Wall clock time and date at job start Mon Mar 30 2020 04:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 111.00449 * 2 1 4 4 C 1.46900 * 111.00100 * 123.95770 * 2 1 3 5 5 C 1.53000 * 109.47352 * 163.47645 * 4 2 1 6 6 N 1.46901 * 112.85034 * 317.03334 * 5 4 2 7 7 C 1.46900 * 110.99891 * 293.90572 * 6 5 4 8 8 C 1.53002 * 109.47146 * 185.31219 * 7 6 5 9 9 C 1.50700 * 115.54837 * 31.83184 * 8 7 6 10 10 H 1.07999 * 120.00579 * 270.83500 * 9 8 7 11 11 C 1.37877 * 119.99685 * 90.83725 * 9 8 7 12 12 N 1.31515 * 120.00011 * 353.31253 * 11 9 8 13 13 Si 1.86794 * 120.00262 * 173.31160 * 11 9 8 14 14 H 1.48503 * 109.47166 * 60.00021 * 13 11 9 15 15 H 1.48495 * 109.47608 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47380 * 300.00333 * 13 11 9 17 17 C 1.53001 * 117.49993 * 246.13189 * 8 7 6 18 18 C 1.53000 * 60.00010 * 252.50639 * 17 8 7 19 19 C 1.53778 * 113.69256 * 88.30342 * 5 4 2 20 20 C 1.53781 * 87.08059 * 89.12520 * 19 5 4 21 21 C 1.53778 * 87.08074 * 25.43458 * 20 19 5 22 22 H 1.09004 * 109.47386 * 296.04529 * 1 2 3 23 23 H 1.09005 * 109.47302 * 56.04845 * 1 2 3 24 24 H 1.09006 * 109.47628 * 176.04577 * 1 2 3 25 25 H 1.08990 * 109.47207 * 190.79675 * 3 2 1 26 26 H 1.08999 * 109.46565 * 310.79496 * 3 2 1 27 27 H 1.08999 * 109.46505 * 70.79023 * 3 2 1 28 28 H 1.09008 * 109.47004 * 43.47455 * 4 2 1 29 29 H 1.08999 * 109.46874 * 283.48133 * 4 2 1 30 30 H 1.00906 * 110.99881 * 57.85468 * 6 5 4 31 31 H 1.09005 * 109.47498 * 65.31424 * 7 6 5 32 32 H 1.08991 * 109.47291 * 305.31289 * 7 6 5 33 33 H 0.97003 * 120.00388 * 180.02562 * 12 11 9 34 34 H 1.09006 * 117.49789 * 359.97438 * 17 8 7 35 35 H 1.08999 * 117.50265 * 145.01965 * 17 8 7 36 36 H 1.08993 * 117.50031 * 252.50947 * 18 17 8 37 37 H 1.08999 * 117.50130 * 107.48414 * 18 17 8 38 38 H 1.08995 * 113.61304 * 203.68009 * 19 5 4 39 39 H 1.08997 * 113.61116 * 334.57939 * 19 5 4 40 40 H 1.08996 * 113.61707 * 270.88273 * 20 19 5 41 41 H 1.09001 * 113.68579 * 139.99212 * 20 19 5 42 42 H 1.09004 * 113.61397 * 220.01861 * 21 20 19 43 43 H 1.09000 * 113.69323 * 89.12477 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.4693 -1.0955 0.8922 6 7 3.7347 -1.5320 -0.4851 7 6 3.0813 -2.8176 -0.7649 8 6 3.4869 -3.3033 -2.1580 9 6 4.8725 -2.9134 -2.6043 10 1 5.0294 -1.9809 -3.1260 11 6 5.9398 -3.7472 -2.3467 12 7 5.7736 -4.8164 -1.5991 13 14 7.6221 -3.3585 -3.0594 14 1 8.0749 -2.0332 -2.5654 15 1 8.5916 -4.4011 -2.6373 16 1 7.5376 -3.3316 -4.5418 17 6 2.3944 -3.3761 -3.2266 18 6 2.9536 -4.6624 -2.6155 19 6 4.4366 -0.0092 1.3913 20 6 4.4419 -0.7452 2.7416 21 6 4.0800 -2.0189 1.9596 22 1 -0.3634 0.4512 0.9233 23 1 -0.3634 0.5740 -0.8525 24 1 -0.3634 -1.0252 -0.0709 25 1 3.0680 1.3487 -0.1925 26 1 1.4989 1.9511 -0.7780 27 1 1.8100 1.8317 0.9705 28 1 1.4294 -1.6913 1.2456 29 1 1.9020 -0.1745 2.0483 30 1 3.4477 -0.8285 -1.1490 31 1 1.9993 -2.6917 -0.7249 32 1 3.3894 -3.5515 -0.0204 33 1 6.5246 -5.4029 -1.4174 34 1 1.3865 -3.0784 -2.9371 35 1 2.6776 -3.1419 -4.2528 36 1 3.6047 -5.2744 -3.2395 37 1 2.3138 -5.2106 -1.9239 38 1 5.4019 -0.0183 0.8853 39 1 3.9910 0.9844 1.4374 40 1 3.6582 -0.4135 3.4227 41 1 5.4234 -0.7868 3.2138 42 1 3.3465 -2.6476 2.4644 43 1 4.9470 -2.5784 1.6085 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393507664.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:44 Heat of formation + Delta-G solvation = 41.528782 kcal Electronic energy + Delta-G solvation = -20145.254036 eV Core-core repulsion = 17419.440555 eV Total energy + Delta-G solvation = -2725.813481 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.86608 -38.30694 -37.25525 -33.95957 -33.64113 -28.94521 -28.65017 -27.44061 -26.65382 -25.82337 -23.88378 -22.82034 -22.41260 -20.80573 -19.11667 -17.79833 -17.02952 -16.61727 -16.39910 -16.19874 -15.89744 -15.42244 -15.21343 -14.69793 -14.41373 -14.03711 -13.56650 -13.41450 -13.10508 -13.08940 -12.79468 -12.78260 -12.74734 -12.56576 -12.53432 -12.34304 -11.95248 -11.89242 -11.73102 -11.33355 -10.97895 -10.88187 -10.63611 -10.21093 -9.75260 -9.27104 -8.66744 -7.90567 -5.93898 1.47041 1.48064 1.54024 2.55724 3.00151 3.39158 3.58870 3.71929 3.77087 3.94739 3.98375 4.07067 4.31954 4.42549 4.51235 4.53846 4.56545 4.63163 4.68355 4.77243 4.81038 4.88407 4.92378 4.96730 4.97381 5.02443 5.07775 5.10749 5.13264 5.20455 5.25676 5.35434 5.50769 5.60379 5.73117 5.81712 5.96447 6.13111 6.17845 6.55326 6.83262 7.05516 7.12212 7.68821 9.18483 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019665 B = 0.007889 C = 0.006681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.480908 B = 3548.614098 C = 4189.980656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.560 5.560 3 C 0.025 3.975 4 C 0.058 3.942 5 C 0.086 3.914 6 N -0.640 5.640 7 C 0.138 3.862 8 C 0.025 3.975 9 C -0.459 4.459 10 H 0.045 0.955 11 C 0.027 3.973 12 N -0.911 5.911 13 Si 0.938 3.062 14 H -0.276 1.276 15 H -0.293 1.293 16 H -0.278 1.278 17 C -0.193 4.193 18 C -0.163 4.163 19 C -0.119 4.119 20 C -0.126 4.126 21 C -0.127 4.127 22 H 0.033 0.967 23 H 0.076 0.924 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.034 0.966 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.337 0.663 31 H 0.005 0.995 32 H 0.028 0.972 33 H 0.250 0.750 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.071 0.929 42 H 0.058 0.942 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.525 11.010 7.670 15.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.284 5.284 3 C -0.123 4.123 4 C -0.072 4.072 5 C -0.007 4.007 6 N -0.269 5.269 7 C 0.009 3.991 8 C 0.024 3.976 9 C -0.498 4.498 10 H 0.063 0.937 11 C -0.172 4.172 12 N -0.551 5.551 13 Si 0.766 3.234 14 H -0.202 1.202 15 H -0.219 1.219 16 H -0.204 1.204 17 C -0.230 4.230 18 C -0.201 4.201 19 C -0.157 4.157 20 C -0.164 4.164 21 C -0.165 4.165 22 H 0.051 0.949 23 H 0.095 0.905 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.156 0.844 31 H 0.023 0.977 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.113 0.887 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.658 10.346 7.446 14.871 hybrid contribution -0.107 0.130 0.132 0.214 sum -7.765 10.477 7.578 15.083 Atomic orbital electron populations 1.22351 0.86426 1.01975 1.01006 1.61733 1.08618 1.14712 1.43314 1.22513 1.01180 0.87964 1.00635 1.22367 0.95543 0.97490 0.91762 1.22406 0.92118 0.96467 0.89696 1.60643 1.60483 1.04001 1.01772 1.20919 0.91983 0.90728 0.95504 1.19094 0.92156 0.95374 0.90950 1.20283 0.91064 1.03754 1.34656 0.93676 1.25434 1.00918 0.95408 0.95424 1.70136 1.31190 1.15357 1.38419 0.85939 0.81334 0.77439 0.78687 1.20151 1.21863 1.20361 1.23059 0.98067 1.03051 0.98814 1.22315 1.02704 0.91469 1.03639 1.23001 0.99301 0.97252 0.96149 1.22722 1.02188 0.95461 0.96012 1.22886 1.00154 0.96740 0.96741 0.94885 0.90538 0.92351 0.91574 0.90799 0.94748 0.92286 0.93159 0.84386 0.97689 0.95348 0.94075 0.89824 0.90986 0.92641 0.91635 0.91291 0.90291 0.88667 0.91063 0.92284 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 9.52 127.69 1.22 1.87 16 2 N -0.56 -14.51 3.98 -948.85 -3.77 -18.28 16 3 C 0.02 0.55 8.46 127.69 1.08 1.63 16 4 C 0.06 1.59 3.83 86.30 0.33 1.92 16 5 C 0.09 2.76 0.59 4.05 0.00 2.76 16 6 N -0.64 -26.12 5.36 -467.58 -2.51 -28.62 16 7 C 0.14 6.24 5.45 86.30 0.47 6.71 16 8 C 0.02 1.24 1.90 -52.93 -0.10 1.14 16 9 C -0.46 -25.36 8.01 25.60 0.21 -25.16 16 10 H 0.05 2.52 7.82 -2.91 -0.02 2.50 16 11 C 0.03 1.50 5.36 84.65 0.45 1.95 16 12 N -0.91 -53.81 12.68 21.45 0.27 -53.54 16 13 Si 0.94 45.43 29.54 68.60 2.03 47.45 16 14 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 15 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 16 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 17 C -0.19 -8.56 9.88 30.59 0.30 -8.26 16 18 C -0.16 -8.04 9.12 30.59 0.28 -7.76 16 19 C -0.12 -3.36 6.55 31.12 0.20 -3.16 16 20 C -0.13 -3.19 7.74 31.12 0.24 -2.95 16 21 C -0.13 -4.19 6.42 31.12 0.20 -3.99 16 22 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 23 H 0.08 1.47 8.05 -2.38 -0.02 1.45 16 24 H 0.06 1.33 8.08 -2.38 -0.02 1.31 16 25 H 0.07 1.61 6.12 -2.39 -0.01 1.59 16 26 H 0.07 1.44 8.00 -2.39 -0.02 1.42 16 27 H 0.03 0.65 7.97 -2.39 -0.02 0.64 16 28 H 0.06 1.73 7.65 -2.38 -0.02 1.71 16 29 H 0.05 1.19 7.19 -2.39 -0.02 1.17 16 30 H 0.34 13.79 7.94 -89.69 -0.71 13.08 16 31 H 0.01 0.22 7.19 -2.38 -0.02 0.20 16 32 H 0.03 1.42 7.32 -2.39 -0.02 1.41 16 33 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 34 H 0.08 3.31 8.04 -2.38 -0.02 3.29 16 35 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 36 H 0.05 2.98 8.14 -2.39 -0.02 2.96 16 37 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 38 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.08 1.87 6.18 -2.39 -0.01 1.85 16 40 H 0.09 1.95 7.73 -2.39 -0.02 1.94 16 41 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.06 1.84 8.10 -2.39 -0.02 1.82 16 43 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -60.67 334.39 1.15 -59.53 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.25 Total: 26.76 kcal Atomic # 6 Polarization: -38.18 SS G_CDS: 4.88 Total: -33.30 kcal Atomic # 7 Polarization: -94.44 SS G_CDS: -6.01 Total: -100.45 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -60.67 1.15 -59.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393507664.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.056 kcal (2) G-P(sol) polarization free energy of solvation -60.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds