Wall clock time and date at job start Mon Mar 30 2020 04:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46842 * 111.00302 * 2 1 4 4 C 1.53032 * 109.52803 * 174.16091 * 3 2 1 5 5 C 1.53125 * 109.27738 * 59.17615 * 4 3 2 6 6 C 1.53114 * 109.16314 * 302.34756 * 5 4 3 7 7 H 1.08999 * 109.53646 * 297.69866 * 6 5 4 8 8 C 1.52995 * 109.50817 * 177.59415 * 6 5 4 9 9 N 1.46899 * 109.47376 * 175.19830 * 8 6 5 10 10 C 1.46901 * 110.99830 * 170.00311 * 9 8 6 11 11 C 1.50701 * 109.46887 * 199.75381 * 10 9 8 12 12 H 1.08001 * 120.00166 * 356.81852 * 11 10 9 13 13 C 1.37881 * 119.99721 * 176.81491 * 11 10 9 14 14 N 1.31511 * 120.00238 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99523 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47368 * 269.99742 * 15 13 11 17 17 H 1.48499 * 109.47301 * 30.00432 * 15 13 11 18 18 H 1.48503 * 109.46705 * 149.99882 * 15 13 11 19 19 C 1.46904 * 110.99947 * 293.95353 * 9 8 6 20 20 C 1.52999 * 117.49896 * 143.07086 * 19 9 8 21 21 C 1.52997 * 117.49597 * 74.44876 * 19 9 8 22 22 C 1.46851 * 111.00082 * 235.78791 * 2 1 3 23 23 H 1.09004 * 109.47560 * 184.21392 * 1 2 3 24 24 H 1.09001 * 109.47512 * 304.21340 * 1 2 3 25 25 H 1.09002 * 109.47129 * 64.20884 * 1 2 3 26 26 H 1.09005 * 109.46036 * 294.17659 * 3 2 1 27 27 H 1.09001 * 109.46484 * 54.15146 * 3 2 1 28 28 H 1.09002 * 109.50922 * 179.11392 * 4 3 2 29 29 H 1.09003 * 109.50255 * 299.20091 * 4 3 2 30 30 H 1.09000 * 109.52031 * 182.44397 * 5 4 3 31 31 H 1.09004 * 109.52179 * 62.25609 * 5 4 3 32 32 H 1.09006 * 109.46838 * 55.19761 * 8 6 5 33 33 H 1.09003 * 109.47274 * 295.20039 * 8 6 5 34 34 H 1.08997 * 109.47266 * 79.75489 * 10 9 8 35 35 H 1.09007 * 109.47212 * 319.75228 * 10 9 8 36 36 H 0.96995 * 119.99864 * 0.02562 * 14 13 11 37 37 H 1.09003 * 115.54678 * 288.77887 * 19 9 8 38 38 H 1.09007 * 117.49402 * 0.02562 * 20 19 9 39 39 H 1.08999 * 117.49950 * 145.01554 * 20 19 9 40 40 H 1.08998 * 117.49775 * 214.97593 * 21 19 9 41 41 H 1.08998 * 117.50273 * 0.02562 * 21 19 9 42 42 H 1.08998 * 109.46195 * 65.82475 * 22 2 1 43 43 H 1.09002 * 109.46176 * 305.85902 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3341 0.1467 5 6 4.1187 0.5368 -1.0144 6 6 3.5181 -0.8716 -1.0209 7 1 3.7812 -1.3843 -0.0957 8 6 4.0679 -1.6560 -2.2138 9 7 3.5818 -3.0410 -2.1552 10 6 3.8897 -3.7600 -3.3986 11 6 2.9928 -4.9653 -3.5171 12 1 2.3025 -5.2051 -2.7219 13 6 3.0535 -5.7619 -4.6409 14 7 3.8936 -5.4696 -5.6096 15 14 1.9423 -7.2563 -4.7874 16 1 2.6286 -8.4416 -4.2139 17 1 0.6794 -7.0087 -4.0464 18 1 1.6354 -7.5064 -6.2187 19 6 4.1347 -3.7441 -0.9898 20 6 3.2227 -4.7361 -0.2651 21 6 3.5614 -3.3929 0.3845 22 6 1.9952 -0.7708 -1.1337 23 1 -0.3634 -1.0249 0.0755 24 1 -0.3634 0.5778 0.8498 25 1 -0.3633 0.4471 -0.9253 26 1 1.7324 1.8608 -0.9376 27 1 1.5635 1.9257 0.8330 28 1 3.9099 2.3512 0.1309 29 1 3.7813 0.8573 1.0909 30 1 5.1997 0.4713 -0.8905 31 1 3.8887 1.0353 -1.9561 32 1 5.1575 -1.6516 -2.1805 33 1 3.7309 -1.1916 -3.1405 34 1 4.9309 -4.0820 -3.3839 35 1 3.7255 -3.0998 -4.2504 36 1 4.4708 -4.6938 -5.5333 37 1 5.1964 -3.9843 -1.0459 38 1 2.2126 -4.8673 -0.6534 39 1 3.6844 -5.6294 0.1556 40 1 4.2458 -3.4025 1.2327 41 1 2.7737 -2.6405 0.4240 42 1 1.7324 -0.2709 -2.0660 43 1 1.5633 -1.7716 -1.1242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686011027.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:21 Heat of formation + Delta-G solvation = 7.215652 kcal Electronic energy + Delta-G solvation = -19821.230519 eV Core-core repulsion = 17093.929109 eV Total energy + Delta-G solvation = -2727.301410 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.59874 -38.86048 -35.77666 -35.17762 -33.86687 -32.12352 -28.51690 -27.65604 -25.97416 -24.36870 -23.79080 -23.29953 -22.54523 -21.05262 -20.51995 -18.93478 -16.97404 -16.58337 -16.30029 -16.17132 -15.71951 -15.61812 -15.40813 -15.25354 -14.55396 -14.31497 -13.77250 -13.73456 -13.43576 -13.36300 -13.09122 -13.04776 -12.63544 -12.51029 -12.31995 -12.21898 -11.95367 -11.92905 -11.63773 -11.34213 -11.21303 -10.89993 -10.81062 -10.64218 -10.52807 -9.27715 -9.10479 -8.62310 -6.32191 1.52528 1.62048 1.79737 2.56709 2.96888 2.99809 3.08569 3.19644 3.86298 3.89117 3.95908 4.11143 4.15281 4.22415 4.34654 4.39048 4.47709 4.54279 4.55882 4.61929 4.69071 4.74514 4.78018 4.83787 4.86624 4.88799 4.93160 4.99252 5.01417 5.05176 5.11926 5.21790 5.23902 5.38930 5.42267 5.52408 5.85803 6.06467 6.12149 6.21658 6.46218 6.48262 6.67471 7.47195 8.74992 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.026284 B = 0.005613 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.043854 B = 4986.921323 C = 5086.880802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.549 5.549 3 C 0.052 3.948 4 C -0.108 4.108 5 C -0.116 4.116 6 C -0.079 4.079 7 H 0.097 0.903 8 C 0.063 3.937 9 N -0.503 5.503 10 C 0.198 3.802 11 C -0.581 4.581 12 H 0.060 0.940 13 C -0.042 4.042 14 N -0.944 5.944 15 Si 1.121 2.879 16 H -0.273 1.273 17 H -0.270 1.270 18 H -0.285 1.285 19 C 0.000 4.000 20 C -0.160 4.160 21 C -0.148 4.148 22 C 0.080 3.920 23 H 0.062 0.938 24 H 0.086 0.914 25 H 0.019 0.981 26 H 0.024 0.976 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.022 0.978 33 H 0.049 0.951 34 H -0.047 1.047 35 H -0.007 1.007 36 H 0.251 0.749 37 H 0.059 0.941 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.010 0.990 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.959 12.667 14.542 19.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.273 5.273 3 C -0.076 4.076 4 C -0.145 4.145 5 C -0.154 4.154 6 C -0.098 4.098 7 H 0.115 0.885 8 C -0.065 4.065 9 N -0.227 5.227 10 C 0.071 3.929 11 C -0.619 4.619 12 H 0.078 0.922 13 C -0.238 4.238 14 N -0.583 5.583 15 Si 0.943 3.057 16 H -0.199 1.199 17 H -0.195 1.195 18 H -0.211 1.211 19 C -0.109 4.109 20 C -0.197 4.197 21 C -0.185 4.185 22 C -0.048 4.048 23 H 0.081 0.919 24 H 0.105 0.895 25 H 0.037 0.963 26 H 0.043 0.957 27 H 0.109 0.891 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.040 0.960 33 H 0.068 0.932 34 H -0.029 1.029 35 H 0.011 0.989 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.116 0.884 40 H 0.131 0.869 41 H 0.128 0.872 42 H 0.028 0.972 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.727 11.217 14.041 18.353 hybrid contribution 1.337 1.495 -0.741 2.138 sum -2.389 12.712 13.300 18.553 Atomic orbital electron populations 1.22374 0.86752 1.02390 1.00739 1.61962 1.08189 1.14221 1.42937 1.22196 0.96188 0.88616 1.00564 1.21536 0.93924 1.00646 0.98414 1.21630 1.00276 0.94437 0.99044 1.21373 0.94185 0.95745 0.98477 0.88500 1.22130 0.96426 0.89218 0.98730 1.61775 1.57871 1.01055 1.01985 1.19517 0.92694 0.93350 0.87307 1.22311 1.22694 1.10816 1.06079 0.92205 1.27353 0.99369 1.04871 0.92209 1.70900 1.23733 1.28650 1.35028 0.82875 0.74424 0.72199 0.76221 1.19901 1.19472 1.21085 1.22135 0.94376 1.03997 0.90377 1.22866 1.00309 0.93736 1.02818 1.23272 1.03491 0.98324 0.93374 1.21835 0.95256 0.97497 0.90214 0.91872 0.89533 0.96263 0.95725 0.89144 0.89595 0.90916 0.91257 0.92962 0.95952 0.93241 1.02904 0.98881 0.94017 0.92342 0.90226 0.88446 0.86911 0.87211 0.97155 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.59 127.69 1.22 1.77 16 2 N -0.55 -13.50 4.91 -922.60 -4.53 -18.03 16 3 C 0.05 1.04 5.46 86.33 0.47 1.51 16 4 C -0.11 -2.01 6.09 30.65 0.19 -1.82 16 5 C -0.12 -2.71 5.29 30.67 0.16 -2.54 16 6 C -0.08 -2.31 1.86 -10.74 -0.02 -2.33 16 7 H 0.10 2.81 4.53 -2.39 -0.01 2.80 16 8 C 0.06 2.36 4.33 86.30 0.37 2.73 16 9 N -0.50 -22.10 4.03 -875.50 -3.53 -25.63 16 10 C 0.20 10.78 4.09 85.56 0.35 11.13 16 11 C -0.58 -33.67 8.83 25.60 0.23 -33.45 16 12 H 0.06 3.42 6.31 -2.91 -0.02 3.40 16 13 C -0.04 -2.46 5.46 84.66 0.46 -2.00 16 14 N -0.94 -59.80 13.65 21.45 0.29 -59.50 16 15 Si 1.12 51.68 29.90 68.60 2.05 53.73 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 17 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 18 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 19 C 0.00 0.01 4.56 44.91 0.20 0.21 16 20 C -0.16 -5.75 9.67 30.59 0.30 -5.46 16 21 C -0.15 -4.46 8.21 30.59 0.25 -4.21 16 22 C 0.08 2.43 3.98 86.33 0.34 2.77 16 23 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.09 1.46 8.09 -2.39 -0.02 1.44 16 25 H 0.02 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.02 0.52 8.14 -2.38 -0.02 0.50 16 27 H 0.09 1.46 8.09 -2.39 -0.02 1.44 16 28 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.02 0.82 8.12 -2.38 -0.02 0.80 16 33 H 0.05 1.94 7.83 -2.39 -0.02 1.92 16 34 H -0.05 -2.73 7.95 -2.39 -0.02 -2.75 16 35 H -0.01 -0.40 7.48 -2.38 -0.02 -0.42 16 36 H 0.25 16.16 7.21 -92.71 -0.67 15.49 16 37 H 0.06 2.40 8.13 -2.39 -0.02 2.38 16 38 H 0.08 3.19 7.26 -2.38 -0.02 3.17 16 39 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 40 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 41 H 0.11 3.36 5.33 -2.39 -0.01 3.34 16 42 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.06 2.28 7.22 -2.39 -0.02 2.26 16 Total: -1.00 -66.16 326.21 -0.14 -66.29 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 1.05 Total: 14.81 kcal Atomic # 6 Polarization: -36.20 SS G_CDS: 4.53 Total: -31.67 kcal Atomic # 7 Polarization: -95.39 SS G_CDS: -7.77 Total: -103.16 kcal Atomic # 14 Polarization: 51.68 SS G_CDS: 2.05 Total: 53.73 kcal Total: -66.16 -0.14 -66.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686011027.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.507 kcal (2) G-P(sol) polarization free energy of solvation -66.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds