Wall clock time and date at job start Mon Mar 30 2020 04:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48519 * 110.99688 * 2 1 4 4 C 1.54286 * 104.71547 * 200.72314 * 3 2 1 5 5 H 1.09006 * 112.37968 * 261.44906 * 4 3 2 6 6 C 1.54286 * 108.81995 * 136.32271 * 4 3 2 7 7 N 1.49534 * 104.22309 * 224.61156 * 6 4 3 8 8 C 1.46902 * 111.05264 * 158.91607 * 7 6 4 9 9 C 1.53003 * 109.46691 * 54.15547 * 8 7 6 10 10 C 1.52999 * 109.46844 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47215 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47468 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99992 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00223 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99927 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00050 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47115 * 60.00098 * 16 14 12 18 18 H 1.48493 * 109.46971 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46829 * 300.00065 * 16 14 12 20 20 C 1.48520 * 104.54341 * 39.14476 * 7 6 4 21 21 C 1.54283 * 104.71718 * 320.53249 * 20 7 6 22 22 H 1.09001 * 112.37767 * 261.44590 * 21 20 7 23 23 C 1.48523 * 110.99789 * 244.60888 * 2 1 3 24 24 H 1.09002 * 109.47401 * 59.99591 * 1 2 3 25 25 H 1.09001 * 109.46874 * 299.99604 * 1 2 3 26 26 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 27 27 H 1.08994 * 110.39469 * 319.53271 * 3 2 1 28 28 H 1.09001 * 110.38568 * 81.92017 * 3 2 1 29 29 H 1.09000 * 110.38667 * 343.08400 * 6 4 3 30 30 H 1.09007 * 110.38553 * 105.46318 * 6 4 3 31 31 H 1.08998 * 109.46764 * 174.15111 * 8 7 6 32 32 H 1.08996 * 109.47354 * 294.15247 * 8 7 6 33 33 H 1.08998 * 109.47161 * 299.99322 * 9 8 7 34 34 H 1.08996 * 109.47466 * 59.99770 * 9 8 7 35 35 H 1.09000 * 109.47305 * 299.99809 * 10 9 8 36 36 H 1.09001 * 109.47594 * 59.99718 * 10 9 8 37 37 H 1.09000 * 109.47091 * 300.00261 * 11 10 9 38 38 H 1.09009 * 109.47110 * 59.99710 * 11 10 9 39 39 H 0.97008 * 119.99838 * 180.02562 * 15 14 12 40 40 H 1.09000 * 110.38678 * 201.72230 * 20 7 6 41 41 H 1.09002 * 110.38674 * 79.34790 * 20 7 6 42 42 H 1.08991 * 110.38585 * 278.07995 * 23 2 1 43 43 H 1.08992 * 110.38784 * 40.46852 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3866 0.0000 4 6 3.4446 1.2524 -0.5280 5 1 4.1809 1.2380 0.2757 6 6 3.7089 2.3806 -1.5467 7 7 4.4006 1.6959 -2.6820 8 6 4.2845 2.4785 -3.9198 9 6 4.7899 3.9014 -3.6728 10 6 4.6696 4.7163 -4.9620 11 6 5.1744 6.1393 -4.7150 12 6 5.0565 6.9418 -5.9850 13 1 4.6606 6.4830 -6.8790 14 6 5.4529 8.2622 -6.0055 15 7 5.9345 8.8211 -4.9168 16 14 5.3061 9.2572 -7.5797 17 1 3.8842 9.3029 -8.0055 18 1 5.7961 10.6382 -7.3398 19 1 6.1217 8.6210 -8.6452 20 6 3.7040 0.3905 -2.8104 21 6 3.4447 -0.0599 -1.3577 22 1 4.1877 -0.7758 -1.0063 23 6 2.0012 -0.5946 -1.2527 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.4117 2.0197 -0.6630 28 1 2.0032 1.7925 1.0116 29 1 2.7681 2.8161 -1.8835 30 1 4.3474 3.1470 -1.1073 31 1 4.8822 2.0113 -4.7024 32 1 3.2406 2.5127 -4.2315 33 1 4.1921 4.3686 -2.8902 34 1 5.8338 3.8672 -3.3611 35 1 5.2676 4.2490 -5.7444 36 1 3.6258 4.7506 -5.2742 37 1 4.5760 6.6064 -3.9327 38 1 6.2182 6.1054 -4.4026 39 1 6.2131 9.7502 -4.9312 40 1 4.3403 -0.3305 -3.3237 41 1 2.7615 0.5139 -3.3438 42 1 2.0032 -1.6824 -1.1856 43 1 1.4117 -0.2670 -2.1088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687776795.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:06 Heat of formation + Delta-G solvation = -25.893246 kcal Electronic energy + Delta-G solvation = -18665.792356 eV Core-core repulsion = 15937.055237 eV Total energy + Delta-G solvation = -2728.737119 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.22924 -38.12175 -36.29106 -34.55047 -32.68953 -31.64437 -29.93620 -27.42237 -26.94068 -25.73433 -23.57068 -22.45915 -21.92849 -21.43661 -20.30617 -18.42242 -17.68899 -16.73507 -16.54030 -16.31219 -15.99282 -15.61922 -15.30091 -14.89473 -14.62075 -14.35624 -13.73234 -13.64833 -13.48513 -13.30250 -12.85951 -12.78368 -12.68364 -12.48892 -12.38918 -12.21942 -12.15082 -12.05927 -11.77772 -11.75368 -11.56740 -11.36930 -11.31788 -10.99194 -10.56307 -9.66616 -9.33896 -8.20975 -6.32857 1.38573 1.42125 1.50150 2.39950 2.89275 3.04733 3.11583 3.43131 3.70846 3.72629 4.04131 4.05940 4.11522 4.26293 4.35066 4.37624 4.45823 4.49635 4.50478 4.56617 4.68329 4.70643 4.73333 4.76961 4.79671 4.86538 4.88278 4.96781 5.07872 5.15042 5.22511 5.24865 5.30448 5.32318 5.52259 5.74618 5.76451 5.82210 5.85867 5.98920 6.03685 6.24232 6.84356 7.36533 8.90779 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.041969 B = 0.003270 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.000025 B = 8559.711948 C = 8719.822105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.526 5.526 3 C 0.037 3.963 4 C -0.090 4.090 5 H 0.098 0.902 6 C 0.037 3.963 7 N -0.523 5.523 8 C 0.056 3.944 9 C -0.105 4.105 10 C -0.096 4.096 11 C 0.024 3.976 12 C -0.547 4.547 13 H 0.060 0.940 14 C -0.002 4.002 15 N -0.934 5.934 16 Si 0.967 3.033 17 H -0.266 1.266 18 H -0.282 1.282 19 H -0.266 1.266 20 C 0.037 3.963 21 C -0.086 4.086 22 H 0.104 0.896 23 C 0.039 3.961 24 H 0.025 0.975 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.040 0.960 28 H 0.088 0.912 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.034 0.966 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.048 0.952 37 H -0.012 1.012 38 H -0.011 1.011 39 H 0.264 0.736 40 H 0.091 0.909 41 H 0.043 0.957 42 H 0.094 0.906 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.382 -20.252 8.603 23.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.250 5.250 3 C -0.092 4.092 4 C -0.109 4.109 5 H 0.116 0.884 6 C -0.091 4.091 7 N -0.247 5.247 8 C -0.072 4.072 9 C -0.143 4.143 10 C -0.135 4.135 11 C -0.013 4.013 12 C -0.585 4.585 13 H 0.078 0.922 14 C -0.200 4.200 15 N -0.575 5.575 16 Si 0.791 3.209 17 H -0.191 1.191 18 H -0.207 1.207 19 H -0.191 1.191 20 C -0.091 4.091 21 C -0.106 4.106 22 H 0.122 0.878 23 C -0.089 4.089 24 H 0.044 0.956 25 H 0.093 0.907 26 H 0.099 0.901 27 H 0.058 0.942 28 H 0.106 0.894 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.007 0.993 38 H 0.007 0.993 39 H 0.073 0.927 40 H 0.109 0.891 41 H 0.062 0.938 42 H 0.112 0.888 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.608 -20.466 9.231 24.045 hybrid contribution -1.052 1.649 -1.534 2.485 sum -9.660 -18.817 7.697 22.509 Atomic orbital electron populations 1.22556 0.87084 1.02935 1.01079 1.65401 1.09146 1.15209 1.35230 1.23274 0.94118 0.90172 1.01588 1.22636 0.96907 0.93963 0.97438 0.88378 1.23413 0.97003 0.96820 0.91892 1.65590 1.50994 1.03591 1.04500 1.22200 0.99228 0.93347 0.92407 1.21521 1.01045 0.94142 0.97585 1.21403 0.99938 0.95343 0.96780 1.19000 0.94429 0.92497 0.95340 1.21717 1.42120 0.96818 0.97855 0.92176 1.26029 0.94683 0.99259 1.00033 1.70101 1.43884 1.13563 1.29909 0.85481 0.78993 0.77324 0.79140 1.19090 1.20728 1.19085 1.23315 0.97319 0.91676 0.96756 1.22638 0.97152 0.96879 0.93881 0.87818 1.23290 0.93885 1.00967 0.90785 0.95628 0.90674 0.90137 0.94217 0.89387 0.94243 0.90583 0.90172 0.94795 0.92992 0.92587 0.92894 0.93292 0.99331 0.99255 0.92731 0.89113 0.93848 0.88777 0.93872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.53 127.69 1.22 1.39 16 2 N -0.53 -9.26 5.66 -908.25 -5.14 -14.40 16 3 C 0.04 0.68 6.03 86.43 0.52 1.20 16 4 C -0.09 -1.77 4.09 -9.15 -0.04 -1.81 16 5 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 6 C 0.04 0.89 4.71 86.23 0.41 1.30 16 7 N -0.52 -13.38 5.48 -879.25 -4.82 -18.20 16 8 C 0.06 1.60 5.08 86.30 0.44 2.04 16 9 C -0.11 -3.70 4.93 30.59 0.15 -3.55 16 10 C -0.10 -4.07 5.15 30.59 0.16 -3.92 16 11 C 0.02 1.34 4.97 29.85 0.15 1.48 16 12 C -0.55 -32.05 9.11 25.60 0.23 -31.82 16 13 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 14 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 15 N -0.93 -58.18 13.29 21.45 0.28 -57.89 16 16 Si 0.97 44.91 29.54 68.60 2.03 46.93 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 C 0.04 0.75 6.05 86.42 0.52 1.27 16 21 C -0.09 -1.53 4.12 -9.15 -0.04 -1.56 16 22 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 23 C 0.04 0.62 6.03 86.43 0.52 1.14 16 24 H 0.03 0.38 7.97 -2.39 -0.02 0.36 16 25 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 27 H 0.04 0.79 6.99 -2.39 -0.02 0.77 16 28 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.04 1.00 7.02 -2.39 -0.02 0.99 16 30 H 0.08 1.99 7.71 -2.38 -0.02 1.97 16 31 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.03 0.94 7.88 -2.39 -0.02 0.92 16 33 H 0.05 1.85 6.84 -2.39 -0.02 1.83 16 34 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 37 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 38 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 39 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 40 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.04 0.87 6.83 -2.39 -0.02 0.86 16 42 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.04 0.72 6.91 -2.39 -0.02 0.71 16 Total: -1.00 -65.17 330.60 -2.01 -67.18 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 0.94 Total: 8.89 kcal Atomic # 6 Polarization: -37.22 SS G_CDS: 4.70 Total: -32.52 kcal Atomic # 7 Polarization: -80.81 SS G_CDS: -9.67 Total: -90.49 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -65.17 -2.01 -67.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776795.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.289 kcal (2) G-P(sol) polarization free energy of solvation -65.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds