Wall clock time and date at job start Mon Mar 30 2020 04:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46848 * 110.99376 * 2 1 4 4 C 1.53045 * 109.51641 * 185.83592 * 3 2 1 5 5 C 1.53117 * 109.27899 * 300.82034 * 4 3 2 6 6 C 1.53120 * 109.16087 * 57.65631 * 5 4 3 7 7 H 1.09002 * 109.50333 * 62.32803 * 6 5 4 8 8 C 1.52995 * 109.50253 * 182.40424 * 6 5 4 9 9 N 1.46903 * 109.47244 * 183.37326 * 8 6 5 10 10 C 1.46897 * 110.99853 * 76.19946 * 9 8 6 11 11 C 1.50701 * 109.47420 * 199.57222 * 10 9 8 12 12 H 1.08009 * 119.99566 * 356.30426 * 11 10 9 13 13 C 1.37873 * 120.00570 * 176.30160 * 11 10 9 14 14 N 1.31520 * 119.99594 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00242 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46963 * 60.00099 * 15 13 11 17 17 H 1.48500 * 109.47330 * 300.00215 * 15 13 11 18 18 H 1.48500 * 109.47308 * 180.02562 * 15 13 11 19 19 C 1.46896 * 111.00226 * 200.15456 * 9 8 6 20 20 C 1.52999 * 117.50081 * 133.64098 * 19 9 8 21 21 C 1.53002 * 117.49817 * 65.01553 * 19 9 8 22 22 C 1.46844 * 110.99717 * 124.20666 * 2 1 3 23 23 H 1.09003 * 109.46925 * 63.95652 * 1 2 3 24 24 H 1.08997 * 109.46998 * 183.95223 * 1 2 3 25 25 H 1.08997 * 109.47335 * 303.95397 * 1 2 3 26 26 H 1.09001 * 109.46711 * 65.82482 * 3 2 1 27 27 H 1.08997 * 109.46593 * 305.84972 * 3 2 1 28 28 H 1.08996 * 109.49957 * 180.87887 * 4 3 2 29 29 H 1.09000 * 109.53260 * 60.78101 * 4 3 2 30 30 H 1.08999 * 109.52456 * 297.75212 * 5 4 3 31 31 H 1.09001 * 109.57272 * 177.59146 * 5 4 3 32 32 H 1.09000 * 109.47525 * 63.37515 * 8 6 5 33 33 H 1.09001 * 109.47032 * 303.37153 * 8 6 5 34 34 H 1.09001 * 109.47442 * 79.57423 * 10 9 8 35 35 H 1.09003 * 109.47618 * 319.57175 * 10 9 8 36 36 H 0.96999 * 119.99991 * 0.02562 * 14 13 11 37 37 H 1.09004 * 115.55017 * 279.34604 * 19 9 8 38 38 H 1.09000 * 117.49627 * 0.02562 * 20 19 9 39 39 H 1.08995 * 117.50177 * 145.02000 * 20 19 9 40 40 H 1.09005 * 117.49627 * 214.97714 * 21 19 9 41 41 H 1.08992 * 117.49876 * 359.97438 * 21 19 9 42 42 H 1.09000 * 109.46153 * 54.14264 * 22 2 1 43 43 H 1.09004 * 109.46277 * 294.18079 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3342 -0.1467 5 6 4.1188 0.5371 1.0145 6 6 3.5181 -0.8714 1.0210 7 1 3.7820 -1.3838 0.0958 8 6 4.0680 -1.6557 2.2140 9 7 3.5544 -3.0315 2.1742 10 6 4.2565 -3.8262 1.1577 11 6 3.4268 -5.0330 0.8022 12 1 2.5019 -5.2256 1.3257 13 6 3.8483 -5.8912 -0.1912 14 7 4.9748 -5.6568 -0.8283 15 14 2.8195 -7.3866 -0.6322 16 1 1.4753 -6.9466 -1.0848 17 1 2.6789 -8.2600 0.5605 18 1 3.4866 -8.1423 -1.7227 19 6 3.6473 -3.6665 3.4956 20 6 2.4200 -4.4270 4.0018 21 6 2.7951 -3.0799 4.6228 22 6 1.9952 -0.7707 1.1338 23 1 -0.3633 0.4512 -0.9233 24 1 -0.3633 -1.0252 0.0708 25 1 -0.3634 0.5740 0.8524 26 1 1.7324 1.8609 0.9376 27 1 1.5634 1.9257 -0.8330 28 1 3.9098 2.3512 -0.1310 29 1 3.7819 0.8571 -1.0905 30 1 3.8886 1.0355 1.9561 31 1 5.1998 0.4715 0.8918 32 1 3.7519 -1.1766 3.1406 33 1 5.1568 -1.6728 2.1668 34 1 5.2197 -4.1508 1.5515 35 1 4.4144 -3.2187 0.2666 36 1 5.5092 -4.8805 -0.5990 37 1 4.6285 -4.0611 3.7596 38 1 1.5438 -4.4565 3.3541 39 1 2.5936 -5.3222 4.5989 40 1 3.2154 -3.0889 5.6285 41 1 2.1659 -2.2225 4.3840 42 1 1.5633 -1.7714 1.1243 43 1 1.7324 -0.2707 2.0660 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686011026.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:18 Heat of formation + Delta-G solvation = 20.583800 kcal Electronic energy + Delta-G solvation = -19767.582981 eV Core-core repulsion = 17040.861257 eV Total energy + Delta-G solvation = -2726.721724 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.08671 -37.51207 -34.47341 -33.35037 -32.30838 -30.44632 -26.75780 -26.49424 -24.45875 -22.63514 -22.43876 -21.82626 -21.03730 -19.52405 -19.23830 -16.93272 -15.59780 -15.24985 -14.96371 -14.66330 -14.35789 -14.31900 -13.83076 -13.62567 -13.03464 -12.75238 -12.62388 -12.27461 -11.98431 -11.77895 -11.62815 -11.31116 -11.21263 -11.01325 -10.85724 -10.69627 -10.64080 -10.24568 -10.07696 -10.02887 -9.98262 -9.66464 -9.36209 -8.60623 -8.27037 -8.07924 -7.30273 -6.26321 -3.93659 3.49326 3.52061 3.70133 4.15225 4.39678 4.52511 4.66999 5.01115 5.05402 5.18829 5.30843 5.47050 5.49056 5.50583 5.55546 5.57426 5.65122 5.68406 5.81241 5.87559 5.89968 5.95699 6.01017 6.01799 6.08480 6.15612 6.19687 6.28226 6.29656 6.36090 6.51777 6.68378 6.72746 6.83425 7.03387 7.12688 7.33181 7.37195 7.88507 8.11113 8.38891 8.70110 8.97563 9.75642 11.12423 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016909 B = 0.006981 C = 0.006112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.494815 B = 4009.958946 C = 4579.771929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.544 5.544 3 C 0.057 3.943 4 C -0.115 4.115 5 C -0.116 4.116 6 C -0.077 4.077 7 H 0.084 0.916 8 C 0.063 3.937 9 N -0.501 5.501 10 C 0.187 3.813 11 C -0.575 4.575 12 H 0.057 0.943 13 C 0.012 3.988 14 N -0.918 5.918 15 Si 1.070 2.930 16 H -0.288 1.288 17 H -0.290 1.290 18 H -0.284 1.284 19 C 0.035 3.965 20 C -0.152 4.152 21 C -0.191 4.191 22 C 0.076 3.924 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.018 0.982 26 H 0.026 0.974 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.025 0.975 34 H -0.022 1.022 35 H 0.024 0.976 36 H 0.265 0.735 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.152 12.444 5.979 14.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.268 5.268 3 C -0.071 4.071 4 C -0.153 4.153 5 C -0.154 4.154 6 C -0.096 4.096 7 H 0.102 0.898 8 C -0.066 4.066 9 N -0.225 5.225 10 C 0.061 3.939 11 C -0.614 4.614 12 H 0.075 0.925 13 C -0.191 4.191 14 N -0.556 5.556 15 Si 0.898 3.102 16 H -0.215 1.215 17 H -0.216 1.216 18 H -0.210 1.210 19 C -0.075 4.075 20 C -0.190 4.190 21 C -0.228 4.228 22 C -0.051 4.051 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.037 0.963 26 H 0.044 0.956 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.043 0.957 34 H -0.005 1.005 35 H 0.042 0.958 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -5.562 10.911 4.404 13.015 hybrid contribution 0.692 1.694 2.000 2.710 sum -4.870 12.605 6.403 14.954 Atomic orbital electron populations 1.22308 0.87691 1.02046 0.99926 1.61876 1.07194 1.12978 1.44765 1.22059 0.95722 0.89696 0.99612 1.21555 0.94464 0.99556 0.99723 1.21617 0.99872 0.95962 0.97928 1.21141 0.94411 0.94196 0.99844 0.89788 1.22018 0.96453 0.90806 0.97330 1.61856 1.56770 1.00420 1.03437 1.19868 0.91943 0.92948 0.89106 1.21944 1.09020 1.08730 1.21687 0.92459 1.25775 0.97709 1.01964 0.93666 1.70797 1.13313 1.29535 1.41912 0.83529 0.75113 0.75366 0.76154 1.21464 1.21636 1.20993 1.22143 0.94115 1.01891 0.89313 1.22848 1.00338 0.93565 1.02219 1.23008 1.04970 0.98245 0.96625 1.22013 0.95236 0.98613 0.89265 0.91847 0.91143 0.96314 0.95569 0.91375 0.92005 0.91014 0.92745 0.92066 0.92231 0.95659 1.00479 0.95806 0.92480 0.90914 0.88392 0.89737 0.89847 0.89205 0.88878 0.96233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.62 60.07 0.58 0.95 16 2 N -0.54 -8.37 4.91 -242.95 -1.19 -9.56 16 3 C 0.06 0.74 5.46 -3.83 -0.02 0.72 16 4 C -0.12 -1.46 6.09 -26.65 -0.16 -1.63 16 5 C -0.12 -1.60 5.29 -26.61 -0.14 -1.74 16 6 C -0.08 -1.31 2.39 -90.54 -0.22 -1.52 16 7 H 0.08 1.72 6.72 -51.93 -0.35 1.37 16 8 C 0.06 1.13 4.34 -3.82 -0.02 1.11 16 9 N -0.50 -10.59 3.89 -228.08 -0.89 -11.47 16 10 C 0.19 4.80 3.90 -4.98 -0.02 4.79 16 11 C -0.57 -16.29 9.00 -34.44 -0.31 -16.60 16 12 H 0.06 1.62 7.26 -52.48 -0.38 1.24 16 13 C 0.01 0.34 5.46 -17.82 -0.10 0.24 16 14 N -0.92 -28.31 13.65 55.43 0.76 -27.56 16 15 Si 1.07 25.82 29.90 -169.99 -5.08 20.74 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 C 0.03 0.67 4.73 -67.71 -0.32 0.35 16 20 C -0.15 -2.71 10.00 -26.73 -0.27 -2.98 16 21 C -0.19 -2.98 9.60 -26.73 -0.26 -3.24 16 22 C 0.08 1.27 4.61 -3.84 -0.02 1.25 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.07 0.96 8.02 -51.93 -0.42 0.54 16 25 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.97 7.04 -51.93 -0.37 0.61 16 33 H 0.03 0.47 7.99 -51.93 -0.42 0.05 16 34 H -0.02 -0.62 7.88 -51.93 -0.41 -1.03 16 35 H 0.02 0.65 6.22 -51.93 -0.32 0.33 16 36 H 0.27 8.16 7.21 -40.82 -0.29 7.86 16 37 H 0.07 1.48 8.01 -51.93 -0.42 1.06 16 38 H 0.10 1.87 8.05 -51.93 -0.42 1.45 16 39 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 40 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.09 1.38 7.92 -51.93 -0.41 0.97 16 42 H 0.09 1.81 7.63 -51.93 -0.40 1.41 16 43 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 333.63 15.07 5.03 5.03 Total: -1.00 -30.18 333.63 -10.69 -40.87 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -8.04 Total: 0.26 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: -1.27 Total: -18.30 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: -1.32 Total: -48.59 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -5.08 Total: 20.74 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.18 -10.69 -40.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686011026.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.450 kcal (2) G-P(sol) polarization free energy of solvation -30.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds