Wall clock time and date at job start Mon Mar 30 2020 04:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.49622 * 111.17889 * 2 1 4 4 C 1.50825 * 102.37342 * 146.78616 * 3 2 1 5 5 H 1.08993 * 110.17147 * 69.61099 * 4 3 2 6 6 C 1.50330 * 126.10599 * 205.88487 * 4 3 2 7 7 N 1.49896 * 104.52625 * 144.05105 * 6 4 3 8 8 C 1.46905 * 110.99914 * 114.21453 * 7 6 4 9 9 C 1.52999 * 109.47026 * 170.00486 * 8 7 6 10 10 C 1.52992 * 109.47175 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.47355 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47589 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99318 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00399 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00209 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00058 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47191 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47245 * 120.00032 * 16 14 12 19 19 H 1.48508 * 109.46757 * 239.99842 * 16 14 12 20 20 C 1.50286 * 107.46987 * 352.66737 * 7 6 4 21 21 C 1.51055 * 101.85687 * 333.72561 * 20 7 6 22 22 H 1.08996 * 110.25616 * 291.98692 * 21 20 7 23 23 C 1.49669 * 110.99991 * 119.87621 * 2 1 3 24 24 H 1.09002 * 109.47192 * 300.12442 * 1 2 3 25 25 H 1.09000 * 109.46936 * 60.12136 * 1 2 3 26 26 H 1.08996 * 109.47329 * 180.12212 * 1 2 3 27 27 H 1.08992 * 110.46139 * 28.67187 * 3 2 1 28 28 H 1.09002 * 111.03750 * 265.15668 * 3 2 1 29 29 H 1.09003 * 110.42666 * 25.29435 * 6 4 3 30 30 H 1.08998 * 110.53217 * 262.86508 * 6 4 3 31 31 H 1.09002 * 109.46907 * 290.00367 * 8 7 6 32 32 H 1.08994 * 109.47002 * 50.00654 * 8 7 6 33 33 H 1.08997 * 109.47200 * 300.00187 * 9 8 7 34 34 H 1.09008 * 109.47362 * 59.99742 * 9 8 7 35 35 H 1.09003 * 109.47675 * 299.99719 * 10 9 8 36 36 H 1.09004 * 109.47520 * 59.99998 * 10 9 8 37 37 H 1.08997 * 109.47390 * 300.00353 * 11 10 9 38 38 H 1.09007 * 109.46942 * 60.00351 * 11 10 9 39 39 H 0.96997 * 120.00229 * 180.02562 * 15 14 12 40 40 H 1.09004 * 110.94814 * 91.86359 * 20 7 6 41 41 H 1.08993 * 110.95377 * 215.58394 * 20 7 6 42 42 H 1.08995 * 110.37929 * 127.09476 * 23 2 1 43 43 H 1.08999 * 110.38043 * 4.73883 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0096 1.3952 0.0000 4 6 3.2756 1.2512 0.8070 5 1 4.0147 0.6779 0.2476 6 6 3.9513 2.3376 1.5963 7 7 4.4952 1.6403 2.8066 8 6 5.9641 1.6603 2.8101 9 6 6.4776 1.1682 4.1647 10 6 8.0073 1.1896 4.1687 11 6 8.5209 0.6981 5.5235 12 6 10.0277 0.7186 5.5272 13 1 10.5653 1.0496 4.6509 14 6 10.7200 0.3150 6.6491 15 7 10.0653 -0.0885 7.7160 16 14 12.5878 0.3411 6.6538 17 1 13.0793 0.8321 5.3414 18 1 13.0675 1.2430 7.7315 19 1 13.1014 -1.0318 6.8921 20 6 3.9758 0.2301 2.7862 21 6 2.6962 0.3820 1.9981 22 1 1.9679 0.9586 2.5684 23 6 2.0054 -0.6960 1.2116 24 1 -0.3634 0.5158 0.8889 25 1 -0.3633 0.5119 -0.8911 26 1 -0.3634 -1.0276 0.0022 27 1 1.3118 2.0741 0.4899 28 1 2.2310 1.7290 -1.0137 29 1 3.2296 3.1003 1.8890 30 1 4.7609 2.7831 1.0182 31 1 6.3382 1.0081 2.0210 32 1 6.3139 2.6779 2.6368 33 1 6.1034 1.8204 4.9539 34 1 6.1276 0.1505 4.3381 35 1 8.3820 0.5377 3.3795 36 1 8.3570 2.2075 3.9955 37 1 8.1463 1.3503 6.3124 38 1 8.1714 -0.3197 5.6970 39 1 10.5523 -0.3722 8.5054 40 1 4.6722 -0.4343 2.2745 41 1 3.7717 -0.1247 3.7964 42 1 2.7167 -1.4692 0.9214 43 1 1.1908 -1.1275 1.7932 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687776797.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:12 Heat of formation + Delta-G solvation = 14.598988 kcal Electronic energy + Delta-G solvation = -18548.181917 eV Core-core repulsion = 15821.200673 eV Total energy + Delta-G solvation = -2726.981244 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.81667 -37.18287 -34.69821 -32.74195 -31.22274 -30.62282 -28.52981 -26.73773 -26.17475 -24.14593 -22.26338 -20.95196 -20.52985 -20.21503 -19.94904 -16.76917 -16.14430 -15.64784 -15.30724 -15.10736 -14.63072 -14.42418 -14.11577 -13.98632 -13.37820 -12.93955 -12.81649 -12.37727 -12.24962 -12.07059 -11.92643 -11.67776 -11.56574 -11.37422 -11.01739 -10.99871 -10.91727 -10.53017 -10.46600 -10.40407 -10.20357 -9.59191 -9.23014 -8.96581 -8.74611 -8.33575 -8.30490 -5.95787 -3.97853 3.33135 3.40345 3.44731 3.55087 3.66993 3.82676 4.43731 4.49381 4.78700 4.92570 4.98014 5.03566 5.12567 5.14900 5.22716 5.35747 5.38488 5.39969 5.42399 5.52269 5.52545 5.59373 5.62867 5.78208 5.83466 5.93306 5.95644 6.09409 6.17460 6.26524 6.42910 6.52905 6.66070 6.78848 6.90262 7.00179 7.07143 7.26132 7.73950 7.89930 8.05705 8.48596 9.09979 9.65968 11.15645 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.058709 B = 0.003046 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.814370 B = 9189.466169 C = 9368.986808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.533 5.533 3 C 0.062 3.938 4 C -0.142 4.142 5 H 0.083 0.917 6 C 0.058 3.942 7 N -0.524 5.524 8 C 0.049 3.951 9 C -0.111 4.111 10 C -0.109 4.109 11 C 0.021 3.979 12 C -0.519 4.519 13 H 0.054 0.946 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.061 3.939 21 C -0.139 4.139 22 H 0.082 0.918 23 C 0.058 3.942 24 H 0.027 0.973 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.051 0.949 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.032 0.968 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.044 0.956 36 H 0.046 0.954 37 H 0.015 0.985 38 H 0.014 0.986 39 H 0.259 0.741 40 H 0.054 0.946 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.917 1.887 -15.032 24.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.257 5.257 3 C -0.066 4.066 4 C -0.162 4.162 5 H 0.101 0.899 6 C -0.070 4.070 7 N -0.248 5.248 8 C -0.079 4.079 9 C -0.149 4.149 10 C -0.147 4.147 11 C -0.016 4.016 12 C -0.557 4.557 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.066 4.066 21 C -0.160 4.160 22 H 0.100 0.900 23 C -0.069 4.069 24 H 0.045 0.955 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.033 0.967 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.899 1.823 -14.856 24.108 hybrid contribution 1.040 -0.025 0.126 1.048 sum -17.859 1.798 -14.731 23.220 Atomic orbital electron populations 1.22528 0.87815 1.02070 1.00645 1.64984 1.08044 1.14173 1.38536 1.22190 0.94616 0.89554 1.00230 1.22701 0.97652 0.99265 0.96556 0.89890 1.22132 0.98881 0.95831 0.90139 1.65418 1.09390 1.12760 1.37186 1.22455 0.85927 1.00968 0.98536 1.21611 0.97236 1.00777 0.95289 1.21601 0.92065 1.00188 1.00887 1.19091 0.95403 0.96281 0.90824 1.21333 0.92068 1.43167 0.99134 0.92740 1.25036 0.98372 0.95482 0.95696 1.69979 1.35233 1.44713 1.03668 0.86559 0.86007 0.77605 0.77972 1.19777 1.21024 1.21048 1.22372 0.93720 0.90143 1.00389 1.22716 0.97961 0.98564 0.96716 0.89995 1.22093 0.99035 0.96186 0.89630 0.95456 0.91360 0.91258 0.93019 0.89886 0.90458 0.91800 0.94980 0.91004 0.91747 0.92693 0.93741 0.93506 0.96617 0.96747 0.93119 0.92720 0.89683 0.90011 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.24 60.06 0.55 0.69 16 2 N -0.53 -4.94 5.56 -241.10 -1.34 -6.28 16 3 C 0.06 0.54 6.55 -3.39 -0.02 0.52 16 4 C -0.14 -1.40 2.92 -90.04 -0.26 -1.66 16 5 H 0.08 0.91 8.13 -51.93 -0.42 0.49 16 6 C 0.06 0.62 6.71 -3.48 -0.02 0.60 16 7 N -0.52 -6.89 5.30 -231.81 -1.23 -8.11 16 8 C 0.05 0.72 4.69 -3.82 -0.02 0.70 16 9 C -0.11 -1.96 5.28 -26.74 -0.14 -2.10 16 10 C -0.11 -2.30 5.15 -26.74 -0.14 -2.44 16 11 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 12 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 13 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 14 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16 16 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 C 0.06 0.74 5.67 -2.90 -0.02 0.72 16 21 C -0.14 -1.41 2.96 -89.96 -0.27 -1.68 16 22 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 23 C 0.06 0.54 6.72 -3.64 -0.02 0.51 16 24 H 0.03 0.20 8.11 -51.93 -0.42 -0.23 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.43 7.84 -51.93 -0.41 0.02 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.66 7.58 -51.93 -0.39 0.27 16 31 H 0.03 0.46 7.86 -51.93 -0.41 0.05 16 32 H 0.07 1.02 7.98 -51.93 -0.41 0.61 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.05 0.97 7.54 -51.92 -0.39 0.58 16 35 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.01 0.40 8.14 -51.92 -0.42 -0.02 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.05 0.68 7.72 -51.93 -0.40 0.27 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.53 7.65 -51.93 -0.40 0.14 16 LS Contribution 334.58 15.07 5.04 5.04 Total: -1.00 -30.62 334.58 -10.99 -41.61 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -8.27 Total: -4.89 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -0.91 Total: -17.59 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: -1.83 Total: -41.17 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.62 -10.99 -41.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776797.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.206 kcal (2) G-P(sol) polarization free energy of solvation -30.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds