Wall clock time and date at job start Mon Mar 30 2020 04:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.49622 * 111.17889 * 2 1 4 4 C 1.50825 * 102.37342 * 146.78616 * 3 2 1 5 5 H 1.08993 * 110.17147 * 69.61099 * 4 3 2 6 6 C 1.50330 * 126.10599 * 205.88487 * 4 3 2 7 7 N 1.49896 * 104.52625 * 144.05105 * 6 4 3 8 8 C 1.46905 * 110.99914 * 114.21453 * 7 6 4 9 9 C 1.52999 * 109.47026 * 170.00486 * 8 7 6 10 10 C 1.52992 * 109.47175 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.47355 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47589 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99318 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00399 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00209 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00058 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47191 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47245 * 120.00032 * 16 14 12 19 19 H 1.48508 * 109.46757 * 239.99842 * 16 14 12 20 20 C 1.50286 * 107.46987 * 352.66737 * 7 6 4 21 21 C 1.51055 * 101.85687 * 333.72561 * 20 7 6 22 22 H 1.08996 * 110.25616 * 291.98692 * 21 20 7 23 23 C 1.49669 * 110.99991 * 119.87621 * 2 1 3 24 24 H 1.09002 * 109.47192 * 300.12442 * 1 2 3 25 25 H 1.09000 * 109.46936 * 60.12136 * 1 2 3 26 26 H 1.08996 * 109.47329 * 180.12212 * 1 2 3 27 27 H 1.08992 * 110.46139 * 28.67187 * 3 2 1 28 28 H 1.09002 * 111.03750 * 265.15668 * 3 2 1 29 29 H 1.09003 * 110.42666 * 25.29435 * 6 4 3 30 30 H 1.08998 * 110.53217 * 262.86508 * 6 4 3 31 31 H 1.09002 * 109.46907 * 290.00367 * 8 7 6 32 32 H 1.08994 * 109.47002 * 50.00654 * 8 7 6 33 33 H 1.08997 * 109.47200 * 300.00187 * 9 8 7 34 34 H 1.09008 * 109.47362 * 59.99742 * 9 8 7 35 35 H 1.09003 * 109.47675 * 299.99719 * 10 9 8 36 36 H 1.09004 * 109.47520 * 59.99998 * 10 9 8 37 37 H 1.08997 * 109.47390 * 300.00353 * 11 10 9 38 38 H 1.09007 * 109.46942 * 60.00351 * 11 10 9 39 39 H 0.96997 * 120.00229 * 180.02562 * 15 14 12 40 40 H 1.09004 * 110.94814 * 91.86359 * 20 7 6 41 41 H 1.08993 * 110.95377 * 215.58394 * 20 7 6 42 42 H 1.08995 * 110.37929 * 127.09476 * 23 2 1 43 43 H 1.08999 * 110.38043 * 4.73883 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0096 1.3952 0.0000 4 6 3.2756 1.2512 0.8070 5 1 4.0147 0.6779 0.2476 6 6 3.9513 2.3376 1.5963 7 7 4.4952 1.6403 2.8066 8 6 5.9641 1.6603 2.8101 9 6 6.4776 1.1682 4.1647 10 6 8.0073 1.1896 4.1687 11 6 8.5209 0.6981 5.5235 12 6 10.0277 0.7186 5.5272 13 1 10.5653 1.0496 4.6509 14 6 10.7200 0.3150 6.6491 15 7 10.0653 -0.0885 7.7160 16 14 12.5878 0.3411 6.6538 17 1 13.0793 0.8321 5.3414 18 1 13.0675 1.2430 7.7315 19 1 13.1014 -1.0318 6.8921 20 6 3.9758 0.2301 2.7862 21 6 2.6962 0.3820 1.9981 22 1 1.9679 0.9586 2.5684 23 6 2.0054 -0.6960 1.2116 24 1 -0.3634 0.5158 0.8889 25 1 -0.3633 0.5119 -0.8911 26 1 -0.3634 -1.0276 0.0022 27 1 1.3118 2.0741 0.4899 28 1 2.2310 1.7290 -1.0137 29 1 3.2296 3.1003 1.8890 30 1 4.7609 2.7831 1.0182 31 1 6.3382 1.0081 2.0210 32 1 6.3139 2.6779 2.6368 33 1 6.1034 1.8204 4.9539 34 1 6.1276 0.1505 4.3381 35 1 8.3820 0.5377 3.3795 36 1 8.3570 2.2075 3.9955 37 1 8.1463 1.3503 6.3124 38 1 8.1714 -0.3197 5.6970 39 1 10.5523 -0.3722 8.5054 40 1 4.6722 -0.4343 2.2745 41 1 3.7717 -0.1247 3.7964 42 1 2.7167 -1.4692 0.9214 43 1 1.1908 -1.1275 1.7932 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687776797.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:12 Heat of formation + Delta-G solvation = -5.632763 kcal Electronic energy + Delta-G solvation = -18549.059232 eV Core-core repulsion = 15821.200673 eV Total energy + Delta-G solvation = -2727.858559 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.64463 -38.16183 -36.34947 -34.54944 -32.55221 -31.43422 -30.00436 -27.59825 -27.41759 -25.63276 -23.53040 -22.11698 -21.67597 -21.33770 -21.06572 -18.45610 -17.52896 -16.61057 -16.52460 -16.38984 -15.94198 -15.63907 -15.04656 -14.83885 -14.61429 -14.41412 -13.88024 -13.67772 -13.56035 -13.35625 -12.95659 -12.91296 -12.80588 -12.56950 -12.39883 -12.22705 -12.17741 -12.04699 -11.86903 -11.77337 -11.39464 -11.29922 -11.08318 -10.96014 -10.56448 -9.48688 -9.28677 -8.20327 -6.31903 1.39295 1.39833 1.53410 2.40548 2.80784 2.86799 2.90363 3.12382 3.64482 3.98458 4.03167 4.15766 4.22954 4.29069 4.30948 4.32240 4.49872 4.55144 4.55262 4.58306 4.62999 4.71059 4.73456 4.80573 4.83787 4.89817 4.95856 4.99091 5.03358 5.12658 5.23700 5.27107 5.28710 5.35429 5.54843 5.75383 5.76060 5.82915 5.87113 6.00371 6.05731 6.25518 6.85888 7.37543 8.91897 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.058709 B = 0.003046 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.814370 B = 9189.466169 C = 9368.986808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.546 5.546 3 C 0.066 3.934 4 C -0.133 4.133 5 H 0.072 0.928 6 C 0.060 3.940 7 N -0.538 5.538 8 C 0.061 3.939 9 C -0.100 4.100 10 C -0.096 4.096 11 C 0.023 3.977 12 C -0.543 4.543 13 H 0.060 0.940 14 C -0.004 4.004 15 N -0.935 5.935 16 Si 0.967 3.033 17 H -0.261 1.261 18 H -0.277 1.277 19 H -0.277 1.277 20 C 0.060 3.940 21 C -0.132 4.132 22 H 0.079 0.921 23 C 0.060 3.940 24 H 0.029 0.971 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.036 0.964 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.052 0.948 37 H -0.011 1.011 38 H -0.012 1.012 39 H 0.264 0.736 40 H 0.050 0.950 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.993 2.422 -16.560 25.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.270 5.270 3 C -0.062 4.062 4 C -0.153 4.153 5 H 0.090 0.910 6 C -0.067 4.067 7 N -0.262 5.262 8 C -0.068 4.068 9 C -0.138 4.138 10 C -0.134 4.134 11 C -0.014 4.014 12 C -0.581 4.581 13 H 0.078 0.922 14 C -0.201 4.201 15 N -0.576 5.576 16 Si 0.791 3.209 17 H -0.185 1.185 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.068 4.068 21 C -0.152 4.152 22 H 0.097 0.903 23 C -0.067 4.067 24 H 0.048 0.952 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.109 0.891 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.007 0.993 38 H 0.007 0.993 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.992 2.365 -16.402 25.206 hybrid contribution 1.015 -0.206 0.631 1.213 sum -17.977 2.159 -15.771 24.012 Atomic orbital electron populations 1.22577 0.86621 1.02678 1.01189 1.64993 1.09273 1.14418 1.38333 1.22196 0.93927 0.89547 1.00509 1.22609 0.97841 0.98530 0.96321 0.90970 1.22149 0.99262 0.95951 0.89371 1.65351 1.08299 1.13560 1.38971 1.22231 0.87090 1.01193 0.96258 1.21427 0.94787 1.00460 0.97174 1.21402 0.94356 1.00140 0.97548 1.19016 0.94818 0.94353 0.93190 1.21771 0.93375 1.43400 0.99590 0.92174 1.26034 1.04136 0.94786 0.95163 1.70113 1.37597 1.45402 1.04450 0.85371 0.79029 0.77934 0.78543 1.18511 1.20271 1.20295 1.22344 0.94647 0.89562 1.00238 1.22599 0.97021 0.99081 0.96525 0.90292 1.22073 0.99175 0.95796 0.89682 0.95243 0.90443 0.90690 0.92306 0.89088 0.89618 0.91134 0.94618 0.90268 0.92796 0.93263 0.93228 0.92936 0.99282 0.99342 0.92764 0.93216 0.90532 0.90554 0.90809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.24 127.69 1.18 1.40 16 2 N -0.55 -9.09 5.56 -916.69 -5.09 -14.19 16 3 C 0.07 1.01 6.55 85.07 0.56 1.56 16 4 C -0.13 -2.41 2.92 -10.42 -0.03 -2.44 16 5 H 0.07 1.49 8.13 -2.39 -0.02 1.47 16 6 C 0.06 1.19 6.71 84.85 0.57 1.75 16 7 N -0.54 -13.62 5.30 -887.33 -4.70 -18.32 16 8 C 0.06 1.70 4.69 86.30 0.40 2.11 16 9 C -0.10 -3.56 5.28 30.59 0.16 -3.39 16 10 C -0.10 -4.07 5.15 30.59 0.16 -3.91 16 11 C 0.02 1.28 4.97 29.85 0.15 1.43 16 12 C -0.54 -31.89 9.11 25.60 0.23 -31.65 16 13 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 14 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 15 N -0.94 -58.38 13.29 21.44 0.28 -58.10 16 16 Si 0.97 45.09 29.54 68.60 2.03 47.11 16 17 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 C 0.06 1.41 5.67 85.00 0.48 1.89 16 21 C -0.13 -2.53 2.96 -10.37 -0.03 -2.56 16 22 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 23 C 0.06 1.03 6.72 84.88 0.57 1.60 16 24 H 0.03 0.36 8.11 -2.39 -0.02 0.34 16 25 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.06 0.83 7.84 -2.39 -0.02 0.81 16 28 H 0.09 1.26 8.14 -2.39 -0.02 1.25 16 29 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 1.31 7.58 -2.39 -0.02 1.30 16 31 H 0.04 0.98 7.86 -2.39 -0.02 0.96 16 32 H 0.08 2.12 7.98 -2.39 -0.02 2.10 16 33 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.05 1.78 7.54 -2.38 -0.02 1.76 16 35 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.05 2.14 8.14 -2.39 -0.02 2.13 16 37 H -0.01 -0.67 8.14 -2.39 -0.02 -0.68 16 38 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 39 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 40 H 0.05 1.22 7.72 -2.39 -0.02 1.20 16 41 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.07 1.11 7.65 -2.39 -0.02 1.10 16 Total: -1.00 -65.37 334.58 -1.69 -67.06 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 0.93 Total: 8.40 kcal Atomic # 6 Polarization: -36.83 SS G_CDS: 4.86 Total: -31.97 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -9.51 Total: -90.60 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -65.37 -1.69 -67.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776797.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.427 kcal (2) G-P(sol) polarization free energy of solvation -65.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds