Wall clock time and date at job start Mon Mar 30 2020 03:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46841 * 111.00281 * 2 1 4 4 C 1.53042 * 109.52629 * 174.16212 * 3 2 1 5 5 C 1.53117 * 109.27613 * 59.17734 * 4 3 2 6 6 N 1.46901 * 109.52200 * 182.38087 * 5 4 3 7 7 C 1.46899 * 110.99972 * 204.87813 * 6 5 4 8 8 H 1.08996 * 110.43290 * 327.53328 * 7 6 5 9 9 C 1.54885 * 110.48958 * 90.22364 * 7 6 5 10 10 C 1.54891 * 102.74781 * 156.62044 * 9 7 6 11 11 C 1.54259 * 104.19778 * 322.05491 * 10 9 7 12 12 H 1.08998 * 110.03370 * 264.32721 * 11 10 9 13 13 C 1.50696 * 110.03589 * 142.89279 * 11 10 9 14 14 H 1.07996 * 120.00467 * 242.83604 * 13 11 10 15 15 C 1.37887 * 119.99423 * 62.83461 * 13 11 10 16 16 N 1.31506 * 120.00224 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 119.99425 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47233 * 60.00584 * 17 15 13 19 19 H 1.48503 * 109.46497 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47399 * 299.99813 * 17 15 13 21 21 C 1.53879 * 106.59795 * 23.60853 * 11 10 9 22 22 C 1.53120 * 109.16267 * 302.34396 * 5 4 3 23 23 C 1.46850 * 110.99956 * 235.78688 * 2 1 3 24 24 H 1.08992 * 109.47342 * 60.00208 * 1 2 3 25 25 H 1.09008 * 109.47163 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46915 * 299.99697 * 1 2 3 27 27 H 1.08998 * 109.46320 * 54.14149 * 3 2 1 28 28 H 1.08998 * 109.45897 * 294.17759 * 3 2 1 29 29 H 1.09003 * 109.49792 * 299.23877 * 4 3 2 30 30 H 1.08997 * 109.53473 * 179.13824 * 4 3 2 31 31 H 1.09002 * 109.52261 * 62.25263 * 5 4 3 32 32 H 1.00896 * 111.00110 * 80.91649 * 6 5 4 33 33 H 1.09006 * 110.75369 * 274.93422 * 9 7 6 34 34 H 1.09000 * 110.75858 * 38.30298 * 9 7 6 35 35 H 1.09002 * 110.48280 * 203.37547 * 10 9 7 36 36 H 1.08999 * 110.59921 * 80.79081 * 10 9 7 37 37 H 0.97002 * 119.99855 * 180.02562 * 16 15 13 38 38 H 1.08991 * 110.03563 * 240.71393 * 21 11 10 39 39 H 1.09004 * 110.07077 * 119.30894 * 21 11 10 40 40 H 1.09002 * 109.50326 * 177.59202 * 22 5 4 41 41 H 1.08999 * 109.50267 * 297.71858 * 22 5 4 42 42 H 1.09002 * 109.46123 * 305.85896 * 23 2 1 43 43 H 1.08999 * 109.45959 * 65.82235 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 0.1467 5 6 4.1188 0.5369 -1.0144 6 7 5.5758 0.4497 -0.8483 7 6 6.2417 0.2449 -2.1415 8 1 5.6088 -0.3425 -2.8067 9 6 6.5982 1.6058 -2.7894 10 6 7.7611 1.2361 -3.7433 11 6 8.5716 0.1820 -2.9612 12 1 9.4023 0.6597 -2.4418 13 6 9.0897 -0.8741 -3.9031 14 1 8.7677 -1.8992 -3.7948 15 6 9.9750 -0.5314 -4.9031 16 7 10.3675 0.7168 -5.0346 17 14 10.6179 -1.8407 -6.0702 18 1 9.4794 -2.4595 -6.7955 19 1 11.5476 -1.2193 -7.0473 20 1 11.3374 -2.8839 -5.2960 21 6 7.6055 -0.4482 -1.9426 22 6 3.5181 -0.8716 -1.0208 23 6 1.9952 -0.7709 -1.1337 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.5634 1.9257 0.8329 28 1 1.7325 1.8607 -0.9376 29 1 3.7814 0.8566 1.0906 30 1 3.9105 2.3509 0.1314 31 1 3.8887 1.0353 -1.9561 32 1 5.8223 -0.2787 -0.1951 33 1 5.7504 2.0012 -3.3489 34 1 6.9299 2.3182 -2.0339 35 1 8.3757 2.1116 -3.9528 36 1 7.3763 0.8107 -4.6702 37 1 10.9901 0.9578 -5.7384 38 1 7.9674 -0.2764 -0.9290 39 1 7.5114 -1.5181 -2.1288 40 1 3.9098 -1.4304 -1.8708 41 1 3.7814 -1.3837 -0.0953 42 1 1.5633 -1.7716 -1.1242 43 1 1.7324 -0.2710 -2.0660 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393279641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:18 Heat of formation + Delta-G solvation = -17.075573 kcal Electronic energy + Delta-G solvation = -19182.899324 eV Core-core repulsion = 16454.544568 eV Total energy + Delta-G solvation = -2728.354756 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.34795 -37.46430 -34.85778 -32.42403 -30.96056 -30.56368 -28.05181 -26.87820 -25.16645 -23.56256 -23.17729 -22.04025 -19.99587 -19.28893 -18.76925 -16.46507 -16.10904 -15.22482 -15.19134 -14.86475 -14.48918 -14.22587 -14.05657 -13.59041 -13.14089 -12.68459 -12.51517 -12.42954 -12.29514 -11.90490 -11.77547 -11.26716 -11.19878 -10.97198 -10.76522 -10.65114 -10.62612 -10.39846 -10.14176 -9.95821 -9.81543 -9.49224 -9.15178 -8.65990 -8.51553 -8.30983 -7.95337 -5.95351 -3.97848 3.34027 3.38848 3.41150 3.77043 4.42672 4.48004 4.77699 4.79618 4.98803 5.10504 5.23433 5.26510 5.35531 5.38258 5.50396 5.59462 5.61836 5.64252 5.69075 5.72661 5.77250 5.95430 6.00808 6.07477 6.24170 6.29676 6.48472 6.60581 6.72019 6.77329 6.88633 6.92077 6.92989 7.09997 7.29012 7.43050 7.63102 7.73960 7.86458 7.95225 8.10240 8.52808 9.05250 9.65362 11.14093 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.043136 B = 0.004094 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.959271 B = 6837.201349 C = 7137.755315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.056 3.944 4 C -0.103 4.103 5 C 0.087 3.913 6 N -0.679 5.679 7 C 0.083 3.917 8 H 0.041 0.959 9 C -0.114 4.114 10 C -0.092 4.092 11 C 0.048 3.952 12 H 0.027 0.973 13 C -0.514 4.514 14 H 0.053 0.947 15 C 0.061 3.939 16 N -0.889 5.889 17 Si 0.887 3.113 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.116 4.116 22 C -0.146 4.146 23 C 0.060 3.940 24 H 0.023 0.977 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.031 0.969 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.336 0.664 33 H 0.038 0.962 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.259 0.741 38 H 0.048 0.952 39 H 0.051 0.949 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.082 0.162 8.778 19.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.073 4.073 4 C -0.141 4.141 5 C -0.023 4.023 6 N -0.308 5.308 7 C -0.026 4.026 8 H 0.059 0.941 9 C -0.153 4.153 10 C -0.131 4.131 11 C 0.029 3.971 12 H 0.045 0.955 13 C -0.552 4.552 14 H 0.071 0.929 15 C -0.140 4.140 16 N -0.528 5.528 17 Si 0.715 3.285 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.154 4.154 22 C -0.186 4.186 23 C -0.069 4.069 24 H 0.042 0.958 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.050 0.950 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.155 0.845 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -16.685 0.737 9.083 19.012 hybrid contribution -0.178 -1.284 -1.732 2.163 sum -16.863 -0.547 7.351 18.404 Atomic orbital electron populations 1.22343 0.87588 1.01904 1.00501 1.61943 1.07278 1.14137 1.43549 1.22128 0.96140 0.88716 1.00286 1.21554 0.92577 1.00935 0.99068 1.21616 0.88203 0.94043 0.98457 1.60744 1.05683 1.52335 1.12028 1.22460 0.94860 0.96845 0.88405 0.94111 1.22606 0.98371 0.95855 0.98420 1.22255 0.94333 0.99582 0.96939 1.19160 0.92470 0.93471 0.91976 0.95452 1.21277 1.25976 0.94193 1.13770 0.92916 1.24989 0.96301 0.95170 0.97582 1.69963 1.33331 1.16574 1.32902 0.86739 0.78771 0.82051 0.80894 1.20407 1.21364 1.20351 1.22458 0.94262 0.98952 0.99688 1.22354 0.94622 0.99062 1.02539 1.22031 0.95682 0.97915 0.91225 0.95834 0.91524 0.91436 0.90808 0.95025 0.91206 0.90852 0.91062 0.84550 0.94299 0.91959 0.92606 0.93257 0.93107 0.93342 0.93067 0.91449 0.91005 0.91003 0.94975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.59 60.06 0.58 0.79 16 2 N -0.54 -5.77 4.91 -242.96 -1.19 -6.96 16 3 C 0.06 0.58 5.46 -3.83 -0.02 0.56 16 4 C -0.10 -1.20 5.70 -26.65 -0.15 -1.35 16 5 C 0.09 1.15 2.40 -67.59 -0.16 0.99 16 6 N -0.68 -10.35 6.08 -97.88 -0.60 -10.94 16 7 C 0.08 1.52 2.95 -66.05 -0.20 1.32 16 8 H 0.04 0.76 7.24 -51.93 -0.38 0.39 16 9 C -0.11 -2.24 6.57 -24.74 -0.16 -2.41 16 10 C -0.09 -2.20 5.44 -25.07 -0.14 -2.34 16 11 C 0.05 1.21 2.82 -90.66 -0.26 0.96 16 12 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 13 C -0.51 -14.24 8.36 -34.44 -0.29 -14.53 16 14 H 0.05 1.44 7.33 -52.49 -0.38 1.05 16 15 C 0.06 1.72 5.33 -17.82 -0.09 1.62 16 16 N -0.89 -25.91 12.43 55.43 0.69 -25.22 16 17 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C -0.12 -2.40 5.92 -25.61 -0.15 -2.55 16 22 C -0.15 -1.76 5.34 -26.65 -0.14 -1.91 16 23 C 0.06 0.65 5.46 -3.83 -0.02 0.63 16 24 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 25 H 0.07 0.51 8.09 -51.92 -0.42 0.09 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 28 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.03 7.86 -51.93 -0.41 0.62 16 32 H 0.34 4.88 8.05 -39.29 -0.32 4.56 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 1.42 7.97 -51.93 -0.41 1.00 16 36 H 0.05 1.24 7.85 -51.93 -0.41 0.84 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.05 0.95 7.93 -51.93 -0.41 0.54 16 39 H 0.05 1.07 7.37 -51.93 -0.38 0.69 16 40 H 0.07 0.86 7.55 -51.93 -0.39 0.47 16 41 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 42 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 43 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 328.76 15.07 4.95 4.95 Total: -1.00 -28.35 328.76 -10.49 -38.84 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -8.12 Total: 1.07 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -1.21 Total: -18.22 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: -1.10 Total: -43.12 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.35 -10.49 -38.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393279641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.762 kcal (2) G-P(sol) polarization free energy of solvation -28.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds