Wall clock time and date at job start Mon Mar 30 2020 04:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46842 * 111.00302 * 2 1 4 4 C 1.53032 * 109.52803 * 174.16091 * 3 2 1 5 5 C 1.53125 * 109.27738 * 59.17615 * 4 3 2 6 6 C 1.53114 * 109.16314 * 302.34756 * 5 4 3 7 7 H 1.08999 * 109.53646 * 297.69866 * 6 5 4 8 8 C 1.52995 * 109.50817 * 177.59415 * 6 5 4 9 9 N 1.46899 * 109.47376 * 175.19830 * 8 6 5 10 10 C 1.46901 * 110.99830 * 170.00311 * 9 8 6 11 11 C 1.50701 * 109.46887 * 199.75381 * 10 9 8 12 12 H 1.08001 * 120.00166 * 356.81852 * 11 10 9 13 13 C 1.37881 * 119.99721 * 176.81491 * 11 10 9 14 14 N 1.31511 * 120.00238 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99523 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47368 * 269.99742 * 15 13 11 17 17 H 1.48499 * 109.47301 * 30.00432 * 15 13 11 18 18 H 1.48503 * 109.46705 * 149.99882 * 15 13 11 19 19 C 1.46904 * 110.99947 * 293.95353 * 9 8 6 20 20 C 1.52999 * 117.49896 * 143.07086 * 19 9 8 21 21 C 1.52997 * 117.49597 * 74.44876 * 19 9 8 22 22 C 1.46851 * 111.00082 * 235.78791 * 2 1 3 23 23 H 1.09004 * 109.47560 * 184.21392 * 1 2 3 24 24 H 1.09001 * 109.47512 * 304.21340 * 1 2 3 25 25 H 1.09002 * 109.47129 * 64.20884 * 1 2 3 26 26 H 1.09005 * 109.46036 * 294.17659 * 3 2 1 27 27 H 1.09001 * 109.46484 * 54.15146 * 3 2 1 28 28 H 1.09002 * 109.50922 * 179.11392 * 4 3 2 29 29 H 1.09003 * 109.50255 * 299.20091 * 4 3 2 30 30 H 1.09000 * 109.52031 * 182.44397 * 5 4 3 31 31 H 1.09004 * 109.52179 * 62.25609 * 5 4 3 32 32 H 1.09006 * 109.46838 * 55.19761 * 8 6 5 33 33 H 1.09003 * 109.47274 * 295.20039 * 8 6 5 34 34 H 1.08997 * 109.47266 * 79.75489 * 10 9 8 35 35 H 1.09007 * 109.47212 * 319.75228 * 10 9 8 36 36 H 0.96995 * 119.99864 * 0.02562 * 14 13 11 37 37 H 1.09003 * 115.54678 * 288.77887 * 19 9 8 38 38 H 1.09007 * 117.49402 * 0.02562 * 20 19 9 39 39 H 1.08999 * 117.49950 * 145.01554 * 20 19 9 40 40 H 1.08998 * 117.49775 * 214.97593 * 21 19 9 41 41 H 1.08998 * 117.50273 * 0.02562 * 21 19 9 42 42 H 1.08998 * 109.46195 * 65.82475 * 22 2 1 43 43 H 1.09002 * 109.46176 * 305.85902 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3341 0.1467 5 6 4.1187 0.5368 -1.0144 6 6 3.5181 -0.8716 -1.0209 7 1 3.7812 -1.3843 -0.0957 8 6 4.0679 -1.6560 -2.2138 9 7 3.5818 -3.0410 -2.1552 10 6 3.8897 -3.7600 -3.3986 11 6 2.9928 -4.9653 -3.5171 12 1 2.3025 -5.2051 -2.7219 13 6 3.0535 -5.7619 -4.6409 14 7 3.8936 -5.4696 -5.6096 15 14 1.9423 -7.2563 -4.7874 16 1 2.6286 -8.4416 -4.2139 17 1 0.6794 -7.0087 -4.0464 18 1 1.6354 -7.5064 -6.2187 19 6 4.1347 -3.7441 -0.9898 20 6 3.2227 -4.7361 -0.2651 21 6 3.5614 -3.3929 0.3845 22 6 1.9952 -0.7708 -1.1337 23 1 -0.3634 -1.0249 0.0755 24 1 -0.3634 0.5778 0.8498 25 1 -0.3633 0.4471 -0.9253 26 1 1.7324 1.8608 -0.9376 27 1 1.5635 1.9257 0.8330 28 1 3.9099 2.3512 0.1309 29 1 3.7813 0.8573 1.0909 30 1 5.1997 0.4713 -0.8905 31 1 3.8887 1.0353 -1.9561 32 1 5.1575 -1.6516 -2.1805 33 1 3.7309 -1.1916 -3.1405 34 1 4.9309 -4.0820 -3.3839 35 1 3.7255 -3.0998 -4.2504 36 1 4.4708 -4.6938 -5.5333 37 1 5.1964 -3.9843 -1.0459 38 1 2.2126 -4.8673 -0.6534 39 1 3.6844 -5.6294 0.1556 40 1 4.2458 -3.4025 1.2327 41 1 2.7737 -2.6405 0.4240 42 1 1.7324 -0.2709 -2.0660 43 1 1.5633 -1.7716 -1.1242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686011027.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:21 Heat of formation + Delta-G solvation = 26.130022 kcal Electronic energy + Delta-G solvation = -19820.410330 eV Core-core repulsion = 17093.929109 eV Total energy + Delta-G solvation = -2726.481221 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.34224 -37.45584 -34.16358 -33.56585 -32.34915 -30.76464 -26.77044 -26.52854 -24.39030 -22.75535 -22.32733 -21.86873 -21.32046 -19.52113 -19.32618 -16.84404 -15.69775 -15.32018 -14.88093 -14.54864 -14.43510 -14.34545 -13.98981 -13.68079 -13.14338 -12.88358 -12.46462 -12.40406 -12.02880 -11.80168 -11.68105 -11.50215 -11.22524 -10.95917 -10.91477 -10.64299 -10.62413 -10.29999 -10.19371 -10.09748 -10.02586 -9.41210 -9.23110 -8.63515 -8.30445 -8.22243 -7.31224 -6.29379 -3.97099 3.46899 3.50908 3.66546 4.03610 4.49542 4.51490 4.67453 4.90631 4.97031 5.10059 5.21768 5.41140 5.45475 5.48762 5.53994 5.59846 5.60833 5.67153 5.75098 5.82285 5.89734 5.91331 5.93693 6.01522 6.09167 6.16184 6.17737 6.22873 6.28785 6.36148 6.52496 6.67379 6.72889 6.85705 6.97543 7.12288 7.20428 7.23118 7.86464 8.09774 8.36782 8.68544 8.94528 9.72512 11.09116 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.026284 B = 0.005613 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.043854 B = 4986.921323 C = 5086.880802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.545 5.545 3 C 0.055 3.945 4 C -0.113 4.113 5 C -0.118 4.118 6 C -0.091 4.091 7 H 0.096 0.904 8 C 0.063 3.937 9 N -0.501 5.501 10 C 0.186 3.814 11 C -0.575 4.575 12 H 0.060 0.940 13 C 0.011 3.989 14 N -0.920 5.920 15 Si 1.073 2.927 16 H -0.289 1.289 17 H -0.288 1.288 18 H -0.286 1.286 19 C 0.031 3.969 20 C -0.151 4.151 21 C -0.192 4.192 22 C 0.070 3.930 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.021 0.979 26 H 0.028 0.972 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.023 0.977 33 H 0.064 0.936 34 H -0.020 1.020 35 H 0.018 0.982 36 H 0.265 0.735 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.109 0.891 42 H 0.026 0.974 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.271 11.878 12.101 17.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.269 5.269 3 C -0.073 4.073 4 C -0.151 4.151 5 C -0.156 4.156 6 C -0.110 4.110 7 H 0.114 0.886 8 C -0.066 4.066 9 N -0.225 5.225 10 C 0.061 3.939 11 C -0.614 4.614 12 H 0.078 0.922 13 C -0.192 4.192 14 N -0.557 5.557 15 Si 0.902 3.098 16 H -0.216 1.216 17 H -0.214 1.214 18 H -0.212 1.212 19 C -0.079 4.079 20 C -0.189 4.189 21 C -0.229 4.229 22 C -0.057 4.057 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.040 0.960 26 H 0.046 0.954 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.041 0.959 33 H 0.082 0.918 34 H -0.003 1.003 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.118 0.882 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.127 0.873 42 H 0.044 0.956 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.041 10.396 11.566 15.846 hybrid contribution 1.111 1.674 -0.006 2.009 sum -1.931 12.070 11.560 16.824 Atomic orbital electron populations 1.22316 0.87667 1.02329 0.99847 1.61942 1.07247 1.13143 1.44593 1.22069 0.95690 0.89705 0.99816 1.21545 0.94471 0.99648 0.99465 1.21637 0.99759 0.96077 0.98103 1.21492 0.94370 0.94614 1.00506 0.88626 1.22050 0.96369 0.90609 0.97539 1.61852 1.57420 0.99959 1.03286 1.19822 0.94655 0.93864 0.85588 1.22016 1.22869 1.10270 1.06239 0.92172 1.25806 0.98792 1.02083 0.92529 1.70766 1.22486 1.28582 1.33891 0.83482 0.75371 0.75074 0.75896 1.21633 1.21446 1.21203 1.22061 0.94616 1.01894 0.89296 1.22840 1.01642 0.92046 1.02362 1.23273 1.04287 1.00351 0.95021 1.22070 0.95179 0.98633 0.89833 0.91185 0.91895 0.95992 0.95358 0.91359 0.92000 0.91238 0.92114 0.92591 0.95913 0.91788 1.00256 0.96446 0.92469 0.91425 0.88240 0.89970 0.90089 0.87307 0.95571 0.89092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.59 60.06 0.58 0.89 16 2 N -0.54 -7.23 4.91 -242.96 -1.19 -8.42 16 3 C 0.06 0.64 5.46 -3.84 -0.02 0.61 16 4 C -0.11 -1.25 6.09 -26.65 -0.16 -1.41 16 5 C -0.12 -1.48 5.29 -26.61 -0.14 -1.63 16 6 C -0.09 -1.36 1.86 -90.54 -0.17 -1.53 16 7 H 0.10 1.48 4.53 -51.93 -0.24 1.25 16 8 C 0.06 1.14 4.33 -3.83 -0.02 1.13 16 9 N -0.50 -10.67 4.03 -228.08 -0.92 -11.59 16 10 C 0.19 4.82 4.09 -4.97 -0.02 4.80 16 11 C -0.58 -16.25 8.83 -34.44 -0.30 -16.55 16 12 H 0.06 1.69 6.31 -52.49 -0.33 1.36 16 13 C 0.01 0.31 5.46 -17.82 -0.10 0.21 16 14 N -0.92 -28.30 13.65 55.43 0.76 -27.54 16 15 Si 1.07 25.69 29.90 -169.99 -5.08 20.60 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 C 0.03 0.60 4.56 -67.71 -0.31 0.29 16 20 C -0.15 -2.79 9.67 -26.73 -0.26 -3.05 16 21 C -0.19 -3.10 8.21 -26.73 -0.22 -3.32 16 22 C 0.07 1.08 3.98 -3.83 -0.02 1.06 16 23 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 25 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 33 H 0.06 1.19 7.83 -51.93 -0.41 0.79 16 34 H -0.02 -0.56 7.95 -51.93 -0.41 -0.97 16 35 H 0.02 0.48 7.48 -51.92 -0.39 0.09 16 36 H 0.27 8.14 7.21 -40.82 -0.29 7.85 16 37 H 0.07 1.37 8.13 -51.93 -0.42 0.95 16 38 H 0.10 1.99 7.26 -51.93 -0.38 1.62 16 39 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 40 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.11 1.78 5.33 -51.93 -0.28 1.50 16 42 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.09 1.61 7.22 -51.93 -0.37 1.23 16 LS Contribution 326.21 15.07 4.92 4.92 Total: -1.00 -29.87 326.21 -10.48 -40.36 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -7.80 Total: 0.18 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -1.16 Total: -18.50 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: -1.36 Total: -47.56 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -5.08 Total: 20.60 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.87 -10.48 -40.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686011027.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.487 kcal (2) G-P(sol) polarization free energy of solvation -29.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds