Wall clock time and date at job start Mon Mar 30 2020 04:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 111.00449 * 2 1 4 4 C 1.46900 * 111.00100 * 123.95770 * 2 1 3 5 5 C 1.53000 * 109.47352 * 163.47645 * 4 2 1 6 6 N 1.46901 * 112.85034 * 317.03334 * 5 4 2 7 7 C 1.46900 * 110.99891 * 293.90572 * 6 5 4 8 8 C 1.53002 * 109.47146 * 185.31219 * 7 6 5 9 9 C 1.50700 * 115.54837 * 31.83184 * 8 7 6 10 10 H 1.07999 * 120.00579 * 270.83500 * 9 8 7 11 11 C 1.37877 * 119.99685 * 90.83725 * 9 8 7 12 12 N 1.31515 * 120.00011 * 353.31253 * 11 9 8 13 13 Si 1.86794 * 120.00262 * 173.31160 * 11 9 8 14 14 H 1.48503 * 109.47166 * 60.00021 * 13 11 9 15 15 H 1.48495 * 109.47608 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47380 * 300.00333 * 13 11 9 17 17 C 1.53001 * 117.49993 * 246.13189 * 8 7 6 18 18 C 1.53000 * 60.00010 * 252.50639 * 17 8 7 19 19 C 1.53778 * 113.69256 * 88.30342 * 5 4 2 20 20 C 1.53781 * 87.08059 * 89.12520 * 19 5 4 21 21 C 1.53778 * 87.08074 * 25.43458 * 20 19 5 22 22 H 1.09004 * 109.47386 * 296.04529 * 1 2 3 23 23 H 1.09005 * 109.47302 * 56.04845 * 1 2 3 24 24 H 1.09006 * 109.47628 * 176.04577 * 1 2 3 25 25 H 1.08990 * 109.47207 * 190.79675 * 3 2 1 26 26 H 1.08999 * 109.46565 * 310.79496 * 3 2 1 27 27 H 1.08999 * 109.46505 * 70.79023 * 3 2 1 28 28 H 1.09008 * 109.47004 * 43.47455 * 4 2 1 29 29 H 1.08999 * 109.46874 * 283.48133 * 4 2 1 30 30 H 1.00906 * 110.99881 * 57.85468 * 6 5 4 31 31 H 1.09005 * 109.47498 * 65.31424 * 7 6 5 32 32 H 1.08991 * 109.47291 * 305.31289 * 7 6 5 33 33 H 0.97003 * 120.00388 * 180.02562 * 12 11 9 34 34 H 1.09006 * 117.49789 * 359.97438 * 17 8 7 35 35 H 1.08999 * 117.50265 * 145.01965 * 17 8 7 36 36 H 1.08993 * 117.50031 * 252.50947 * 18 17 8 37 37 H 1.08999 * 117.50130 * 107.48414 * 18 17 8 38 38 H 1.08995 * 113.61304 * 203.68009 * 19 5 4 39 39 H 1.08997 * 113.61116 * 334.57939 * 19 5 4 40 40 H 1.08996 * 113.61707 * 270.88273 * 20 19 5 41 41 H 1.09001 * 113.68579 * 139.99212 * 20 19 5 42 42 H 1.09004 * 113.61397 * 220.01861 * 21 20 19 43 43 H 1.09000 * 113.69323 * 89.12477 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.4693 -1.0955 0.8922 6 7 3.7347 -1.5320 -0.4851 7 6 3.0813 -2.8176 -0.7649 8 6 3.4869 -3.3033 -2.1580 9 6 4.8725 -2.9134 -2.6043 10 1 5.0294 -1.9809 -3.1260 11 6 5.9398 -3.7472 -2.3467 12 7 5.7736 -4.8164 -1.5991 13 14 7.6221 -3.3585 -3.0594 14 1 8.0749 -2.0332 -2.5654 15 1 8.5916 -4.4011 -2.6373 16 1 7.5376 -3.3316 -4.5418 17 6 2.3944 -3.3761 -3.2266 18 6 2.9536 -4.6624 -2.6155 19 6 4.4366 -0.0092 1.3913 20 6 4.4419 -0.7452 2.7416 21 6 4.0800 -2.0189 1.9596 22 1 -0.3634 0.4512 0.9233 23 1 -0.3634 0.5740 -0.8525 24 1 -0.3634 -1.0252 -0.0709 25 1 3.0680 1.3487 -0.1925 26 1 1.4989 1.9511 -0.7780 27 1 1.8100 1.8317 0.9705 28 1 1.4294 -1.6913 1.2456 29 1 1.9020 -0.1745 2.0483 30 1 3.4477 -0.8285 -1.1490 31 1 1.9993 -2.6917 -0.7249 32 1 3.3894 -3.5515 -0.0204 33 1 6.5246 -5.4029 -1.4174 34 1 1.3865 -3.0784 -2.9371 35 1 2.6776 -3.1419 -4.2528 36 1 3.6047 -5.2744 -3.2395 37 1 2.3138 -5.2106 -1.9239 38 1 5.4019 -0.0183 0.8853 39 1 3.9910 0.9844 1.4374 40 1 3.6582 -0.4135 3.4227 41 1 5.4234 -0.7868 3.2138 42 1 3.3465 -2.6476 2.4644 43 1 4.9470 -2.5784 1.6085 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393507664.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:45 Heat of formation + Delta-G solvation = 58.210259 kcal Electronic energy + Delta-G solvation = -20144.530673 eV Core-core repulsion = 17419.440555 eV Total energy + Delta-G solvation = -2725.090118 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.59405 -36.43736 -36.16653 -32.28345 -31.59544 -27.74152 -27.67162 -25.52244 -25.19578 -24.27425 -22.62518 -21.31877 -20.86038 -18.81782 -17.83369 -15.85204 -15.65606 -15.32577 -15.11082 -14.59376 -14.31046 -14.17396 -13.77229 -13.02684 -12.74473 -12.58963 -12.45283 -11.95882 -11.81707 -11.68025 -11.56198 -11.39502 -11.26908 -10.78238 -10.74591 -10.60569 -10.37391 -10.29383 -10.04750 -9.88373 -9.59604 -9.18189 -8.64035 -8.24155 -8.13118 -7.80454 -7.10904 -5.76179 -3.75357 3.46473 3.49843 3.53512 4.04981 4.62690 4.94725 5.04682 5.13727 5.19470 5.25166 5.38096 5.39712 5.49936 5.55623 5.58548 5.62977 5.78207 5.79368 5.91034 5.97243 6.01177 6.09383 6.23579 6.29417 6.39137 6.50067 6.54604 6.72470 6.79871 6.81669 6.88828 6.95263 7.13778 7.18209 7.23315 7.29569 7.66436 7.70691 8.13975 8.36996 8.64048 8.79276 9.20080 9.85457 11.33945 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019665 B = 0.007889 C = 0.006681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.480908 B = 3548.614098 C = 4189.980656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.538 5.538 3 C 0.023 3.977 4 C 0.047 3.953 5 C 0.091 3.909 6 N -0.625 5.625 7 C 0.116 3.884 8 C 0.050 3.950 9 C -0.456 4.456 10 H 0.054 0.946 11 C 0.072 3.928 12 N -0.885 5.885 13 Si 0.883 3.117 14 H -0.278 1.278 15 H -0.292 1.292 16 H -0.282 1.282 17 C -0.219 4.219 18 C -0.156 4.156 19 C -0.125 4.125 20 C -0.146 4.146 21 C -0.118 4.118 22 H 0.018 0.982 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.020 0.980 28 H 0.070 0.930 29 H 0.031 0.969 30 H 0.339 0.661 31 H -0.004 1.004 32 H 0.057 0.943 33 H 0.254 0.746 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.091 0.909 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.523 9.109 7.027 13.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.262 5.262 3 C -0.126 4.126 4 C -0.083 4.083 5 C -0.002 4.002 6 N -0.253 5.253 7 C -0.013 4.013 8 C 0.049 3.951 9 C -0.494 4.494 10 H 0.072 0.928 11 C -0.129 4.129 12 N -0.523 5.523 13 Si 0.712 3.288 14 H -0.204 1.204 15 H -0.218 1.218 16 H -0.208 1.208 17 C -0.256 4.256 18 C -0.194 4.194 19 C -0.163 4.163 20 C -0.183 4.183 21 C -0.156 4.156 22 H 0.037 0.963 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.097 0.903 26 H 0.081 0.919 27 H 0.038 0.962 28 H 0.088 0.912 29 H 0.050 0.950 30 H 0.158 0.842 31 H 0.014 0.986 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.075 0.925 38 H 0.109 0.891 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.650 8.428 6.807 12.712 hybrid contribution -0.391 0.710 0.354 0.884 sum -7.041 9.138 7.161 13.578 Atomic orbital electron populations 1.22351 0.87751 1.02086 0.99816 1.61782 1.07283 1.13684 1.43423 1.22532 1.01913 0.88684 0.99425 1.22575 0.97628 0.97438 0.90642 1.22236 0.90115 0.95880 0.92018 1.60743 1.60074 1.04810 0.99721 1.21302 0.91646 0.90382 0.97959 1.18903 0.92256 0.94883 0.89040 1.20091 0.89628 1.04349 1.35340 0.92780 1.24826 0.97897 0.95294 0.94897 1.70019 1.30624 1.14492 1.37157 0.86821 0.84891 0.77789 0.79286 1.20398 1.21820 1.20824 1.23103 0.97634 1.05328 0.99540 1.22422 1.02398 0.91276 1.03255 1.23088 1.00796 0.96473 0.95917 1.22768 1.00920 0.98245 0.96412 1.22944 1.01420 0.95641 0.95575 0.96309 0.91535 0.91571 0.90342 0.91912 0.96174 0.91169 0.95038 0.84163 0.98585 0.92449 0.93674 0.92261 0.90925 0.90136 0.92528 0.89074 0.92544 0.91339 0.91764 0.92774 0.88376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.52 60.06 0.57 0.91 16 2 N -0.54 -7.62 3.98 -251.26 -1.00 -8.62 16 3 C 0.02 0.28 8.46 60.06 0.51 0.79 16 4 C 0.05 0.69 3.83 -3.82 -0.01 0.68 16 5 C 0.09 1.50 0.59 -130.79 -0.08 1.42 16 6 N -0.62 -12.73 5.36 -99.14 -0.53 -13.26 16 7 C 0.12 2.61 5.45 -3.82 -0.02 2.58 16 8 C 0.05 1.24 1.90 -155.66 -0.30 0.94 16 9 C -0.46 -12.46 8.01 -34.44 -0.28 -12.74 16 10 H 0.05 1.50 7.82 -52.49 -0.41 1.09 16 11 C 0.07 2.01 5.36 -17.82 -0.10 1.91 16 12 N -0.88 -25.51 12.68 55.43 0.70 -24.80 16 13 Si 0.88 21.84 29.54 -169.99 -5.02 16.82 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 17 C -0.22 -4.98 9.88 -26.73 -0.26 -5.24 16 18 C -0.16 -3.81 9.12 -26.73 -0.24 -4.05 16 19 C -0.12 -1.86 6.55 -25.92 -0.17 -2.03 16 20 C -0.15 -2.00 7.74 -25.92 -0.20 -2.20 16 21 C -0.12 -1.95 6.42 -25.92 -0.17 -2.11 16 22 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 23 H 0.07 0.73 8.05 -51.93 -0.42 0.32 16 24 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 25 H 0.08 1.04 6.12 -51.93 -0.32 0.72 16 26 H 0.06 0.70 8.00 -51.93 -0.42 0.29 16 27 H 0.02 0.23 7.97 -51.93 -0.41 -0.19 16 28 H 0.07 1.09 7.65 -51.92 -0.40 0.69 16 29 H 0.03 0.43 7.19 -51.93 -0.37 0.06 16 30 H 0.34 7.00 7.94 -39.29 -0.31 6.69 16 31 H 0.00 -0.08 7.19 -51.93 -0.37 -0.46 16 32 H 0.06 1.40 7.32 -51.93 -0.38 1.02 16 33 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.06 1.24 8.04 -51.93 -0.42 0.82 16 35 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 36 H 0.08 2.12 8.14 -51.93 -0.42 1.69 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 39 H 0.06 0.75 6.18 -51.93 -0.32 0.43 16 40 H 0.07 0.84 7.73 -51.93 -0.40 0.43 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.05 0.85 8.10 -51.93 -0.42 0.43 16 43 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 LS Contribution 334.39 15.07 5.04 5.04 Total: -1.00 -28.22 334.39 -9.44 -37.66 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -7.89 Total: 6.28 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: -0.74 Total: -19.12 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: -0.83 Total: -46.69 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.22 -9.44 -37.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393507664.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.875 kcal (2) G-P(sol) polarization free energy of solvation -28.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds