Wall clock time and date at job start Mon Mar 30 2020 04:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48519 * 110.99688 * 2 1 4 4 C 1.54286 * 104.71547 * 200.72314 * 3 2 1 5 5 H 1.09006 * 112.37968 * 261.44906 * 4 3 2 6 6 C 1.54286 * 108.81995 * 136.32271 * 4 3 2 7 7 N 1.49534 * 104.22309 * 224.61156 * 6 4 3 8 8 C 1.46902 * 111.05264 * 158.91607 * 7 6 4 9 9 C 1.53003 * 109.46691 * 54.15547 * 8 7 6 10 10 C 1.52999 * 109.46844 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47215 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47468 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99992 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00223 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99927 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00050 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47115 * 60.00098 * 16 14 12 18 18 H 1.48493 * 109.46971 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46829 * 300.00065 * 16 14 12 20 20 C 1.48520 * 104.54341 * 39.14476 * 7 6 4 21 21 C 1.54283 * 104.71718 * 320.53249 * 20 7 6 22 22 H 1.09001 * 112.37767 * 261.44590 * 21 20 7 23 23 C 1.48523 * 110.99789 * 244.60888 * 2 1 3 24 24 H 1.09002 * 109.47401 * 59.99591 * 1 2 3 25 25 H 1.09001 * 109.46874 * 299.99604 * 1 2 3 26 26 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 27 27 H 1.08994 * 110.39469 * 319.53271 * 3 2 1 28 28 H 1.09001 * 110.38568 * 81.92017 * 3 2 1 29 29 H 1.09000 * 110.38667 * 343.08400 * 6 4 3 30 30 H 1.09007 * 110.38553 * 105.46318 * 6 4 3 31 31 H 1.08998 * 109.46764 * 174.15111 * 8 7 6 32 32 H 1.08996 * 109.47354 * 294.15247 * 8 7 6 33 33 H 1.08998 * 109.47161 * 299.99322 * 9 8 7 34 34 H 1.08996 * 109.47466 * 59.99770 * 9 8 7 35 35 H 1.09000 * 109.47305 * 299.99809 * 10 9 8 36 36 H 1.09001 * 109.47594 * 59.99718 * 10 9 8 37 37 H 1.09000 * 109.47091 * 300.00261 * 11 10 9 38 38 H 1.09009 * 109.47110 * 59.99710 * 11 10 9 39 39 H 0.97008 * 119.99838 * 180.02562 * 15 14 12 40 40 H 1.09000 * 110.38678 * 201.72230 * 20 7 6 41 41 H 1.09002 * 110.38674 * 79.34790 * 20 7 6 42 42 H 1.08991 * 110.38585 * 278.07995 * 23 2 1 43 43 H 1.08992 * 110.38784 * 40.46852 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3866 0.0000 4 6 3.4446 1.2524 -0.5280 5 1 4.1809 1.2380 0.2757 6 6 3.7089 2.3806 -1.5467 7 7 4.4006 1.6959 -2.6820 8 6 4.2845 2.4785 -3.9198 9 6 4.7899 3.9014 -3.6728 10 6 4.6696 4.7163 -4.9620 11 6 5.1744 6.1393 -4.7150 12 6 5.0565 6.9418 -5.9850 13 1 4.6606 6.4830 -6.8790 14 6 5.4529 8.2622 -6.0055 15 7 5.9345 8.8211 -4.9168 16 14 5.3061 9.2572 -7.5797 17 1 3.8842 9.3029 -8.0055 18 1 5.7961 10.6382 -7.3398 19 1 6.1217 8.6210 -8.6452 20 6 3.7040 0.3905 -2.8104 21 6 3.4447 -0.0599 -1.3577 22 1 4.1877 -0.7758 -1.0063 23 6 2.0012 -0.5946 -1.2527 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.4117 2.0197 -0.6630 28 1 2.0032 1.7925 1.0116 29 1 2.7681 2.8161 -1.8835 30 1 4.3474 3.1470 -1.1073 31 1 4.8822 2.0113 -4.7024 32 1 3.2406 2.5127 -4.2315 33 1 4.1921 4.3686 -2.8902 34 1 5.8338 3.8672 -3.3611 35 1 5.2676 4.2490 -5.7444 36 1 3.6258 4.7506 -5.2742 37 1 4.5760 6.6064 -3.9327 38 1 6.2182 6.1054 -4.4026 39 1 6.2131 9.7502 -4.9312 40 1 4.3403 -0.3305 -3.3237 41 1 2.7615 0.5139 -3.3438 42 1 2.0032 -1.6824 -1.1856 43 1 1.4117 -0.2670 -2.1088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687776795.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:06 Heat of formation + Delta-G solvation = -5.416409 kcal Electronic energy + Delta-G solvation = -18664.904414 eV Core-core repulsion = 15937.055237 eV Total energy + Delta-G solvation = -2727.849177 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.37746 -37.09673 -34.65406 -32.79091 -31.32709 -30.79479 -28.39373 -26.32878 -25.96172 -24.23828 -22.18743 -21.64319 -20.41394 -20.22482 -19.31508 -16.86568 -16.18259 -15.69048 -15.28234 -15.14409 -14.62865 -14.49213 -14.27256 -13.88593 -13.38658 -12.83303 -12.51076 -12.31271 -12.20301 -11.90306 -11.85244 -11.73418 -11.29662 -11.23240 -11.12040 -10.94399 -10.91647 -10.75110 -10.53295 -10.46356 -10.34091 -9.61692 -9.25012 -9.00797 -8.86645 -8.37221 -8.31617 -5.97025 -3.99364 3.34441 3.38645 3.41191 3.70355 3.93793 4.24979 4.47580 4.54376 4.57095 4.86527 4.96206 5.11118 5.13309 5.18955 5.20148 5.36353 5.38487 5.41677 5.44784 5.52708 5.54759 5.60287 5.61818 5.68306 5.88778 5.93008 5.99585 6.10597 6.14006 6.27588 6.46980 6.49643 6.68135 6.80345 6.86672 6.96528 7.06166 7.23555 7.71332 7.87478 8.03887 8.46749 9.07878 9.64376 11.14302 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.041969 B = 0.003270 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.000025 B = 8559.711948 C = 8719.822105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.517 5.517 3 C 0.034 3.966 4 C -0.092 4.092 5 H 0.095 0.905 6 C 0.037 3.963 7 N -0.511 5.511 8 C 0.046 3.954 9 C -0.116 4.116 10 C -0.109 4.109 11 C 0.022 3.978 12 C -0.521 4.521 13 H 0.053 0.947 14 C 0.056 3.944 15 N -0.896 5.896 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.036 3.964 21 C -0.090 4.090 22 H 0.095 0.905 23 C 0.035 3.965 24 H 0.028 0.972 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.082 0.918 29 H 0.046 0.954 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.030 0.970 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.043 0.957 37 H 0.014 0.986 38 H 0.016 0.984 39 H 0.261 0.739 40 H 0.080 0.920 41 H 0.042 0.958 42 H 0.081 0.919 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.581 -18.997 9.322 22.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.240 5.240 3 C -0.094 4.094 4 C -0.112 4.112 5 H 0.113 0.887 6 C -0.091 4.091 7 N -0.235 5.235 8 C -0.082 4.082 9 C -0.154 4.154 10 C -0.147 4.147 11 C -0.015 4.015 12 C -0.560 4.560 13 H 0.072 0.928 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.093 4.093 21 C -0.110 4.110 22 H 0.114 0.886 23 C -0.093 4.093 24 H 0.046 0.954 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.101 0.899 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.032 0.968 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.060 0.940 42 H 0.099 0.901 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.798 -19.188 9.949 22.977 hybrid contribution -1.311 1.257 -1.810 2.565 sum -9.109 -17.930 8.138 21.696 Atomic orbital electron populations 1.22511 0.88058 1.02129 1.00932 1.65377 1.08131 1.15597 1.34930 1.23321 0.94692 0.89893 1.01507 1.22666 0.96371 0.94372 0.97796 0.88663 1.23430 0.97726 0.96315 0.91589 1.65609 1.50067 1.02734 1.05095 1.22405 0.99194 0.95166 0.91449 1.21708 1.01499 0.92552 0.99656 1.21599 1.00058 0.98207 0.94861 1.19078 0.96326 0.89332 0.96769 1.21255 1.41868 0.95930 0.96900 0.92842 1.25032 0.95360 0.97922 0.96190 1.69960 1.43133 1.13042 1.27430 0.86669 0.78406 0.79167 0.83822 1.20293 1.21279 1.20245 1.23259 0.97314 0.92892 0.95795 1.22634 0.96318 0.97157 0.94884 0.88642 1.23293 0.94638 1.00276 0.91056 0.95362 0.91205 0.91263 0.93487 0.89919 0.93591 0.89443 0.90727 0.95158 0.92607 0.91609 0.93396 0.93779 0.96794 0.96600 0.92984 0.90114 0.93977 0.90086 0.93629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.53 60.07 0.57 0.67 16 2 N -0.52 -5.02 5.66 -238.43 -1.35 -6.37 16 3 C 0.03 0.33 6.03 -2.25 -0.01 0.32 16 4 C -0.09 -0.96 4.09 -88.08 -0.36 -1.32 16 5 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 6 C 0.04 0.46 4.71 -1.68 -0.01 0.45 16 7 N -0.51 -6.81 5.48 -229.26 -1.26 -8.06 16 8 C 0.05 0.67 5.08 -3.82 -0.02 0.65 16 9 C -0.12 -2.04 4.93 -26.73 -0.13 -2.17 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 11 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 12 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 13 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -27.43 13.29 55.43 0.74 -26.70 16 16 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 C 0.04 0.39 6.05 -2.26 -0.01 0.38 16 21 C -0.09 -0.89 4.12 -88.08 -0.36 -1.25 16 22 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 23 C 0.04 0.32 6.03 -2.25 -0.01 0.31 16 24 H 0.03 0.23 7.97 -51.93 -0.41 -0.18 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.48 6.99 -51.93 -0.36 0.12 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.59 7.02 -51.93 -0.36 0.22 16 30 H 0.09 1.12 7.71 -51.93 -0.40 0.72 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.03 0.44 7.88 -51.93 -0.41 0.03 16 33 H 0.06 0.97 6.84 -51.93 -0.36 0.62 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.04 0.46 6.83 -51.93 -0.35 0.11 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.43 6.91 -51.93 -0.36 0.07 16 LS Contribution 330.60 15.07 4.98 4.98 Total: -1.00 -30.60 330.60 -11.00 -41.60 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -8.06 Total: -4.57 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -1.04 Total: -17.84 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: -1.87 Total: -41.13 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.60 -11.00 -41.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776795.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.185 kcal (2) G-P(sol) polarization free energy of solvation -30.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds