Wall clock time and date at job start Mon Mar 30 2020 04:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46963 * 111.00055 * 2 1 4 4 C 1.53776 * 108.96212 * 180.22757 * 3 2 1 5 5 H 1.09002 * 112.31774 * 187.41178 * 4 3 2 6 6 C 1.54692 * 107.63211 * 312.37928 * 4 3 2 7 7 C 1.54328 * 104.72345 * 87.27968 * 6 4 3 8 8 C 1.54694 * 104.72058 * 0.02562 * 7 6 4 9 9 H 1.09004 * 112.97137 * 148.14161 * 8 7 6 10 10 C 1.46955 * 111.00042 * 235.19599 * 2 1 3 11 11 N 1.48864 * 104.00188 * 25.93877 * 8 7 6 12 12 C 1.46902 * 111.00311 * 76.04190 * 11 8 7 13 13 C 1.53001 * 109.46901 * 56.11820 * 12 11 8 14 14 C 1.53000 * 109.46886 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47060 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00362 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99850 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47052 * 89.99717 * 20 18 16 22 22 H 1.48495 * 109.47307 * 209.99656 * 20 18 16 23 23 H 1.48500 * 109.47143 * 330.00164 * 20 18 16 24 24 H 1.08999 * 109.47124 * 59.99668 * 1 2 3 25 25 H 1.08998 * 109.47267 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46723 * 300.00190 * 1 2 3 27 27 H 1.09000 * 109.55400 * 60.38443 * 3 2 1 28 28 H 1.09000 * 109.63790 * 300.12809 * 3 2 1 29 29 H 1.09001 * 110.38815 * 206.09092 * 6 4 3 30 30 H 1.09000 * 110.38674 * 328.46725 * 6 4 3 31 31 H 1.08990 * 110.38912 * 241.19033 * 7 6 4 32 32 H 1.08997 * 110.38598 * 118.80944 * 7 6 4 33 33 H 1.09001 * 109.55392 * 299.61766 * 10 2 1 34 34 H 1.08998 * 109.55558 * 59.81913 * 10 2 1 35 35 H 1.09001 * 109.46712 * 296.12222 * 12 11 8 36 36 H 1.09002 * 109.47411 * 176.12334 * 12 11 8 37 37 H 1.09001 * 109.46652 * 60.00371 * 13 12 11 38 38 H 1.08992 * 109.47514 * 300.00460 * 13 12 11 39 39 H 1.09002 * 109.47398 * 300.00496 * 14 13 12 40 40 H 1.09001 * 109.47194 * 60.00677 * 14 13 12 41 41 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 42 42 H 1.08998 * 109.47533 * 59.99948 * 15 14 13 43 43 H 0.96994 * 119.99814 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5324 1.3173 -0.0058 5 1 3.9822 2.3017 0.1240 6 6 3.9694 0.3060 1.0802 7 6 3.9694 -1.0617 0.3653 8 6 3.5330 -0.7471 -1.0851 9 1 3.9829 -1.4156 -1.8192 10 6 1.9956 -0.7831 -1.1265 11 7 3.9395 0.6711 -1.2840 12 6 5.3899 0.7791 -1.4904 13 6 5.8039 -0.1013 -2.6713 14 6 7.3146 0.0107 -2.8859 15 6 7.7285 -0.8692 -4.0672 16 6 9.2166 -0.7595 -4.2783 17 1 9.8081 -0.1259 -3.6340 18 6 9.8231 -1.4688 -5.2931 19 7 11.1219 -1.3734 -5.4770 20 14 8.8004 -2.5664 -6.4061 21 1 8.3256 -1.7820 -7.5743 22 1 9.6303 -3.7038 -6.8780 23 1 7.6320 -3.0859 -5.6510 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6525 1.8945 0.8930 28 1 1.6459 1.8987 -0.8879 29 1 4.9694 0.5455 1.4417 30 1 3.2570 0.3033 1.9052 31 1 3.2570 -1.7374 0.8384 32 1 4.9694 -1.4952 0.3750 33 1 1.6525 -1.8145 -1.0459 34 1 1.6443 -0.3541 -2.0649 35 1 5.9104 0.4492 -0.5913 36 1 5.6508 1.8162 -1.7014 37 1 5.2833 0.2286 -3.5704 38 1 5.5431 -1.1383 -2.4604 39 1 7.5758 1.0477 -3.0967 40 1 7.8348 -0.3195 -1.9868 41 1 7.4672 -1.9063 -3.8568 42 1 7.2083 -0.5388 -4.9662 43 1 11.5484 -1.8721 -6.1912 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687266512.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:03 Heat of formation + Delta-G solvation = 4.297189 kcal Electronic energy + Delta-G solvation = -19263.475905 eV Core-core repulsion = 16536.047941 eV Total energy + Delta-G solvation = -2727.427964 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.82463 -36.34624 -34.61384 -32.54515 -31.44050 -30.88171 -28.74931 -27.49655 -24.72324 -24.59727 -23.03416 -21.32463 -20.48121 -19.77087 -18.83350 -16.71076 -16.59474 -16.00031 -15.18123 -14.76639 -14.37755 -14.26044 -14.05646 -13.87489 -13.48072 -12.88626 -12.68290 -12.60819 -12.34844 -12.17362 -11.80958 -11.77631 -11.43663 -11.16587 -11.02665 -10.90508 -10.72769 -10.68150 -10.38551 -10.32204 -9.85595 -9.62419 -9.43883 -9.12215 -8.54623 -8.50159 -8.42393 -6.00916 -3.98369 3.33357 3.40317 3.44707 3.73642 3.90999 4.48578 4.60221 4.65573 4.89456 4.91762 5.02715 5.15656 5.24644 5.26137 5.33028 5.38692 5.39907 5.50257 5.52661 5.60488 5.62750 5.71878 5.79144 5.85328 5.87264 5.95950 6.04078 6.15210 6.18719 6.28833 6.39729 6.68484 6.77674 6.79584 6.81956 6.94541 6.97746 7.18214 7.37201 7.50106 7.84443 8.58606 9.04547 9.62174 11.12776 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.040043 B = 0.004053 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.074838 B = 6906.607131 C = 7241.988555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.542 5.542 3 C 0.068 3.932 4 C 0.057 3.943 5 H 0.096 0.904 6 C -0.132 4.132 7 C -0.133 4.133 8 C 0.053 3.947 9 H 0.107 0.893 10 C 0.067 3.933 11 N -0.508 5.508 12 C 0.045 3.955 13 C -0.119 4.119 14 C -0.100 4.100 15 C -0.014 4.014 16 C -0.519 4.519 17 H 0.071 0.929 18 C 0.064 3.936 19 N -0.906 5.906 20 Si 0.881 3.119 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.266 1.266 24 H 0.024 0.976 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.041 0.959 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.042 0.958 35 H 0.038 0.962 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.013 0.987 42 H 0.010 0.990 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.347 3.162 12.801 25.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.266 5.266 3 C -0.060 4.060 4 C -0.052 4.052 5 H 0.114 0.886 6 C -0.172 4.172 7 C -0.172 4.172 8 C -0.056 4.056 9 H 0.125 0.875 10 C -0.061 4.061 11 N -0.231 5.231 12 C -0.082 4.082 13 C -0.157 4.157 14 C -0.139 4.139 15 C -0.051 4.051 16 C -0.557 4.557 17 H 0.089 0.911 18 C -0.136 4.136 19 N -0.545 5.545 20 Si 0.708 3.292 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.190 1.190 24 H 0.042 0.958 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.032 0.968 42 H 0.029 0.971 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.300 3.142 12.616 24.955 hybrid contribution -0.200 -0.552 -0.714 0.924 sum -21.500 2.590 11.902 24.711 Atomic orbital electron populations 1.22317 0.87540 1.01877 1.00461 1.61935 1.07162 1.13619 1.43932 1.22219 0.94147 0.89072 1.00562 1.23214 0.94845 0.98280 0.88880 0.88562 1.22689 1.00665 0.94893 0.98905 1.22691 1.00993 0.97717 0.95839 1.23347 0.94562 0.91080 0.96576 0.87543 1.22267 0.94347 0.97719 0.91813 1.65720 1.15547 1.10301 1.31512 1.22290 0.86732 1.00919 0.98288 1.21765 0.98075 0.98602 0.97251 1.21412 0.92111 1.00574 0.99759 1.19564 0.97107 0.94920 0.93499 1.21193 0.91271 1.27627 1.15636 0.91134 1.25052 0.94797 0.96513 0.97284 1.69922 1.09342 1.42796 1.32472 0.86760 0.80615 0.80612 0.81189 1.20317 1.21448 1.19033 0.95757 0.91531 0.91584 0.90732 0.94066 0.92477 0.90722 0.90709 0.92234 0.90628 0.94012 0.94389 0.90878 0.91845 0.92520 0.92864 0.93046 0.96830 0.97137 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.61 60.06 0.58 0.79 16 2 N -0.54 -5.38 3.87 -241.77 -0.94 -6.32 16 3 C 0.07 0.68 5.07 -3.39 -0.02 0.66 16 4 C 0.06 0.62 3.75 -65.31 -0.24 0.38 16 5 H 0.10 0.98 8.13 -51.93 -0.42 0.56 16 6 C -0.13 -1.41 5.41 -25.15 -0.14 -1.55 16 7 C -0.13 -1.51 5.48 -25.14 -0.14 -1.65 16 8 C 0.05 0.64 3.45 -65.30 -0.23 0.41 16 9 H 0.11 1.36 5.85 -51.93 -0.30 1.06 16 10 C 0.07 0.71 5.06 -3.36 -0.02 0.70 16 11 N -0.51 -6.52 5.17 -212.46 -1.10 -7.62 16 12 C 0.05 0.64 4.93 -3.82 -0.02 0.62 16 13 C -0.12 -1.95 4.95 -26.73 -0.13 -2.08 16 14 C -0.10 -2.01 5.15 -26.73 -0.14 -2.15 16 15 C -0.01 -0.33 4.04 -27.89 -0.11 -0.44 16 16 C -0.52 -15.19 9.66 -34.44 -0.33 -15.52 16 17 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 18 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 19 N -0.91 -28.50 13.96 55.43 0.77 -27.73 16 20 Si 0.88 22.20 27.47 -169.99 -4.67 17.53 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 24 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 25 H 0.07 0.48 8.13 -51.93 -0.42 0.06 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.62 7.87 -51.93 -0.41 0.21 16 30 H 0.07 0.76 7.81 -51.93 -0.41 0.36 16 31 H 0.07 0.82 7.80 -51.93 -0.41 0.42 16 32 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.04 0.54 6.71 -51.93 -0.35 0.19 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.06 0.91 6.09 -51.93 -0.32 0.59 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 42 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 43 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 322.25 15.07 4.86 4.86 Total: -1.00 -30.85 322.25 -10.14 -40.99 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -8.03 Total: -3.67 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -1.03 Total: -18.03 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: -1.26 Total: -41.67 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.85 -10.14 -40.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687266512.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.286 kcal (2) G-P(sol) polarization free energy of solvation -30.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds