Wall clock time and date at job start Mon Mar 30 2020 04:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46914 * 1 3 3 C 1.44452 * 111.18845 * 2 1 4 4 C 1.51132 * 112.90860 * 217.77787 * 3 2 1 5 5 C 1.50648 * 115.20283 * 289.35030 * 4 3 2 6 6 H 1.09869 * 111.49052 * 178.82200 * 5 4 3 7 7 C 1.54292 * 107.95280 * 302.04412 * 5 4 3 8 8 C 1.54078 * 104.88725 * 89.90527 * 7 5 4 9 9 C 1.51495 * 105.46755 * 9.90656 * 8 7 5 10 10 H 1.09474 * 107.21354 * 123.96780 * 9 8 7 11 11 C 1.50208 * 111.05359 * 126.11370 * 2 1 3 12 12 N 1.48094 * 110.01342 * 8.14560 * 9 8 7 13 13 C 1.46864 * 111.13942 * 96.90475 * 12 9 8 14 14 C 1.53005 * 109.47239 * 69.87801 * 13 12 9 15 15 C 1.52995 * 109.47170 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46986 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00037 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00130 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99878 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00192 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46607 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47013 * 119.99397 * 20 18 16 23 23 H 1.48490 * 109.47165 * 239.99783 * 20 18 16 24 24 H 1.09000 * 109.46938 * 63.95822 * 1 2 3 25 25 H 1.09006 * 109.46946 * 183.95669 * 1 2 3 26 26 H 1.08996 * 109.47291 * 303.95910 * 1 2 3 27 27 H 1.09592 * 108.28109 * 337.58127 * 3 2 1 28 28 H 1.08685 * 109.76195 * 95.11002 * 3 2 1 29 29 H 1.09256 * 108.36732 * 50.87665 * 4 3 2 30 30 H 1.09198 * 108.43031 * 167.65635 * 4 3 2 31 31 H 1.09421 * 110.71942 * 209.18090 * 7 5 4 32 32 H 1.09435 * 110.70479 * 330.66059 * 7 5 4 33 33 H 1.09029 * 110.85400 * 249.80165 * 8 7 5 34 34 H 1.09482 * 110.10136 * 128.71948 * 8 7 5 35 35 H 1.09086 * 109.34557 * 308.23520 * 11 2 1 36 36 H 1.09097 * 109.32581 * 67.59896 * 11 2 1 37 37 H 1.08997 * 109.46806 * 189.87389 * 13 12 9 38 38 H 1.09001 * 109.47574 * 309.87519 * 13 12 9 39 39 H 1.09004 * 109.46511 * 299.99400 * 14 13 12 40 40 H 1.09001 * 109.47068 * 59.99408 * 14 13 12 41 41 H 1.08996 * 109.47701 * 299.99834 * 15 14 13 42 42 H 1.09009 * 109.46931 * 60.00017 * 15 14 13 43 43 H 0.96999 * 119.99958 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9912 1.3469 0.0000 4 6 3.2298 1.4977 -0.8528 5 6 4.4693 0.8388 -0.3060 6 1 5.3256 0.9682 -0.9822 7 6 4.7463 1.4321 1.0911 8 6 3.9771 0.5216 2.0674 9 6 3.5197 -0.6624 1.2405 10 1 3.9040 -1.5649 1.7266 11 6 2.0087 -0.8262 1.1324 12 7 4.1324 -0.6068 -0.1066 13 6 5.3324 -1.4504 -0.1779 14 6 4.9243 -2.9238 -0.1178 15 6 6.1744 -3.8027 -0.1927 16 6 5.7725 -5.2539 -0.1329 17 1 4.7297 -5.5224 -0.0501 18 6 6.7360 -6.2388 -0.1837 19 7 8.0059 -5.9118 -0.2850 20 14 6.2377 -8.0377 -0.1103 21 1 4.7603 -8.1378 0.0013 22 1 6.6892 -8.7272 -1.3456 23 1 6.8674 -8.6779 1.0723 24 1 -0.3633 0.4512 -0.9233 25 1 -0.3633 -1.0253 0.0709 26 1 -0.3633 0.5740 0.8523 27 1 1.2186 2.0151 -0.3969 28 1 2.2090 1.6566 1.0188 29 1 3.0223 1.0755 -1.8389 30 1 3.4329 2.5629 -0.9813 31 1 5.8176 1.4155 1.3133 32 1 4.3783 2.4608 1.1546 33 1 3.1249 1.0473 2.4988 34 1 4.6405 0.1865 2.8714 35 1 1.5441 -0.5067 2.0663 36 1 1.7723 -1.8768 0.9575 37 1 5.8576 -1.2568 -1.1132 38 1 5.9887 -1.2207 0.6615 39 1 4.3992 -3.1174 0.8176 40 1 4.2681 -3.1536 -0.9573 41 1 6.6993 -3.6091 -1.1281 42 1 6.8309 -3.5730 0.6466 43 1 8.6837 -6.6047 -0.3212 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394363788.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:08 Heat of formation + Delta-G solvation = 3.558497 kcal Electronic energy + Delta-G solvation = -19693.728418 eV Core-core repulsion = 16966.268422 eV Total energy + Delta-G solvation = -2727.459996 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.37943 -36.28475 -34.28639 -32.84864 -32.08188 -29.98885 -28.78964 -26.66311 -25.46615 -24.65386 -22.53901 -21.33566 -20.32681 -19.34444 -19.09412 -16.72593 -16.01589 -15.53814 -15.28225 -14.45734 -14.39929 -14.27335 -14.06598 -13.34275 -13.19728 -12.97899 -12.41583 -12.25080 -12.09067 -11.89369 -11.86648 -11.44349 -11.37668 -11.02867 -10.91653 -10.74011 -10.66494 -10.47633 -10.43853 -10.28637 -10.02117 -9.54728 -9.23535 -8.96129 -8.28928 -8.08782 -7.96286 -5.94378 -3.95822 3.34761 3.41993 3.46873 3.86037 4.31910 4.51880 4.66062 4.71552 4.92324 5.00679 5.22400 5.28304 5.30546 5.36537 5.41566 5.50519 5.54267 5.63994 5.67521 5.77274 5.81802 5.86439 5.89012 5.94216 6.00540 6.06995 6.14381 6.25743 6.28882 6.42745 6.46649 6.80919 6.89276 7.10614 7.22872 7.33804 7.40020 7.58454 7.76357 7.91685 8.07125 8.51058 9.11837 9.67912 11.17198 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.029805 B = 0.004820 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.215106 B = 5807.492954 C = 6296.588607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.532 5.532 3 C 0.072 3.928 4 C -0.099 4.099 5 C 0.064 3.936 6 H 0.086 0.914 7 C -0.144 4.144 8 C -0.134 4.134 9 C 0.054 3.946 10 H 0.075 0.925 11 C 0.084 3.916 12 N -0.477 5.477 13 C 0.045 3.955 14 C -0.101 4.101 15 C 0.021 3.979 16 C -0.515 4.515 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.890 3.110 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.285 1.285 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.016 0.984 27 H 0.053 0.947 28 H 0.035 0.965 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.030 0.970 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.026 0.974 39 H 0.043 0.957 40 H 0.056 0.944 41 H 0.015 0.985 42 H 0.012 0.988 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.335 16.924 2.955 20.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.256 5.256 3 C -0.057 4.057 4 C -0.137 4.137 5 C -0.045 4.045 6 H 0.104 0.896 7 C -0.183 4.183 8 C -0.173 4.173 9 C -0.056 4.056 10 H 0.093 0.907 11 C -0.043 4.043 12 N -0.199 5.199 13 C -0.082 4.082 14 C -0.138 4.138 15 C -0.016 4.016 16 C -0.553 4.553 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.718 3.282 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.211 1.211 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.034 0.966 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.048 0.952 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.044 0.956 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.033 0.967 42 H 0.030 0.970 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.370 16.417 2.090 20.079 hybrid contribution 0.247 -0.403 1.476 1.550 sum -11.123 16.014 3.566 19.822 Atomic orbital electron populations 1.22363 0.87878 1.01609 0.99914 1.61266 1.05865 1.13218 1.45295 1.21095 0.96561 0.89206 0.98819 1.20781 0.93895 0.98349 1.00723 1.22697 0.97088 0.89226 0.95477 0.89607 1.22909 1.00219 0.99335 0.95845 1.22263 0.99983 0.96737 0.98330 1.22000 0.94816 0.98582 0.90153 0.90688 1.22530 0.93132 0.98276 0.90341 1.65459 1.25100 1.04378 1.24992 1.22465 0.90531 0.95100 1.00145 1.21609 1.00372 0.91332 1.00530 1.19080 0.91980 0.93584 0.96973 1.21304 0.93058 0.91408 1.49562 0.92661 1.25028 0.94978 0.99053 0.95482 1.69982 0.99814 1.32848 1.51081 0.86561 0.78693 0.85388 0.77525 1.19727 1.21033 1.21118 0.91745 0.91566 0.96598 0.92823 0.94661 0.91062 0.92681 0.91922 0.91319 0.91554 0.91585 0.95155 0.90275 0.91294 0.95610 0.93795 0.92534 0.96654 0.96991 0.93170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.35 60.07 0.56 0.88 16 2 N -0.53 -6.83 4.52 -243.39 -1.10 -7.93 16 3 C 0.07 0.82 4.92 -6.07 -0.03 0.79 16 4 C -0.10 -1.16 4.82 -28.85 -0.14 -1.29 16 5 C 0.06 0.83 3.40 -66.61 -0.23 0.60 16 6 H 0.09 1.10 7.95 -51.43 -0.41 0.70 16 7 C -0.14 -1.64 5.96 -25.49 -0.15 -1.80 16 8 C -0.13 -1.61 5.70 -26.93 -0.15 -1.76 16 9 C 0.05 0.77 2.12 -68.14 -0.14 0.62 16 10 H 0.07 1.20 5.98 -51.66 -0.31 0.89 16 11 C 0.08 1.12 5.37 -2.29 -0.01 1.10 16 12 N -0.48 -7.48 4.35 -216.75 -0.94 -8.42 16 13 C 0.05 0.82 4.70 -3.84 -0.02 0.81 16 14 C -0.10 -2.17 5.17 -26.73 -0.14 -2.31 16 15 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 16 C -0.51 -14.97 9.11 -34.44 -0.31 -15.28 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 20 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 24 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 25 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 26 H 0.02 0.15 8.13 -51.93 -0.42 -0.27 16 27 H 0.05 0.54 7.61 -51.59 -0.39 0.15 16 28 H 0.04 0.39 4.98 -52.11 -0.26 0.13 16 29 H 0.07 0.94 8.16 -51.78 -0.42 0.52 16 30 H 0.05 0.53 8.14 -51.82 -0.42 0.11 16 31 H 0.06 0.72 8.18 -51.69 -0.42 0.30 16 32 H 0.07 0.68 7.79 -51.68 -0.40 0.27 16 33 H 0.07 0.72 6.49 -51.91 -0.34 0.38 16 34 H 0.07 0.79 8.18 -51.66 -0.42 0.36 16 35 H 0.03 0.36 7.87 -51.88 -0.41 -0.05 16 36 H 0.08 1.13 8.15 -51.87 -0.42 0.71 16 37 H 0.07 1.26 8.01 -51.93 -0.42 0.85 16 38 H 0.03 0.47 8.09 -51.93 -0.42 0.05 16 39 H 0.04 0.94 6.59 -51.93 -0.34 0.59 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.01 0.33 8.14 -51.92 -0.42 -0.09 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 321.04 15.07 4.84 4.84 Total: -1.00 -30.72 321.04 -10.37 -41.09 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -7.88 Total: -4.19 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -1.00 Total: -15.69 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: -1.31 Total: -43.12 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.72 -10.37 -41.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394363788.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.650 kcal (2) G-P(sol) polarization free energy of solvation -30.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds