.119 5 C 0.087 3.913 6 N -0.679 5.679 7 C 0.086 3.914 8 H 0.064 0.936 9 C -0.154 4.154 10 C -0.098 4.098 11 C 0.047 3.953 12 H 0.029 0.971 13 C -0.510 4.510 14 H 0.054 0.946 15 C 0.060 3.940 16 N -0.892 5.892 17 Si 0.888 3.112 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.275 1.275 21 C -0.105 4.105 22 C -0.104 4.104 23 C 0.056 3.944 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.022 0.978 27 H 0.030 0.970 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.036 0.964 32 H 0.339 0.661 33 H 0.052 0.948 34 H 0.041 0.959 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.258 0.742 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.029 0.971 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.538 -0.690 -5.649 19.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.069 4.069 4 C -0.157 4.157 5 C -0.024 4.024 6 N -0.310 5.310 7 C -0.024 4.024 8 H 0.082 0.918 9 C -0.194 4.194 10 C -0.136 4.136 11 C 0.028 3.972 12 H 0.047 0.953 13 C -0.549 4.549 14 H 0.073 0.927 15 C -0.141 4.141 16 N -0.531 5.531 17 Si 0.716 3.284 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.200 1.200 21 C -0.144 4.144 22 C -0.142 4.142 23 C -0.072 4.072 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.041 0.959 27 H 0.049 0.951 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.158 0.842 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.048 0.952 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.274 -1.445 -6.183 19.346 hybrid contribution 0.382 0.920 1.766 2.028 sum -17.892 -0.525 -4.417 18.437 Atomic orbital electron populations 1.22344 0.87586 1.01960 1.00432 1.61929 1.07240 1.13847 1.43751 1.22051 0.95627 0.89001 1.00221 1.21773 0.93928 0.99915 1.00072 1.21504 0.88986 0.95403 0.96462 1.60773 1.02313 1.45493 1.22398 1.22346 0.96161 0.95771 0.88106 0.91790 1.23152 0.99851 0.96847 0.99520 1.22381 0.91551 1.01218 0.98484 1.19456 0.91502 0.92405 0.93813 0.95296 1.21237 1.05180 0.93015 1.35423 0.92729 1.24991 0.97952 0.94837 0.96285 1.69962 1.31042 1.06450 1.45603 0.86664 0.82450 0.79943 0.79342 1.20759 1.21384 1.19963 1.22286 0.92905 0.98980 1.00193 1.21585 0.92360 0.97137 1.03138 1.22136 0.96271 0.97889 0.90947 0.91466 0.91429 0.95917 0.95130 0.90784 0.91676 0.90160 0.94570 0.84172 0.92919 0.94062 0.93513 0.91733 0.93220 0.92904 0.92682 0.90379 0.91580 0.95240 0.90768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.59 60.06 0.58 0.79 16 2 N -0.54 -5.77 4.91 -242.96 -1.19 -6.96 16 3 C 0.06 0.61 5.46 -3.84 -0.02 0.59 16 4 C -0.12 -1.35 5.36 -26.65 -0.14 -1.49 16 5 C 0.09 1.14 2.40 -67.59 -0.16 0.98 16 6 N -0.68 -10.52 5.98 -98.43 -0.59 -11.11 16 7 C 0.09 1.54 3.01 -66.59 -0.20 1.34 16 8 H 0.06 1.13 7.21 -51.93 -0.37 0.76 16 9 C -0.15 -2.91 6.37 -25.07 -0.16 -3.07 16 10 C -0.10 -2.29 5.75 -24.74 -0.14 -2.43 16 11 C 0.05 1.17 2.72 -90.11 -0.25 0.93 16 12 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 13 C -0.51 -14.20 8.46 -34.44 -0.29 -14.49 16 14 H 0.05 1.51 7.54 -52.49 -0.40 1.11 16 15 C 0.06 1.70 5.35 -17.82 -0.10 1.61 16 16 N -0.89 -25.94 12.29 55.43 0.68 -25.25 16 17 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 C -0.11 -2.23 6.15 -25.62 -0.16 -2.39 16 22 C -0.10 -1.31 5.58 -26.65 -0.15 -1.45 16 23 C 0.06 0.61 5.46 -3.83 -0.02 0.58 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 26 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.04 0.51 7.78 -51.93 -0.40 0.11 16 32 H 0.34 5.18 7.73 -39.29 -0.30 4.87 16 33 H 0.05 0.96 7.56 -51.93 -0.39 0.57 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 1.13 8.05 -51.93 -0.42 0.71 16 36 H 0.06 1.65 7.55 -51.93 -0.39 1.25 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.05 1.14 7.66 -51.93 -0.40 0.74 16 39 H 0.05 1.15 7.92 -51.93 -0.41 0.74 16 40 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.07 0.87 7.53 -51.93 -0.39 0.48 16 42 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 LS Contribution 328.11 15.07 4.94 4.94 Total: -1.00 -28.42 328.11 -10.47 -38.89 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -8.08 Total: 1.46 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -1.21 Total: -18.52 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: -1.10 Total: -43.32 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.42 -10.47 -38.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393279640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.852 kcal (2) G-P(sol) polarization free energy of solvation -28.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds