Wall clock time and date at job start Mon Mar 30 2020 04:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46914 * 1 3 3 C 1.44452 * 111.18845 * 2 1 4 4 C 1.51132 * 112.90860 * 217.77787 * 3 2 1 5 5 C 1.50648 * 115.20283 * 289.35030 * 4 3 2 6 6 H 1.09869 * 111.49052 * 178.82200 * 5 4 3 7 7 C 1.54292 * 107.95280 * 302.04412 * 5 4 3 8 8 C 1.54078 * 104.88725 * 89.90527 * 7 5 4 9 9 C 1.51495 * 105.46755 * 9.90656 * 8 7 5 10 10 H 1.09474 * 107.21354 * 123.96780 * 9 8 7 11 11 C 1.50208 * 111.05359 * 126.11370 * 2 1 3 12 12 N 1.48094 * 110.01342 * 8.14560 * 9 8 7 13 13 C 1.46864 * 111.13942 * 96.90475 * 12 9 8 14 14 C 1.53005 * 109.47239 * 69.87801 * 13 12 9 15 15 C 1.52995 * 109.47170 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46986 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00037 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00130 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99878 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00192 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46607 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47013 * 119.99397 * 20 18 16 23 23 H 1.48490 * 109.47165 * 239.99783 * 20 18 16 24 24 H 1.09000 * 109.46938 * 63.95822 * 1 2 3 25 25 H 1.09006 * 109.46946 * 183.95669 * 1 2 3 26 26 H 1.08996 * 109.47291 * 303.95910 * 1 2 3 27 27 H 1.09592 * 108.28109 * 337.58127 * 3 2 1 28 28 H 1.08685 * 109.76195 * 95.11002 * 3 2 1 29 29 H 1.09256 * 108.36732 * 50.87665 * 4 3 2 30 30 H 1.09198 * 108.43031 * 167.65635 * 4 3 2 31 31 H 1.09421 * 110.71942 * 209.18090 * 7 5 4 32 32 H 1.09435 * 110.70479 * 330.66059 * 7 5 4 33 33 H 1.09029 * 110.85400 * 249.80165 * 8 7 5 34 34 H 1.09482 * 110.10136 * 128.71948 * 8 7 5 35 35 H 1.09086 * 109.34557 * 308.23520 * 11 2 1 36 36 H 1.09097 * 109.32581 * 67.59896 * 11 2 1 37 37 H 1.08997 * 109.46806 * 189.87389 * 13 12 9 38 38 H 1.09001 * 109.47574 * 309.87519 * 13 12 9 39 39 H 1.09004 * 109.46511 * 299.99400 * 14 13 12 40 40 H 1.09001 * 109.47068 * 59.99408 * 14 13 12 41 41 H 1.08996 * 109.47701 * 299.99834 * 15 14 13 42 42 H 1.09009 * 109.46931 * 60.00017 * 15 14 13 43 43 H 0.96999 * 119.99958 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9912 1.3469 0.0000 4 6 3.2298 1.4977 -0.8528 5 6 4.4693 0.8388 -0.3060 6 1 5.3256 0.9682 -0.9822 7 6 4.7463 1.4321 1.0911 8 6 3.9771 0.5216 2.0674 9 6 3.5197 -0.6624 1.2405 10 1 3.9040 -1.5649 1.7266 11 6 2.0087 -0.8262 1.1324 12 7 4.1324 -0.6068 -0.1066 13 6 5.3324 -1.4504 -0.1779 14 6 4.9243 -2.9238 -0.1178 15 6 6.1744 -3.8027 -0.1927 16 6 5.7725 -5.2539 -0.1329 17 1 4.7297 -5.5224 -0.0501 18 6 6.7360 -6.2388 -0.1837 19 7 8.0059 -5.9118 -0.2850 20 14 6.2377 -8.0377 -0.1103 21 1 4.7603 -8.1378 0.0013 22 1 6.6892 -8.7272 -1.3456 23 1 6.8674 -8.6779 1.0723 24 1 -0.3633 0.4512 -0.9233 25 1 -0.3633 -1.0253 0.0709 26 1 -0.3633 0.5740 0.8523 27 1 1.2186 2.0151 -0.3969 28 1 2.2090 1.6566 1.0188 29 1 3.0223 1.0755 -1.8389 30 1 3.4329 2.5629 -0.9813 31 1 5.8176 1.4155 1.3133 32 1 4.3783 2.4608 1.1546 33 1 3.1249 1.0473 2.4988 34 1 4.6405 0.1865 2.8714 35 1 1.5441 -0.5067 2.0663 36 1 1.7723 -1.8768 0.9575 37 1 5.8576 -1.2568 -1.1132 38 1 5.9887 -1.2207 0.6615 39 1 4.3992 -3.1174 0.8176 40 1 4.2681 -3.1536 -0.9573 41 1 6.6993 -3.6091 -1.1281 42 1 6.8309 -3.5730 0.6466 43 1 8.6837 -6.6047 -0.3212 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394363788.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:07 Heat of formation + Delta-G solvation = -16.217427 kcal Electronic energy + Delta-G solvation = -19694.585966 eV Core-core repulsion = 16966.268422 eV Total energy + Delta-G solvation = -2728.317544 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.44061 -37.38975 -36.02263 -34.39832 -33.46686 -31.59163 -29.72355 -28.18320 -26.86224 -25.61989 -24.33668 -22.36986 -21.91463 -20.40866 -20.32276 -18.54151 -17.53406 -16.61451 -16.58128 -16.21997 -15.69160 -15.29707 -15.23825 -14.66803 -14.35494 -14.15289 -14.02365 -13.74271 -13.38114 -13.25888 -12.89318 -12.85450 -12.74788 -12.49076 -12.30814 -12.21690 -12.01815 -11.86391 -11.69110 -11.51518 -11.41576 -11.32693 -10.97568 -10.92563 -10.55630 -9.28099 -8.91737 -8.20452 -6.31425 1.39094 1.39737 1.53478 2.40727 2.85400 3.12454 3.24531 3.63461 3.72963 3.95108 4.08156 4.22834 4.27484 4.32853 4.37990 4.43495 4.46217 4.62007 4.64713 4.72662 4.74224 4.79272 4.86633 4.87706 4.99723 5.03789 5.06317 5.08483 5.16299 5.20447 5.23772 5.27173 5.27630 5.51506 5.54350 5.74630 5.85654 6.08139 6.17323 6.27914 6.35464 6.50411 6.85067 7.37723 8.91803 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.029805 B = 0.004820 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.215106 B = 5807.492954 C = 6296.588607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.553 5.553 3 C 0.070 3.930 4 C -0.095 4.095 5 C 0.058 3.942 6 H 0.083 0.917 7 C -0.138 4.138 8 C -0.130 4.130 9 C 0.054 3.946 10 H 0.049 0.951 11 C 0.087 3.913 12 N -0.490 5.490 13 C 0.060 3.940 14 C -0.082 4.082 15 C 0.027 3.973 16 C -0.541 4.541 17 H 0.056 0.944 18 C 0.000 4.000 19 N -0.934 5.934 20 Si 0.966 3.034 21 H -0.263 1.263 22 H -0.276 1.276 23 H -0.276 1.276 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.030 0.970 27 H 0.070 0.930 28 H 0.043 0.957 29 H 0.051 0.949 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.021 0.979 39 H 0.044 0.956 40 H 0.046 0.954 41 H -0.009 1.009 42 H -0.011 1.011 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.803 17.980 3.480 22.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.279 5.279 3 C -0.058 4.058 4 C -0.134 4.134 5 C -0.050 4.050 6 H 0.101 0.899 7 C -0.176 4.176 8 C -0.169 4.169 9 C -0.055 4.055 10 H 0.067 0.933 11 C -0.040 4.040 12 N -0.212 5.212 13 C -0.068 4.068 14 C -0.120 4.120 15 C -0.010 4.010 16 C -0.579 4.579 17 H 0.075 0.925 18 C -0.198 4.198 19 N -0.574 5.574 20 Si 0.790 3.210 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.202 1.202 24 H 0.091 0.909 25 H 0.080 0.920 26 H 0.048 0.952 27 H 0.089 0.911 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.040 0.960 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.009 0.991 42 H 0.008 0.992 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.854 17.491 2.616 21.864 hybrid contribution 0.709 -0.706 1.291 1.633 sum -12.145 16.786 3.907 21.084 Atomic orbital electron populations 1.22374 0.86502 1.01756 1.00926 1.61228 1.07309 1.14165 1.45185 1.21144 0.96754 0.88667 0.99255 1.20775 0.93387 0.99613 0.99600 1.22832 0.97995 0.87475 0.96704 0.89855 1.22870 1.00143 1.00379 0.94257 1.22228 1.00685 0.95967 0.98008 1.22073 0.95388 0.98602 0.89460 0.93313 1.22412 0.92457 0.97594 0.91532 1.65455 1.23527 1.05986 1.26234 1.22140 0.91578 0.93444 0.99673 1.21317 0.97655 0.93019 0.99984 1.18964 0.93415 0.94058 0.94594 1.21695 0.93331 0.92826 1.50057 0.92544 1.25985 0.94836 1.04282 0.94675 1.70107 1.01036 1.34718 1.51565 0.85390 0.78773 0.78927 0.77916 1.18737 1.20203 1.20160 0.90923 0.91997 0.95199 0.91136 0.93864 0.92980 0.89934 0.92222 0.88755 0.89646 0.91800 0.93357 0.92239 0.91822 0.96047 0.93749 0.93565 0.99102 0.99243 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 9.35 127.69 1.19 1.80 16 2 N -0.55 -13.27 4.52 -923.93 -4.17 -17.44 16 3 C 0.07 1.39 4.92 86.15 0.42 1.82 16 4 C -0.10 -2.00 4.82 29.22 0.14 -1.86 16 5 C 0.06 1.42 3.40 44.03 0.15 1.57 16 6 H 0.08 2.07 7.95 -1.92 -0.02 2.05 16 7 C -0.14 -2.81 5.96 31.40 0.19 -2.62 16 8 C -0.13 -2.86 5.70 30.47 0.17 -2.68 16 9 C 0.05 1.51 2.12 43.98 0.09 1.60 16 10 H 0.05 1.59 5.98 -2.13 -0.01 1.58 16 11 C 0.09 2.23 5.37 85.44 0.46 2.69 16 12 N -0.49 -15.28 4.35 -839.67 -3.65 -18.93 16 13 C 0.06 2.24 4.70 86.31 0.41 2.65 16 14 C -0.08 -3.67 5.17 30.59 0.16 -3.51 16 15 C 0.03 1.52 4.97 29.85 0.15 1.66 16 16 C -0.54 -32.21 9.11 25.60 0.23 -31.97 16 17 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 18 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 19 N -0.93 -58.27 13.29 21.45 0.28 -57.99 16 20 Si 0.97 45.52 29.54 68.60 2.03 47.55 16 21 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 24 H 0.07 1.24 8.12 -2.39 -0.02 1.22 16 25 H 0.06 1.20 8.09 -2.38 -0.02 1.18 16 26 H 0.03 0.48 8.13 -2.39 -0.02 0.46 16 27 H 0.07 1.18 7.61 -2.07 -0.02 1.16 16 28 H 0.04 0.80 4.98 -2.55 -0.01 0.79 16 29 H 0.05 1.30 8.16 -2.25 -0.02 1.28 16 30 H 0.08 1.30 8.14 -2.28 -0.02 1.28 16 31 H 0.06 1.26 8.18 -2.16 -0.02 1.25 16 32 H 0.09 1.48 7.79 -2.16 -0.02 1.46 16 33 H 0.09 1.56 6.49 -2.37 -0.02 1.55 16 34 H 0.06 1.43 8.18 -2.13 -0.02 1.42 16 35 H 0.05 1.04 7.87 -2.34 -0.02 1.02 16 36 H 0.06 1.71 8.15 -2.34 -0.02 1.70 16 37 H 0.06 2.41 8.01 -2.39 -0.02 2.39 16 38 H 0.02 0.80 8.09 -2.39 -0.02 0.79 16 39 H 0.04 1.96 6.59 -2.39 -0.02 1.95 16 40 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 41 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 42 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 43 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -66.69 321.04 -0.32 -67.01 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 0.96 Total: 8.20 kcal Atomic # 6 Polarization: -32.64 SS G_CDS: 4.23 Total: -28.41 kcal Atomic # 7 Polarization: -86.81 SS G_CDS: -7.54 Total: -94.35 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -66.69 -0.32 -67.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394363788.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.794 kcal (2) G-P(sol) polarization free energy of solvation -66.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds