Wall clock time and date at job start Mon Mar 30 2020 04:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.50278 * 110.99847 * 2 1 4 4 C 1.51050 * 101.85975 * 212.17630 * 3 2 1 5 5 H 1.09000 * 110.25997 * 291.99566 * 4 3 2 6 6 C 1.50269 * 125.88767 * 155.22087 * 4 3 2 7 7 N 1.49671 * 104.76447 * 217.25513 * 6 4 3 8 8 C 1.46901 * 111.00001 * 245.91695 * 7 6 4 9 9 C 1.52996 * 109.46991 * 169.99866 * 8 7 6 10 10 C 1.53002 * 109.47015 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.47369 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.47117 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00091 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99586 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99828 * 179.97438 * 14 12 11 16 16 Si 1.86795 * 120.00449 * 359.97438 * 14 12 11 17 17 H 1.48508 * 109.47144 * 90.00017 * 16 14 12 18 18 H 1.48497 * 109.47623 * 209.99935 * 16 14 12 19 19 H 1.48501 * 109.47418 * 330.00509 * 16 14 12 20 20 C 1.50163 * 107.63796 * 7.57079 * 7 6 4 21 21 C 1.50825 * 102.12197 * 25.37178 * 20 7 6 22 22 H 1.08994 * 110.19555 * 69.23003 * 21 20 7 23 23 C 1.49896 * 110.99858 * 240.54510 * 2 1 3 24 24 H 1.08992 * 109.47459 * 179.45594 * 1 2 3 25 25 H 1.09004 * 109.47040 * 299.45745 * 1 2 3 26 26 H 1.09000 * 109.47033 * 59.45697 * 1 2 3 27 27 H 1.09000 * 110.95741 * 330.31970 * 3 2 1 28 28 H 1.09004 * 110.94950 * 94.03551 * 3 2 1 29 29 H 1.09001 * 110.37525 * 336.07245 * 6 4 3 30 30 H 1.08994 * 110.38528 * 98.43155 * 6 4 3 31 31 H 1.09008 * 109.46617 * 289.99590 * 8 7 6 32 32 H 1.08996 * 109.47131 * 49.99099 * 8 7 6 33 33 H 1.08998 * 109.47043 * 299.99478 * 9 8 7 34 34 H 1.08999 * 109.47406 * 59.99955 * 9 8 7 35 35 H 1.08997 * 109.47297 * 300.00473 * 10 9 8 36 36 H 1.09002 * 109.47093 * 60.00029 * 10 9 8 37 37 H 1.09008 * 109.47030 * 300.00044 * 11 10 9 38 38 H 1.08999 * 109.47400 * 59.99655 * 11 10 9 39 39 H 0.97002 * 120.00354 * 179.97438 * 15 14 12 40 40 H 1.08998 * 110.87412 * 267.21386 * 20 7 6 41 41 H 1.09002 * 110.87126 * 143.52635 * 20 7 6 42 42 H 1.09000 * 110.41896 * 232.98044 * 23 2 1 43 43 H 1.09001 * 110.42121 * 355.45066 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0076 1.4030 0.0000 4 6 3.2869 1.2444 -0.7872 5 1 4.0059 0.6501 -0.2233 6 6 3.9875 2.3282 -1.5572 7 7 4.5164 1.6463 -2.7801 8 6 5.9853 1.6323 -2.7812 9 6 6.4857 0.7203 -3.9031 10 6 8.0157 0.7062 -3.9047 11 6 8.5162 -0.2054 -5.0270 12 6 10.0232 -0.2197 -5.0281 13 1 10.5693 0.3634 -4.3014 14 6 10.7046 -0.9764 -5.9577 15 7 12.0197 -0.9885 -5.9590 16 14 9.7601 -1.9843 -7.2151 17 1 9.5189 -1.1624 -8.4282 18 1 10.5511 -3.1866 -7.5811 19 1 8.4591 -2.4053 -6.6358 20 6 3.9650 0.2496 -2.7967 21 6 2.6986 0.3995 -1.9914 22 1 1.9687 0.9906 -2.5445 23 6 2.0062 -0.6881 -1.2185 24 1 -0.3634 -1.0275 -0.0098 25 1 -0.3633 0.5054 0.8948 26 1 -0.3633 0.5222 -0.8851 27 1 1.3217 2.0839 -0.5040 28 1 2.2141 1.7412 1.0155 29 1 3.2832 3.1125 -1.8346 30 1 4.8065 2.7427 -0.9696 31 1 6.3581 2.6440 -2.9419 32 1 6.3459 1.2602 -1.8223 33 1 6.1130 -0.2913 -3.7425 34 1 6.1252 1.0924 -4.8620 35 1 8.3882 1.7178 -4.0654 36 1 8.3767 0.3342 -2.9458 37 1 8.1437 -1.2172 -4.8666 38 1 8.1553 0.1669 -5.9857 39 1 12.4992 -1.5211 -6.6127 40 1 4.6523 -0.4450 -2.3138 41 1 3.7422 -0.0678 -3.8154 42 1 2.7167 -1.4645 -0.9347 43 1 1.1918 -1.1127 -1.8056 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687776796.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:09 Heat of formation + Delta-G solvation = -2.301234 kcal Electronic energy + Delta-G solvation = -18694.699245 eV Core-core repulsion = 15966.985152 eV Total energy + Delta-G solvation = -2727.714093 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.65452 -38.22092 -36.33992 -34.54337 -32.72731 -31.45500 -30.27260 -27.68582 -27.44384 -25.47816 -23.44812 -22.05025 -21.68186 -21.28037 -20.99814 -18.86935 -17.50579 -16.67259 -16.54412 -16.31043 -15.92826 -15.59189 -15.00110 -14.94689 -14.70501 -14.65810 -13.91947 -13.75917 -13.65624 -13.31839 -12.98870 -12.97201 -12.81924 -12.56797 -12.34375 -12.28167 -12.04777 -11.88873 -11.80473 -11.76100 -11.39351 -11.31426 -11.18626 -11.07037 -10.76772 -9.48669 -9.28118 -8.30102 -6.34316 1.35603 1.37433 1.49966 2.36204 2.81415 2.87226 2.90104 3.05205 3.65085 3.97538 4.00768 4.11980 4.22741 4.28051 4.29579 4.32577 4.48014 4.50447 4.54569 4.58059 4.60686 4.71027 4.72991 4.78553 4.81252 4.86559 4.96043 4.98629 5.02172 5.10509 5.12893 5.22219 5.24162 5.29035 5.55741 5.63289 5.67340 5.73051 5.82507 5.99137 6.04650 6.28765 6.73962 7.30535 8.86962 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.041696 B = 0.003484 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.373472 B = 8034.098622 C = 8417.764088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.546 5.546 3 C 0.064 3.936 4 C -0.134 4.134 5 H 0.070 0.930 6 C 0.060 3.940 7 N -0.534 5.534 8 C 0.057 3.943 9 C -0.108 4.108 10 C -0.094 4.094 11 C -0.011 4.011 12 C -0.535 4.535 13 H 0.029 0.971 14 C 0.000 4.000 15 N -0.954 5.954 16 Si 0.954 3.046 17 H -0.266 1.266 18 H -0.283 1.283 19 H -0.246 1.246 20 C 0.059 3.941 21 C -0.133 4.133 22 H 0.081 0.919 23 C 0.059 3.941 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.030 0.970 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.032 0.968 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.045 0.955 37 H 0.018 0.982 38 H 0.017 0.983 39 H 0.266 0.734 40 H 0.049 0.951 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.434 3.754 10.773 28.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.270 5.270 3 C -0.064 4.064 4 C -0.154 4.154 5 H 0.088 0.912 6 C -0.068 4.068 7 N -0.258 5.258 8 C -0.071 4.071 9 C -0.146 4.146 10 C -0.133 4.133 11 C -0.049 4.049 12 C -0.573 4.573 13 H 0.048 0.952 14 C -0.196 4.196 15 N -0.594 5.594 16 Si 0.777 3.223 17 H -0.191 1.191 18 H -0.209 1.209 19 H -0.170 1.170 20 C -0.068 4.068 21 C -0.153 4.153 22 H 0.099 0.901 23 C -0.069 4.069 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.049 0.951 27 H 0.080 0.920 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -26.301 3.699 10.709 28.638 hybrid contribution 0.582 -0.436 -0.579 0.929 sum -25.719 3.263 10.131 27.834 Atomic orbital electron populations 1.22578 0.86714 1.02634 1.01239 1.65370 1.09333 1.14343 1.37982 1.22376 0.93849 0.89519 1.00608 1.22637 0.97591 0.98662 0.96544 0.91151 1.22095 0.99157 0.96157 0.89363 1.65328 1.07628 1.14950 1.37910 1.22242 0.87259 1.00394 0.97232 1.21589 0.94541 0.99445 0.99013 1.21290 0.94589 0.99163 0.98219 1.19532 0.93631 0.95984 0.95733 1.21569 0.92428 1.27650 1.15678 0.95215 1.26085 0.95717 0.97858 0.99929 1.70080 1.08594 1.42876 1.37888 0.85598 0.79484 0.78208 0.78999 1.19078 1.20880 1.16954 1.22276 0.94256 0.89867 1.00438 1.22591 0.97258 0.99022 0.96392 0.90110 1.22144 0.99189 0.95851 0.89719 0.90748 0.90520 0.95097 0.92030 0.89290 0.89404 0.91463 0.90487 0.94952 0.92004 0.91673 0.93328 0.93659 0.96371 0.96415 0.92490 0.93306 0.89895 0.90686 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.26 127.69 1.18 1.39 16 2 N -0.55 -8.96 5.59 -913.53 -5.11 -14.07 16 3 C 0.06 0.96 6.52 85.00 0.55 1.51 16 4 C -0.13 -2.37 2.96 -10.37 -0.03 -2.40 16 5 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 6 C 0.06 1.13 6.68 84.88 0.57 1.69 16 7 N -0.53 -12.46 5.44 -888.91 -4.83 -17.30 16 8 C 0.06 1.50 4.84 86.30 0.42 1.92 16 9 C -0.11 -3.36 4.92 30.59 0.15 -3.20 16 10 C -0.09 -3.73 5.15 30.59 0.16 -3.58 16 11 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16 12 C -0.54 -31.88 9.66 25.60 0.25 -31.63 16 13 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 14 C 0.00 0.03 5.47 84.65 0.46 0.49 16 15 N -0.95 -61.20 13.96 21.45 0.30 -60.90 16 16 Si 0.95 45.18 27.47 68.60 1.88 47.07 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 19 H -0.25 -10.80 6.54 99.48 0.65 -10.14 16 20 C 0.06 1.28 5.08 84.96 0.43 1.71 16 21 C -0.13 -2.37 2.92 -10.42 -0.03 -2.40 16 22 H 0.08 1.48 8.13 -2.39 -0.02 1.46 16 23 C 0.06 0.97 6.73 84.85 0.57 1.54 16 24 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.03 0.36 8.11 -2.39 -0.02 0.34 16 27 H 0.06 0.83 7.88 -2.39 -0.02 0.81 16 28 H 0.09 1.23 8.14 -2.38 -0.02 1.22 16 29 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.07 1.24 7.64 -2.39 -0.02 1.22 16 31 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.03 0.86 8.06 -2.39 -0.02 0.84 16 33 H 0.06 1.86 6.57 -2.39 -0.02 1.85 16 34 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.02 0.85 7.20 -2.38 -0.02 0.83 16 38 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 39 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 40 H 0.05 1.14 7.26 -2.39 -0.02 1.12 16 41 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.07 1.07 7.66 -2.39 -0.02 1.05 16 Total: -1.00 -66.46 329.38 -2.08 -68.54 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 0.88 Total: 10.05 kcal Atomic # 6 Polarization: -38.19 SS G_CDS: 4.80 Total: -33.39 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -9.64 Total: -92.27 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.88 Total: 47.07 kcal Total: -66.46 -2.08 -68.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776796.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.241 kcal (2) G-P(sol) polarization free energy of solvation -66.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds