Wall clock time and date at job start Mon Mar 30 2020 04:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46848 * 110.99376 * 2 1 4 4 C 1.53045 * 109.51641 * 185.83592 * 3 2 1 5 5 C 1.53117 * 109.27899 * 300.82034 * 4 3 2 6 6 C 1.53120 * 109.16087 * 57.65631 * 5 4 3 7 7 H 1.09002 * 109.50333 * 62.32803 * 6 5 4 8 8 C 1.52995 * 109.50253 * 182.40424 * 6 5 4 9 9 N 1.46903 * 109.47244 * 183.37326 * 8 6 5 10 10 C 1.46897 * 110.99853 * 76.19946 * 9 8 6 11 11 C 1.50701 * 109.47420 * 199.57222 * 10 9 8 12 12 H 1.08009 * 119.99566 * 356.30426 * 11 10 9 13 13 C 1.37873 * 120.00570 * 176.30160 * 11 10 9 14 14 N 1.31520 * 119.99594 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00242 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46963 * 60.00099 * 15 13 11 17 17 H 1.48500 * 109.47330 * 300.00215 * 15 13 11 18 18 H 1.48500 * 109.47308 * 180.02562 * 15 13 11 19 19 C 1.46896 * 111.00226 * 200.15456 * 9 8 6 20 20 C 1.52999 * 117.50081 * 133.64098 * 19 9 8 21 21 C 1.53002 * 117.49817 * 65.01553 * 19 9 8 22 22 C 1.46844 * 110.99717 * 124.20666 * 2 1 3 23 23 H 1.09003 * 109.46925 * 63.95652 * 1 2 3 24 24 H 1.08997 * 109.46998 * 183.95223 * 1 2 3 25 25 H 1.08997 * 109.47335 * 303.95397 * 1 2 3 26 26 H 1.09001 * 109.46711 * 65.82482 * 3 2 1 27 27 H 1.08997 * 109.46593 * 305.84972 * 3 2 1 28 28 H 1.08996 * 109.49957 * 180.87887 * 4 3 2 29 29 H 1.09000 * 109.53260 * 60.78101 * 4 3 2 30 30 H 1.08999 * 109.52456 * 297.75212 * 5 4 3 31 31 H 1.09001 * 109.57272 * 177.59146 * 5 4 3 32 32 H 1.09000 * 109.47525 * 63.37515 * 8 6 5 33 33 H 1.09001 * 109.47032 * 303.37153 * 8 6 5 34 34 H 1.09001 * 109.47442 * 79.57423 * 10 9 8 35 35 H 1.09003 * 109.47618 * 319.57175 * 10 9 8 36 36 H 0.96999 * 119.99991 * 0.02562 * 14 13 11 37 37 H 1.09004 * 115.55017 * 279.34604 * 19 9 8 38 38 H 1.09000 * 117.49627 * 0.02562 * 20 19 9 39 39 H 1.08995 * 117.50177 * 145.02000 * 20 19 9 40 40 H 1.09005 * 117.49627 * 214.97714 * 21 19 9 41 41 H 1.08992 * 117.49876 * 359.97438 * 21 19 9 42 42 H 1.09000 * 109.46153 * 54.14264 * 22 2 1 43 43 H 1.09004 * 109.46277 * 294.18079 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3342 -0.1467 5 6 4.1188 0.5371 1.0145 6 6 3.5181 -0.8714 1.0210 7 1 3.7820 -1.3838 0.0958 8 6 4.0680 -1.6557 2.2140 9 7 3.5544 -3.0315 2.1742 10 6 4.2565 -3.8262 1.1577 11 6 3.4268 -5.0330 0.8022 12 1 2.5019 -5.2256 1.3257 13 6 3.8483 -5.8912 -0.1912 14 7 4.9748 -5.6568 -0.8283 15 14 2.8195 -7.3866 -0.6322 16 1 1.4753 -6.9466 -1.0848 17 1 2.6789 -8.2600 0.5605 18 1 3.4866 -8.1423 -1.7227 19 6 3.6473 -3.6665 3.4956 20 6 2.4200 -4.4270 4.0018 21 6 2.7951 -3.0799 4.6228 22 6 1.9952 -0.7707 1.1338 23 1 -0.3633 0.4512 -0.9233 24 1 -0.3633 -1.0252 0.0708 25 1 -0.3634 0.5740 0.8524 26 1 1.7324 1.8609 0.9376 27 1 1.5634 1.9257 -0.8330 28 1 3.9098 2.3512 -0.1310 29 1 3.7819 0.8571 -1.0905 30 1 3.8886 1.0355 1.9561 31 1 5.1998 0.4715 0.8918 32 1 3.7519 -1.1766 3.1406 33 1 5.1568 -1.6728 2.1668 34 1 5.2197 -4.1508 1.5515 35 1 4.4144 -3.2187 0.2666 36 1 5.5092 -4.8805 -0.5990 37 1 4.6285 -4.0611 3.7596 38 1 1.5438 -4.4565 3.3541 39 1 2.5936 -5.3222 4.5989 40 1 3.2154 -3.0889 5.6285 41 1 2.1659 -2.2225 4.3840 42 1 1.5633 -1.7714 1.1243 43 1 1.7324 -0.2707 2.0660 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686011026.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:18 Heat of formation + Delta-G solvation = 1.509185 kcal Electronic energy + Delta-G solvation = -19768.410118 eV Core-core repulsion = 17040.861257 eV Total energy + Delta-G solvation = -2727.548861 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.39601 -38.96949 -35.98926 -35.14161 -33.82777 -31.87940 -28.60924 -27.66158 -26.02097 -24.52793 -23.75888 -23.18538 -22.33355 -21.03994 -20.57381 -19.01928 -16.96797 -16.68871 -16.30471 -16.20778 -15.75958 -15.61519 -15.48314 -15.19591 -14.41996 -14.34870 -13.81102 -13.74573 -13.42361 -13.23028 -13.07895 -13.07026 -12.66985 -12.53757 -12.37611 -12.31362 -11.94668 -11.85135 -11.52508 -11.45919 -11.23582 -11.17115 -10.87526 -10.69600 -10.50917 -9.20751 -9.07334 -8.61163 -6.30330 1.52066 1.61287 1.80039 2.57582 2.96989 3.01931 3.03713 3.21356 3.86253 3.89374 3.95248 4.07241 4.11989 4.19873 4.34448 4.36176 4.47694 4.51078 4.55117 4.58151 4.66622 4.73759 4.77215 4.78855 4.83171 4.88670 4.92310 4.99331 4.99865 5.03843 5.08225 5.16883 5.20457 5.35716 5.38775 5.48877 5.88004 6.08247 6.17875 6.25949 6.47741 6.49119 6.69274 7.48732 8.76403 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016909 B = 0.006981 C = 0.006112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.494815 B = 4009.958946 C = 4579.771929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.569 5.569 3 C 0.058 3.942 4 C -0.113 4.113 5 C -0.110 4.110 6 C -0.073 4.073 7 H 0.037 0.963 8 C 0.065 3.935 9 N -0.502 5.502 10 C 0.203 3.797 11 C -0.581 4.581 12 H 0.055 0.945 13 C -0.042 4.042 14 N -0.943 5.943 15 Si 1.117 2.883 16 H -0.272 1.272 17 H -0.269 1.269 18 H -0.285 1.285 19 C -0.004 4.004 20 C -0.159 4.159 21 C -0.145 4.145 22 C 0.089 3.911 23 H 0.078 0.922 24 H 0.056 0.944 25 H 0.034 0.966 26 H 0.040 0.960 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.015 0.985 34 H -0.052 1.052 35 H -0.001 1.001 36 H 0.250 0.750 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.116 0.884 41 H 0.099 0.901 42 H 0.056 0.944 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.732 13.949 7.537 17.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.294 5.294 3 C -0.070 4.070 4 C -0.151 4.151 5 C -0.148 4.148 6 C -0.092 4.092 7 H 0.055 0.945 8 C -0.063 4.063 9 N -0.225 5.225 10 C 0.077 3.923 11 C -0.619 4.619 12 H 0.074 0.926 13 C -0.238 4.238 14 N -0.582 5.582 15 Si 0.939 3.061 16 H -0.197 1.197 17 H -0.194 1.194 18 H -0.211 1.211 19 C -0.113 4.113 20 C -0.197 4.197 21 C -0.182 4.182 22 C -0.039 4.039 23 H 0.097 0.903 24 H 0.075 0.925 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.033 0.967 34 H -0.034 1.034 35 H 0.017 0.983 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.116 0.884 40 H 0.134 0.866 41 H 0.117 0.883 42 H 0.075 0.925 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.151 12.448 5.987 15.554 hybrid contribution 1.190 1.276 1.544 2.330 sum -5.961 13.724 7.531 16.751 Atomic orbital electron populations 1.22321 0.86394 1.01668 1.01417 1.61842 1.08628 1.14651 1.44318 1.22139 0.95520 0.88335 1.00998 1.21572 0.94708 1.00754 0.98073 1.21582 0.99732 0.93864 0.99603 1.21064 0.95347 0.95754 0.97078 0.94472 1.22114 0.95875 0.89329 0.99013 1.61772 1.55833 1.01295 1.03635 1.19482 0.90678 0.92562 0.89585 1.22248 1.08903 1.09425 1.21325 0.92637 1.27324 0.97970 1.04877 0.93628 1.70929 1.14533 1.29507 1.43182 0.82933 0.74175 0.72360 0.76663 1.19727 1.19405 1.21069 1.22233 0.94404 1.04845 0.89841 1.22886 0.98612 0.95697 1.02528 1.23073 1.01884 0.96894 0.96325 1.21740 0.94340 0.97255 0.90594 0.90301 0.92540 0.94742 0.94142 0.89755 0.88926 0.93023 0.90620 0.92065 0.89501 0.96700 1.03417 0.98334 0.94063 0.92377 0.90019 0.88371 0.86630 0.88257 0.92519 0.94721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 9.62 127.69 1.23 1.97 16 2 N -0.57 -17.00 4.91 -922.56 -4.53 -21.53 16 3 C 0.06 1.34 5.46 86.33 0.47 1.81 16 4 C -0.11 -2.67 6.09 30.65 0.19 -2.48 16 5 C -0.11 -2.89 5.29 30.67 0.16 -2.73 16 6 C -0.07 -2.53 2.39 -10.74 -0.03 -2.56 16 7 H 0.04 1.63 6.72 -2.39 -0.02 1.61 16 8 C 0.06 2.35 4.34 86.30 0.37 2.73 16 9 N -0.50 -21.84 3.89 -875.53 -3.40 -25.25 16 10 C 0.20 11.10 3.90 85.56 0.33 11.44 16 11 C -0.58 -34.06 9.00 25.60 0.23 -33.83 16 12 H 0.06 3.22 7.26 -2.91 -0.02 3.20 16 13 C -0.04 -2.48 5.46 84.65 0.46 -2.02 16 14 N -0.94 -60.36 13.65 21.45 0.29 -60.07 16 15 Si 1.12 52.32 29.90 68.60 2.05 54.37 16 16 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 17 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 18 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 19 C 0.00 -0.16 4.73 44.92 0.21 0.05 16 20 C -0.16 -5.51 10.00 30.60 0.31 -5.20 16 21 C -0.14 -4.10 9.60 30.60 0.29 -3.81 16 22 C 0.09 2.92 4.61 86.33 0.40 3.32 16 23 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.06 1.53 8.02 -2.39 -0.02 1.51 16 25 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.08 1.70 8.12 -2.39 -0.02 1.68 16 28 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.09 2.66 7.04 -2.39 -0.02 2.64 16 33 H 0.01 0.56 7.99 -2.39 -0.02 0.54 16 34 H -0.05 -3.06 7.88 -2.39 -0.02 -3.08 16 35 H 0.00 -0.08 6.22 -2.39 -0.01 -0.09 16 36 H 0.25 16.32 7.21 -92.71 -0.67 15.66 16 37 H 0.06 2.41 8.01 -2.38 -0.02 2.40 16 38 H 0.08 3.09 8.05 -2.39 -0.02 3.07 16 39 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 40 H 0.12 2.61 8.14 -2.38 -0.02 2.59 16 41 H 0.10 2.68 7.92 -2.39 -0.02 2.66 16 42 H 0.06 2.26 7.63 -2.39 -0.02 2.24 16 43 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -68.46 333.63 0.08 -68.38 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 1.04 Total: 15.41 kcal Atomic # 6 Polarization: -35.95 SS G_CDS: 4.63 Total: -31.32 kcal Atomic # 7 Polarization: -99.20 SS G_CDS: -7.64 Total: -106.85 kcal Atomic # 14 Polarization: 52.32 SS G_CDS: 2.05 Total: 54.37 kcal Total: -68.46 0.08 -68.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686011026.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.888 kcal (2) G-P(sol) polarization free energy of solvation -68.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds