Wall clock time and date at job start Mon Mar 30 2020 04:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46963 * 111.00055 * 2 1 4 4 C 1.53776 * 108.96212 * 180.22757 * 3 2 1 5 5 H 1.09002 * 112.31774 * 187.41178 * 4 3 2 6 6 C 1.54692 * 107.63211 * 312.37928 * 4 3 2 7 7 C 1.54328 * 104.72345 * 87.27968 * 6 4 3 8 8 C 1.54694 * 104.72058 * 0.02562 * 7 6 4 9 9 H 1.09004 * 112.97137 * 148.14161 * 8 7 6 10 10 C 1.46955 * 111.00042 * 235.19599 * 2 1 3 11 11 N 1.48864 * 104.00188 * 25.93877 * 8 7 6 12 12 C 1.46902 * 111.00311 * 76.04190 * 11 8 7 13 13 C 1.53001 * 109.46901 * 56.11820 * 12 11 8 14 14 C 1.53000 * 109.46886 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47060 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00362 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99850 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47052 * 89.99717 * 20 18 16 22 22 H 1.48495 * 109.47307 * 209.99656 * 20 18 16 23 23 H 1.48500 * 109.47143 * 330.00164 * 20 18 16 24 24 H 1.08999 * 109.47124 * 59.99668 * 1 2 3 25 25 H 1.08998 * 109.47267 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46723 * 300.00190 * 1 2 3 27 27 H 1.09000 * 109.55400 * 60.38443 * 3 2 1 28 28 H 1.09000 * 109.63790 * 300.12809 * 3 2 1 29 29 H 1.09001 * 110.38815 * 206.09092 * 6 4 3 30 30 H 1.09000 * 110.38674 * 328.46725 * 6 4 3 31 31 H 1.08990 * 110.38912 * 241.19033 * 7 6 4 32 32 H 1.08997 * 110.38598 * 118.80944 * 7 6 4 33 33 H 1.09001 * 109.55392 * 299.61766 * 10 2 1 34 34 H 1.08998 * 109.55558 * 59.81913 * 10 2 1 35 35 H 1.09001 * 109.46712 * 296.12222 * 12 11 8 36 36 H 1.09002 * 109.47411 * 176.12334 * 12 11 8 37 37 H 1.09001 * 109.46652 * 60.00371 * 13 12 11 38 38 H 1.08992 * 109.47514 * 300.00460 * 13 12 11 39 39 H 1.09002 * 109.47398 * 300.00496 * 14 13 12 40 40 H 1.09001 * 109.47194 * 60.00677 * 14 13 12 41 41 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 42 42 H 1.08998 * 109.47533 * 59.99948 * 15 14 13 43 43 H 0.96994 * 119.99814 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5324 1.3173 -0.0058 5 1 3.9822 2.3017 0.1240 6 6 3.9694 0.3060 1.0802 7 6 3.9694 -1.0617 0.3653 8 6 3.5330 -0.7471 -1.0851 9 1 3.9829 -1.4156 -1.8192 10 6 1.9956 -0.7831 -1.1265 11 7 3.9395 0.6711 -1.2840 12 6 5.3899 0.7791 -1.4904 13 6 5.8039 -0.1013 -2.6713 14 6 7.3146 0.0107 -2.8859 15 6 7.7285 -0.8692 -4.0672 16 6 9.2166 -0.7595 -4.2783 17 1 9.8081 -0.1259 -3.6340 18 6 9.8231 -1.4688 -5.2931 19 7 11.1219 -1.3734 -5.4770 20 14 8.8004 -2.5664 -6.4061 21 1 8.3256 -1.7820 -7.5743 22 1 9.6303 -3.7038 -6.8780 23 1 7.6320 -3.0859 -5.6510 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6525 1.8945 0.8930 28 1 1.6459 1.8987 -0.8879 29 1 4.9694 0.5455 1.4417 30 1 3.2570 0.3033 1.9052 31 1 3.2570 -1.7374 0.8384 32 1 4.9694 -1.4952 0.3750 33 1 1.6525 -1.8145 -1.0459 34 1 1.6443 -0.3541 -2.0649 35 1 5.9104 0.4492 -0.5913 36 1 5.6508 1.8162 -1.7014 37 1 5.2833 0.2286 -3.5704 38 1 5.5431 -1.1383 -2.4604 39 1 7.5758 1.0477 -3.0967 40 1 7.8348 -0.3195 -1.9868 41 1 7.4672 -1.9063 -3.8568 42 1 7.2083 -0.5388 -4.9662 43 1 11.5484 -1.8721 -6.1912 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687266512.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:03 Heat of formation + Delta-G solvation = -15.820407 kcal Electronic energy + Delta-G solvation = -19264.348269 eV Core-core repulsion = 16536.047941 eV Total energy + Delta-G solvation = -2728.300328 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.71545 -37.41269 -36.08784 -34.45813 -32.36580 -32.24637 -30.01365 -28.59589 -26.07453 -25.55643 -24.13309 -22.52437 -22.02127 -20.98456 -19.73665 -18.84116 -17.60028 -16.96352 -16.34489 -16.18908 -15.75061 -15.36214 -15.10353 -14.88238 -14.67963 -14.30990 -14.03982 -13.80099 -13.65268 -13.38225 -12.99923 -12.92637 -12.63082 -12.42345 -12.34198 -12.17380 -11.85055 -11.76567 -11.68388 -11.57737 -11.39206 -11.26361 -11.19388 -11.07623 -10.76989 -9.48778 -9.22781 -8.30292 -6.34457 1.35235 1.37046 1.49573 2.35914 2.90788 3.03806 3.04996 3.73680 3.77621 3.97811 4.03357 4.13554 4.23655 4.29263 4.39216 4.46739 4.52042 4.54517 4.61273 4.65223 4.67639 4.79674 4.82393 4.88177 4.91608 4.99722 5.05005 5.07046 5.10208 5.12873 5.17933 5.22593 5.28237 5.40464 5.55777 5.63420 5.67520 5.88389 6.00593 6.14029 6.23879 6.28805 6.73780 7.30385 8.86798 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.040043 B = 0.004053 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.074838 B = 6906.607131 C = 7241.988555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.546 5.546 3 C 0.072 3.928 4 C 0.055 3.945 5 H 0.103 0.897 6 C -0.127 4.127 7 C -0.130 4.130 8 C 0.049 3.951 9 H 0.097 0.903 10 C 0.071 3.929 11 N -0.517 5.517 12 C 0.055 3.945 13 C -0.106 4.106 14 C -0.093 4.093 15 C -0.011 4.011 16 C -0.535 4.535 17 H 0.030 0.970 18 C 0.001 3.999 19 N -0.953 5.953 20 Si 0.954 3.046 21 H -0.266 1.266 22 H -0.282 1.282 23 H -0.246 1.246 24 H 0.022 0.978 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.031 0.969 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.031 0.969 35 H 0.036 0.964 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.047 0.953 40 H 0.045 0.955 41 H 0.018 0.982 42 H 0.016 0.984 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.003 2.605 13.159 27.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.271 5.271 3 C -0.057 4.057 4 C -0.054 4.054 5 H 0.121 0.879 6 C -0.166 4.166 7 C -0.169 4.169 8 C -0.060 4.060 9 H 0.115 0.885 10 C -0.057 4.057 11 N -0.240 5.240 12 C -0.073 4.073 13 C -0.144 4.144 14 C -0.131 4.131 15 C -0.049 4.049 16 C -0.573 4.573 17 H 0.048 0.952 18 C -0.195 4.195 19 N -0.594 5.594 20 Si 0.777 3.223 21 H -0.191 1.191 22 H -0.208 1.208 23 H -0.170 1.170 24 H 0.040 0.960 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.111 0.889 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.105 0.895 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.036 0.964 42 H 0.035 0.965 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.977 2.596 12.994 27.395 hybrid contribution 0.686 -0.323 -0.768 1.079 sum -23.291 2.273 12.226 26.403 Atomic orbital electron populations 1.22365 0.86194 1.02595 1.00935 1.61971 1.08384 1.13452 1.43313 1.22214 0.93235 0.89222 1.00983 1.23323 0.95738 0.98464 0.87890 0.87919 1.22642 1.00712 0.94312 0.98932 1.22648 1.00449 0.98172 0.95608 1.23380 0.95576 0.90425 0.96647 0.88502 1.22208 0.93288 0.98509 0.91695 1.65728 1.14219 1.11096 1.32963 1.22097 0.87904 1.00241 0.97104 1.21577 0.94927 0.99589 0.98279 1.21276 0.94871 0.99208 0.97764 1.19528 0.93793 0.96073 0.95460 1.21564 0.93742 1.26920 1.15075 0.95210 1.26078 0.96063 0.98269 0.99134 1.70077 1.11497 1.44241 1.33609 0.85606 0.79248 0.78442 0.79041 1.19112 1.20821 1.16988 0.95984 0.90752 0.90362 0.88925 0.95022 0.92815 0.89898 0.90158 0.93336 0.89475 0.95113 0.94533 0.90897 0.91997 0.91972 0.93464 0.93612 0.96352 0.96518 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.61 127.69 1.23 1.59 16 2 N -0.55 -9.53 3.87 -918.82 -3.56 -13.09 16 3 C 0.07 1.25 5.07 86.55 0.44 1.69 16 4 C 0.05 1.08 3.75 45.37 0.17 1.25 16 5 H 0.10 1.90 8.13 -2.39 -0.02 1.88 16 6 C -0.13 -2.46 5.41 31.62 0.17 -2.29 16 7 C -0.13 -2.73 5.48 31.62 0.17 -2.56 16 8 C 0.05 1.09 3.45 45.39 0.16 1.25 16 9 H 0.10 2.34 5.85 -2.39 -0.01 2.33 16 10 C 0.07 1.39 5.06 86.57 0.44 1.83 16 11 N -0.52 -12.49 5.17 -826.10 -4.27 -16.75 16 12 C 0.05 1.47 4.93 86.30 0.43 1.90 16 13 C -0.11 -3.34 4.95 30.59 0.15 -3.19 16 14 C -0.09 -3.71 5.15 30.59 0.16 -3.55 16 15 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 16 C -0.54 -31.94 9.66 25.60 0.25 -31.70 16 17 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 18 C 0.00 0.06 5.47 84.65 0.46 0.52 16 19 N -0.95 -61.26 13.96 21.45 0.30 -60.96 16 20 Si 0.95 45.29 27.47 68.60 1.88 47.18 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 22 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 24 H 0.02 0.31 8.14 -2.39 -0.02 0.29 16 25 H 0.07 0.88 8.13 -2.39 -0.02 0.86 16 26 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.09 1.29 8.14 -2.39 -0.02 1.28 16 28 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.05 1.08 7.87 -2.39 -0.02 1.06 16 30 H 0.08 1.48 7.81 -2.39 -0.02 1.46 16 31 H 0.08 1.60 7.80 -2.39 -0.02 1.58 16 32 H 0.05 1.12 8.11 -2.39 -0.02 1.10 16 33 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.04 0.99 6.71 -2.39 -0.02 0.98 16 36 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.06 1.90 6.09 -2.39 -0.01 1.89 16 39 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.02 0.86 7.20 -2.39 -0.02 0.85 16 42 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 43 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -66.34 322.25 -0.42 -66.76 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 0.88 Total: 10.54 kcal Atomic # 6 Polarization: -38.02 SS G_CDS: 4.34 Total: -33.68 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -7.53 Total: -90.80 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.88 Total: 47.18 kcal Total: -66.34 -0.42 -66.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687266512.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.944 kcal (2) G-P(sol) polarization free energy of solvation -66.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds