Wall clock time and date at job start Mon Mar 30 2020 03:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46841 * 111.00281 * 2 1 4 4 C 1.53042 * 109.52629 * 174.16212 * 3 2 1 5 5 C 1.53117 * 109.27613 * 59.17734 * 4 3 2 6 6 N 1.46901 * 109.52200 * 182.38087 * 5 4 3 7 7 C 1.46899 * 110.99972 * 204.87813 * 6 5 4 8 8 H 1.08996 * 110.43290 * 327.53328 * 7 6 5 9 9 C 1.54885 * 110.48958 * 90.22364 * 7 6 5 10 10 C 1.54891 * 102.74781 * 156.62044 * 9 7 6 11 11 C 1.54259 * 104.19778 * 322.05491 * 10 9 7 12 12 H 1.08998 * 110.03370 * 264.32721 * 11 10 9 13 13 C 1.50696 * 110.03589 * 142.89279 * 11 10 9 14 14 H 1.07996 * 120.00467 * 242.83604 * 13 11 10 15 15 C 1.37887 * 119.99423 * 62.83461 * 13 11 10 16 16 N 1.31506 * 120.00224 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 119.99425 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47233 * 60.00584 * 17 15 13 19 19 H 1.48503 * 109.46497 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47399 * 299.99813 * 17 15 13 21 21 C 1.53879 * 106.59795 * 23.60853 * 11 10 9 22 22 C 1.53120 * 109.16267 * 302.34396 * 5 4 3 23 23 C 1.46850 * 110.99956 * 235.78688 * 2 1 3 24 24 H 1.08992 * 109.47342 * 60.00208 * 1 2 3 25 25 H 1.09008 * 109.47163 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46915 * 299.99697 * 1 2 3 27 27 H 1.08998 * 109.46320 * 54.14149 * 3 2 1 28 28 H 1.08998 * 109.45897 * 294.17759 * 3 2 1 29 29 H 1.09003 * 109.49792 * 299.23877 * 4 3 2 30 30 H 1.08997 * 109.53473 * 179.13824 * 4 3 2 31 31 H 1.09002 * 109.52261 * 62.25263 * 5 4 3 32 32 H 1.00896 * 111.00110 * 80.91649 * 6 5 4 33 33 H 1.09006 * 110.75369 * 274.93422 * 9 7 6 34 34 H 1.09000 * 110.75858 * 38.30298 * 9 7 6 35 35 H 1.09002 * 110.48280 * 203.37547 * 10 9 7 36 36 H 1.08999 * 110.59921 * 80.79081 * 10 9 7 37 37 H 0.97002 * 119.99855 * 180.02562 * 16 15 13 38 38 H 1.08991 * 110.03563 * 240.71393 * 21 11 10 39 39 H 1.09004 * 110.07077 * 119.30894 * 21 11 10 40 40 H 1.09002 * 109.50326 * 177.59202 * 22 5 4 41 41 H 1.08999 * 109.50267 * 297.71858 * 22 5 4 42 42 H 1.09002 * 109.46123 * 305.85896 * 23 2 1 43 43 H 1.08999 * 109.45959 * 65.82235 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 0.1467 5 6 4.1188 0.5369 -1.0144 6 7 5.5758 0.4497 -0.8483 7 6 6.2417 0.2449 -2.1415 8 1 5.6088 -0.3425 -2.8067 9 6 6.5982 1.6058 -2.7894 10 6 7.7611 1.2361 -3.7433 11 6 8.5716 0.1820 -2.9612 12 1 9.4023 0.6597 -2.4418 13 6 9.0897 -0.8741 -3.9031 14 1 8.7677 -1.8992 -3.7948 15 6 9.9750 -0.5314 -4.9031 16 7 10.3675 0.7168 -5.0346 17 14 10.6179 -1.8407 -6.0702 18 1 9.4794 -2.4595 -6.7955 19 1 11.5476 -1.2193 -7.0473 20 1 11.3374 -2.8839 -5.2960 21 6 7.6055 -0.4482 -1.9426 22 6 3.5181 -0.8716 -1.0208 23 6 1.9952 -0.7709 -1.1337 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.5634 1.9257 0.8329 28 1 1.7325 1.8607 -0.9376 29 1 3.7814 0.8566 1.0906 30 1 3.9105 2.3509 0.1314 31 1 3.8887 1.0353 -1.9561 32 1 5.8223 -0.2787 -0.1951 33 1 5.7504 2.0012 -3.3489 34 1 6.9299 2.3182 -2.0339 35 1 8.3757 2.1116 -3.9528 36 1 7.3763 0.8107 -4.6702 37 1 10.9901 0.9578 -5.7384 38 1 7.9674 -0.2764 -0.9290 39 1 7.5114 -1.5181 -2.1288 40 1 3.9098 -1.4304 -1.8708 41 1 3.7814 -1.3837 -0.0953 42 1 1.5633 -1.7716 -1.1242 43 1 1.7324 -0.2710 -2.0660 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393279641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:17 Heat of formation + Delta-G solvation = -34.901187 kcal Electronic energy + Delta-G solvation = -19183.672301 eV Core-core repulsion = 16454.544568 eV Total energy + Delta-G solvation = -2729.127733 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.37325 -38.95635 -36.17766 -34.30597 -31.99930 -31.71699 -29.90142 -28.27235 -26.41761 -25.36684 -24.07798 -23.01567 -21.21757 -20.95397 -20.33370 -18.53412 -17.08284 -16.66939 -16.46805 -16.02304 -15.78621 -15.57205 -15.10915 -14.93970 -14.46559 -14.26999 -14.02352 -13.52623 -13.32125 -13.23262 -12.97985 -12.69375 -12.63338 -12.47650 -12.16942 -12.13985 -11.99675 -11.76195 -11.60654 -11.52346 -11.38454 -11.28536 -10.99494 -10.74212 -10.44807 -9.31371 -9.20684 -8.10671 -6.20588 1.40728 1.42118 1.49705 2.43609 3.00067 3.18442 3.24059 3.82270 3.91842 3.99752 4.09879 4.15256 4.26595 4.38728 4.40609 4.52679 4.60937 4.62395 4.69597 4.74856 4.82205 4.84316 4.90016 4.96474 5.02845 5.03935 5.06467 5.10514 5.22063 5.24201 5.32677 5.37854 5.45558 5.56019 5.66609 5.93636 5.98491 6.11463 6.14093 6.26185 6.41452 6.59534 6.91612 7.46391 8.98065 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.043136 B = 0.004094 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.959271 B = 6837.201349 C = 7137.755315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.554 5.554 3 C 0.058 3.942 4 C -0.096 4.096 5 C 0.088 3.912 6 N -0.676 5.676 7 C 0.100 3.900 8 H 0.040 0.960 9 C -0.102 4.102 10 C -0.084 4.084 11 C 0.038 3.962 12 H -0.007 1.007 13 C -0.532 4.532 14 H 0.053 0.947 15 C 0.009 3.991 16 N -0.920 5.920 17 Si 0.953 3.047 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.271 1.271 21 C -0.106 4.106 22 C -0.141 4.141 23 C 0.062 3.938 24 H 0.025 0.975 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.029 0.971 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.344 0.656 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.029 0.971 36 H 0.029 0.971 37 H 0.259 0.741 38 H 0.058 0.942 39 H 0.049 0.951 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.839 -0.619 9.465 21.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.279 5.279 3 C -0.070 4.070 4 C -0.135 4.135 5 C -0.022 4.022 6 N -0.306 5.306 7 C -0.010 4.010 8 H 0.058 0.942 9 C -0.140 4.140 10 C -0.123 4.123 11 C 0.020 3.980 12 H 0.011 0.989 13 C -0.571 4.571 14 H 0.071 0.929 15 C -0.189 4.189 16 N -0.560 5.560 17 Si 0.778 3.222 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.196 1.196 21 C -0.144 4.144 22 C -0.180 4.180 23 C -0.066 4.066 24 H 0.044 0.956 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.107 0.893 28 H 0.048 0.952 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.163 0.837 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -18.463 -0.053 9.789 20.897 hybrid contribution 0.374 -1.020 -1.912 2.199 sum -18.089 -1.073 7.876 19.759 Atomic orbital electron populations 1.22401 0.86162 1.02666 1.01117 1.61961 1.08640 1.14073 1.43261 1.22111 0.95120 0.88943 1.00825 1.21481 0.93526 1.00383 0.98084 1.21654 0.86799 0.95022 0.98727 1.60670 1.07067 1.52589 1.10319 1.22136 0.93707 0.95290 0.89843 0.94217 1.22469 0.97104 0.96823 0.97618 1.22035 0.95372 0.97982 0.96910 1.19177 0.92641 0.93523 0.92700 0.98925 1.21662 1.26251 0.94759 1.14383 0.92870 1.25798 0.96623 0.97233 0.99287 1.70101 1.33883 1.18414 1.33557 0.85698 0.78293 0.79442 0.78756 1.19587 1.21067 1.19577 1.22286 0.94713 0.98651 0.98788 1.22261 0.95607 0.97982 1.02147 1.21994 0.94709 0.98616 0.91307 0.95647 0.90761 0.90358 0.89315 0.95239 0.91300 0.91061 0.92163 0.83730 0.92558 0.91747 0.95216 0.95241 0.93169 0.92302 0.93233 0.92368 0.90901 0.89976 0.95342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.59 127.69 1.22 1.57 16 2 N -0.55 -10.35 4.91 -922.58 -4.53 -14.88 16 3 C 0.06 1.07 5.46 86.33 0.47 1.54 16 4 C -0.10 -2.03 5.70 30.65 0.17 -1.86 16 5 C 0.09 2.16 2.40 44.99 0.11 2.27 16 6 N -0.68 -19.48 6.08 -463.58 -2.82 -22.30 16 7 C 0.10 3.54 2.95 45.99 0.14 3.67 16 8 H 0.04 1.44 7.24 -2.39 -0.02 1.42 16 9 C -0.10 -3.94 6.57 31.88 0.21 -3.73 16 10 C -0.08 -4.12 5.44 31.67 0.17 -3.94 16 11 C 0.04 1.99 2.82 -10.82 -0.03 1.96 16 12 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 13 C -0.53 -29.98 8.36 25.60 0.21 -29.77 16 14 H 0.05 2.91 7.33 -2.91 -0.02 2.89 16 15 C 0.01 0.52 5.33 84.66 0.45 0.97 16 16 N -0.92 -54.94 12.43 21.45 0.27 -54.67 16 17 Si 0.95 44.35 29.54 68.60 2.03 46.38 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 21 C -0.11 -4.39 5.92 31.32 0.19 -4.20 16 22 C -0.14 -3.13 5.34 30.65 0.16 -2.97 16 23 C 0.06 1.22 5.46 86.33 0.47 1.69 16 24 H 0.02 0.35 8.14 -2.39 -0.02 0.33 16 25 H 0.07 0.94 8.09 -2.38 -0.02 0.92 16 26 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.09 1.37 8.12 -2.39 -0.02 1.35 16 28 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.06 1.64 7.86 -2.39 -0.02 1.62 16 32 H 0.34 9.28 8.05 -89.70 -0.72 8.56 16 33 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.03 1.56 7.97 -2.39 -0.02 1.54 16 36 H 0.03 1.51 7.85 -2.39 -0.02 1.49 16 37 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 38 H 0.06 2.28 7.93 -2.39 -0.02 2.26 16 39 H 0.05 2.04 7.37 -2.38 -0.02 2.03 16 40 H 0.06 1.40 7.55 -2.39 -0.02 1.38 16 41 H 0.07 1.62 8.10 -2.39 -0.02 1.60 16 42 H 0.08 1.44 8.09 -2.39 -0.02 1.42 16 43 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -60.95 328.76 -0.88 -61.83 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.23 Total: 16.44 kcal Atomic # 6 Polarization: -36.75 SS G_CDS: 3.95 Total: -32.80 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -7.08 Total: -91.85 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -60.95 -0.88 -61.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393279641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.924 kcal (2) G-P(sol) polarization free energy of solvation -60.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds