Wall clock time and date at job start Mon Mar 30 2020 03:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46841 * 111.00470 * 2 1 4 4 C 1.53038 * 109.52749 * 185.84160 * 3 2 1 5 5 C 1.53117 * 109.27619 * 300.82473 * 4 3 2 6 6 N 1.46905 * 109.52089 * 177.55723 * 5 4 3 7 7 C 1.46901 * 110.99870 * 154.99919 * 6 5 4 8 8 H 1.09004 * 110.01559 * 33.60640 * 7 6 5 9 9 C 1.54273 * 110.03125 * 272.16709 * 7 6 5 10 10 C 1.54892 * 104.19338 * 217.10670 * 9 7 6 11 11 C 1.54892 * 102.74865 * 37.94236 * 10 9 7 12 12 H 1.09003 * 110.60096 * 80.79044 * 11 10 9 13 13 C 1.50699 * 110.48175 * 203.37991 * 11 10 9 14 14 H 1.07999 * 119.99806 * 114.77759 * 13 11 10 15 15 C 1.37878 * 120.00047 * 294.77109 * 13 11 10 16 16 N 1.31514 * 119.99929 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 119.99893 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47087 * 90.00256 * 17 15 13 19 19 H 1.48505 * 109.47037 * 209.99784 * 17 15 13 20 20 H 1.48501 * 109.47425 * 329.99951 * 17 15 13 21 21 C 1.53876 * 110.03217 * 155.00265 * 7 6 5 22 22 C 1.53114 * 109.16369 * 57.65144 * 5 4 3 23 23 C 1.46847 * 110.99978 * 124.21768 * 2 1 3 24 24 H 1.08996 * 109.47219 * 59.99001 * 1 2 3 25 25 H 1.08993 * 109.47339 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46771 * 299.99967 * 1 2 3 27 27 H 1.09000 * 109.45910 * 65.82418 * 3 2 1 28 28 H 1.09006 * 109.45426 * 305.85759 * 3 2 1 29 29 H 1.08996 * 109.50554 * 180.87675 * 4 3 2 30 30 H 1.09000 * 109.53260 * 60.78242 * 4 3 2 31 31 H 1.09006 * 109.52121 * 297.67993 * 5 4 3 32 32 H 1.00901 * 110.99869 * 31.04630 * 6 5 4 33 33 H 1.09004 * 110.48246 * 335.78233 * 9 7 6 34 34 H 1.08991 * 110.48607 * 98.42758 * 9 7 6 35 35 H 1.08992 * 110.75718 * 279.62597 * 10 9 7 36 36 H 1.08998 * 110.91087 * 156.33011 * 10 9 7 37 37 H 0.96997 * 119.99770 * 179.97438 * 16 15 13 38 38 H 1.09004 * 110.02839 * 238.56782 * 21 7 6 39 39 H 1.08999 * 110.03282 * 359.97438 * 21 7 6 40 40 H 1.09000 * 109.50562 * 62.28833 * 22 5 4 41 41 H 1.08998 * 109.50341 * 182.40539 * 22 5 4 42 42 H 1.09004 * 109.45898 * 294.16543 * 23 2 1 43 43 H 1.08994 * 109.46885 * 54.14994 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3708 0.0000 4 6 3.5182 1.3341 -0.1468 5 6 4.1189 0.5367 1.0142 6 7 5.5757 0.4483 0.8472 7 6 6.2425 0.2463 2.1405 8 1 5.6127 -0.3565 2.7949 9 6 6.5402 1.6088 2.8001 10 6 7.9143 1.4066 3.4858 11 6 8.6758 0.5189 2.4703 12 1 9.0843 1.1252 1.6618 13 6 9.7746 -0.2477 3.1602 14 1 9.7271 -1.3251 3.2181 15 6 10.8406 0.4263 3.7173 16 7 10.8982 1.7383 3.6470 17 14 12.2030 -0.5240 4.5717 18 1 13.2579 -0.8712 3.5858 19 1 12.7890 0.3124 5.6498 20 1 11.6452 -1.7688 5.1588 21 6 7.6004 -0.4466 1.9309 22 6 3.5181 -0.8716 1.0207 23 6 1.9953 -0.7709 1.1336 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.7326 1.8607 0.9376 28 1 1.5634 1.9256 -0.8330 29 1 3.9100 2.3511 -0.1311 30 1 3.7820 0.8571 -1.0907 31 1 3.8898 1.0358 1.9559 32 1 5.9362 1.2658 0.3783 33 1 6.6022 2.3926 2.0451 34 1 5.7766 1.8496 3.5395 35 1 7.7982 0.8908 4.4389 36 1 8.4241 2.3601 3.6239 37 1 11.6480 2.2125 4.0393 38 1 7.6299 -1.3852 2.4842 39 1 7.7644 -0.6333 0.8696 40 1 3.7813 -1.3838 0.0952 41 1 3.9099 -1.4304 1.8706 42 1 1.7326 -0.2710 2.0660 43 1 1.5636 -1.7717 1.1240 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393279640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:14 Heat of formation + Delta-G solvation = -33.886502 kcal Electronic energy + Delta-G solvation = -19149.913405 eV Core-core repulsion = 16420.829672 eV Total energy + Delta-G solvation = -2729.083733 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.37476 -38.99056 -36.09600 -34.31070 -31.91476 -31.81332 -29.81645 -28.31416 -26.48480 -25.34993 -24.12814 -22.96036 -21.30455 -20.78098 -20.31092 -18.54380 -17.08001 -16.63457 -16.36583 -16.21853 -15.94978 -15.52853 -15.30706 -14.59007 -14.33286 -14.10844 -13.93684 -13.51281 -13.38232 -13.30523 -12.95596 -12.84142 -12.67137 -12.42972 -12.37659 -12.10344 -12.08947 -11.86723 -11.51310 -11.41405 -11.36505 -11.19244 -10.91621 -10.79550 -10.43875 -9.27686 -9.20555 -8.10476 -6.19852 1.40991 1.41359 1.51846 2.44291 3.00975 3.18567 3.24398 3.81053 3.92870 3.98665 4.11470 4.22838 4.26409 4.32189 4.40524 4.50973 4.61547 4.65960 4.68250 4.74593 4.78471 4.89525 4.90811 4.97073 5.01159 5.04048 5.06790 5.13912 5.18000 5.28419 5.29900 5.42848 5.44619 5.52365 5.66764 5.95071 6.01767 6.13106 6.16317 6.27968 6.43671 6.57442 6.91719 7.47250 8.98125 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.058205 B = 0.003860 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.941691 B = 7251.233572 C = 7461.536955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.556 5.556 3 C 0.061 3.939 4 C -0.113 4.113 5 C 0.087 3.913 6 N -0.680 5.680 7 C 0.101 3.899 8 H 0.073 0.927 9 C -0.140 4.140 10 C -0.092 4.092 11 C 0.039 3.961 12 H -0.003 1.003 13 C -0.532 4.532 14 H 0.051 0.949 15 C 0.010 3.990 16 N -0.921 5.921 17 Si 0.952 3.048 18 H -0.276 1.276 19 H -0.284 1.284 20 H -0.268 1.268 21 C -0.097 4.097 22 C -0.101 4.101 23 C 0.060 3.940 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.026 0.974 27 H 0.031 0.969 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.033 0.967 32 H 0.342 0.658 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.033 0.967 36 H 0.035 0.965 37 H 0.259 0.741 38 H 0.046 0.954 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.030 0.970 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.189 -1.080 -5.790 21.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.281 5.281 3 C -0.067 4.067 4 C -0.151 4.151 5 C -0.022 4.022 6 N -0.311 5.311 7 C -0.009 4.009 8 H 0.091 0.909 9 C -0.179 4.179 10 C -0.131 4.131 11 C 0.021 3.979 12 H 0.015 0.985 13 C -0.570 4.570 14 H 0.069 0.931 15 C -0.188 4.188 16 N -0.560 5.560 17 Si 0.778 3.222 18 H -0.202 1.202 19 H -0.209 1.209 20 H -0.192 1.192 21 C -0.135 4.135 22 C -0.139 4.139 23 C -0.068 4.068 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.107 0.893 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.161 0.839 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.048 0.952 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.946 -1.842 -6.336 21.009 hybrid contribution 0.897 1.042 1.768 2.240 sum -19.049 -0.800 -4.568 19.605 Atomic orbital electron populations 1.22396 0.86095 1.02710 1.01081 1.61939 1.08670 1.13950 1.43564 1.22049 0.94639 0.89131 1.00872 1.21722 0.94871 0.99858 0.98697 1.21570 0.87303 0.96184 0.97174 1.60702 1.03783 1.45838 1.20757 1.22059 0.94698 0.94809 0.89368 0.90917 1.23035 0.97376 0.97740 0.99781 1.22168 0.93947 0.99090 0.97855 1.19433 0.92282 0.93018 0.93211 0.98515 1.21619 1.06422 0.93161 1.35764 0.93059 1.25777 1.00317 0.95740 0.97008 1.70089 1.31744 1.07812 1.46372 0.85644 0.79485 0.78773 0.78299 1.20186 1.20946 1.19205 1.22128 0.93700 0.97987 0.99673 1.21535 0.93806 0.96416 1.02161 1.22071 0.94879 0.98663 0.91180 0.90470 0.90709 0.95570 0.95077 0.89325 0.90887 0.90882 0.94881 0.83921 0.92150 0.91984 0.94794 0.94579 0.93201 0.93534 0.92761 0.91529 0.92336 0.95187 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.59 127.69 1.22 1.57 16 2 N -0.56 -10.46 4.91 -922.60 -4.53 -14.99 16 3 C 0.06 1.10 5.46 86.33 0.47 1.57 16 4 C -0.11 -2.33 5.36 30.65 0.16 -2.17 16 5 C 0.09 2.14 2.40 44.99 0.11 2.25 16 6 N -0.68 -20.11 5.98 -465.33 -2.78 -22.90 16 7 C 0.10 3.50 3.01 45.64 0.14 3.64 16 8 H 0.07 2.44 7.21 -2.38 -0.02 2.43 16 9 C -0.14 -5.13 6.37 31.67 0.20 -4.93 16 10 C -0.09 -4.38 5.75 31.89 0.18 -4.19 16 11 C 0.04 2.02 2.72 -10.47 -0.03 1.99 16 12 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 13 C -0.53 -30.16 8.46 25.60 0.22 -29.94 16 14 H 0.05 2.87 7.54 -2.91 -0.02 2.84 16 15 C 0.01 0.57 5.35 84.66 0.45 1.02 16 16 N -0.92 -54.70 12.29 21.45 0.26 -54.44 16 17 Si 0.95 44.59 29.54 68.60 2.03 46.61 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 19 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 21 C -0.10 -4.10 6.15 31.32 0.19 -3.91 16 22 C -0.10 -2.37 5.58 30.65 0.17 -2.20 16 23 C 0.06 1.18 5.46 86.33 0.47 1.65 16 24 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 26 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.09 1.34 8.12 -2.38 -0.02 1.32 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.03 0.86 7.78 -2.38 -0.02 0.84 16 32 H 0.34 9.94 7.73 -89.69 -0.69 9.24 16 33 H 0.06 2.12 7.56 -2.39 -0.02 2.10 16 34 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.03 1.66 8.05 -2.39 -0.02 1.64 16 36 H 0.04 1.89 7.55 -2.39 -0.02 1.87 16 37 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 38 H 0.05 2.01 7.66 -2.38 -0.02 1.99 16 39 H 0.05 2.28 7.92 -2.39 -0.02 2.26 16 40 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.06 1.45 7.53 -2.39 -0.02 1.43 16 42 H 0.03 0.59 8.14 -2.38 -0.02 0.57 16 43 H 0.08 1.47 8.08 -2.39 -0.02 1.45 16 Total: -1.00 -61.17 328.11 -0.80 -61.97 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.26 Total: 17.39 kcal Atomic # 6 Polarization: -37.61 SS G_CDS: 3.97 Total: -33.65 kcal Atomic # 7 Polarization: -85.27 SS G_CDS: -7.05 Total: -92.32 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -61.17 -0.80 -61.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393279640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.085 kcal (2) G-P(sol) polarization free energy of solvation -61.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds